These files contain the current CTD data release: September 2024.
For customized data sets, use our Batch Query.
CTD data is provided without warranty, and its use is subject to certain terms. Commercial users should direct licensing-related questions here.
CTD_chem_gene_ixns.csv.gz | Sep 27 2024 11:17 EDT | 36 MB |
CTD_chem_gene_ixns.tsv.gz | Sep 27 2024 11:17 EDT | 36 MB |
CTD_chem_gene_ixns.xml.gz | Sep 27 2024 11:17 EDT | 43 MB |
Fields:
CTD_chem_gene_ixns_structured.xml.gz | Sep 27 2024 11:18 EDT | 121 MB |
CTD_chem_gene_ixns_structured.xsd | May 24 2023 10:24 EDT | 9 KB |
CTD_chem_gene_ixn_types.csv | Feb 12 2024 14:47 EST | 4 KB |
CTD_chem_gene_ixn_types.obo | Feb 12 2024 15:28 EST | 20 KB |
CTD_chem_gene_ixn_types.tsv | Feb 12 2024 14:47 EST | 4 KB |
CTD_chem_gene_ixn_types.xml | Feb 12 2024 14:47 EST | 9 KB |
Fields (non-OBO):
CTD curates chemical–gene and –protein interactions in vertebrates and invertebrates using this hierarchical vocabulary of interaction types. More…
CTD_chemicals_diseases.csv.gz | Sep 27 2024 11:15 EDT | 144 MB |
CTD_chemicals_diseases.tsv.gz | Sep 27 2024 11:15 EDT | 143 MB |
CTD_chemicals_diseases.xml.gz | Sep 27 2024 11:14 EDT | 168 MB |
Fields:
CTD_chem_go_enriched.csv.gz | Sep 27 2024 11:09 EDT | 142 MB |
CTD_chem_go_enriched.tsv.gz | Sep 27 2024 11:08 EDT | 142 MB |
CTD_chem_go_enriched.xml.gz | Sep 27 2024 11:07 EDT | 188 MB |
Fields:
To provide insight into the biological properties that may be affected by chemicals, CTD calculates which GO terms are statistically enriched among the genes/proteins that interact with each chemical or its descendants. More…
CTD_chem_pathways_enriched.csv.gz | Sep 27 2024 11:10 EDT | 36 MB |
CTD_chem_pathways_enriched.tsv.gz | Sep 27 2024 11:10 EDT | 36 MB |
CTD_chem_pathways_enriched.xml.gz | Sep 27 2024 11:09 EDT | 50 MB |
Fields:
CTD_curated_genes_diseases.csv.gz | Sep 27 2024 15:37 EDT | 552 KB |
CTD_curated_genes_diseases.tsv.gz | Sep 27 2024 15:38 EDT | 547 KB |
CTD_curated_genes_diseases.xml.gz | Sep 27 2024 15:38 EDT | 711 KB |
Fields:
CTD_genes_diseases.csv.gz | Sep 27 2024 12:53 EDT | 2 GB |
CTD_genes_diseases.tsv.gz | Sep 27 2024 12:45 EDT | 2 GB |
CTD_genes_diseases.xml.gz | Sep 27 2024 12:37 EDT | 2 GB |
Fields:
CTD_genes_pathways.csv.gz | Sep 27 2024 11:10 EDT | 1 MB |
CTD_genes_pathways.tsv.gz | Sep 27 2024 11:10 EDT | 1 MB |
CTD_genes_pathways.xml.gz | Sep 27 2024 11:10 EDT | 1 MB |
Fields:
CTD_diseases_pathways.csv.gz | Sep 27 2024 11:10 EDT | 6 MB |
CTD_diseases_pathways.tsv.gz | Sep 27 2024 11:10 EDT | 6 MB |
CTD_diseases_pathways.xml.gz | Sep 27 2024 11:10 EDT | 7 MB |
Fields:
CTD_pheno_term_ixns.csv.gz | Sep 27 2024 12:56 EDT | 19 MB |
CTD_pheno_term_ixns.tsv.gz | Sep 27 2024 12:56 EDT | 19 MB |
CTD_pheno_term_ixns.xml.gz | Sep 27 2024 12:56 EDT | 22 MB |
Fields:
CTD_exposure_studies.csv.gz | Sep 27 2024 12:53 EDT | 518 KB |
CTD_exposure_studies.tsv.gz | Sep 27 2024 12:53 EDT | 514 KB |
CTD_exposure_studies.xml.gz | Sep 27 2024 12:53 EDT | 569 KB |
Fields:
CTD_exposure_events.csv.gz | Sep 27 2024 12:53 EDT | 3 MB |
CTD_exposure_events.tsv.gz | Sep 27 2024 12:53 EDT | 3 MB |
CTD_exposure_events.xml.gz | Sep 27 2024 12:53 EDT | 6 MB |
Fields:
CTD_Phenotype-Disease_biological_process_associations.csv.gz | Sep 27 2024 12:59 EDT | 44 MB |
CTD_Phenotype-Disease_biological_process_associations.tsv.gz | Sep 27 2024 12:59 EDT | 43 MB |
CTD_Phenotype-Disease_biological_process_associations.xml.gz | Sep 27 2024 12:59 EDT | 54 MB |
CTD_Phenotype-Disease_cellular_component_associations.csv.gz | Sep 27 2024 13:00 EDT | 2 MB |
CTD_Phenotype-Disease_cellular_component_associations.tsv.gz | Sep 27 2024 13:00 EDT | 2 MB |
CTD_Phenotype-Disease_cellular_component_associations.xml.gz | Sep 27 2024 13:00 EDT | 3 MB |
CTD_Phenotype-Disease_molecular_function_associations.csv.gz | Sep 27 2024 13:00 EDT | 4 MB |
CTD_Phenotype-Disease_molecular_function_associations.tsv.gz | Sep 27 2024 13:00 EDT | 4 MB |
CTD_Phenotype-Disease_molecular_function_associations.xml.gz | Sep 27 2024 13:00 EDT | 6 MB |
Fields:
CTD_chemicals.csv.gz | Sep 27 2024 11:01 EDT | 9 MB |
CTD_chemicals.tsv.gz | Sep 27 2024 11:01 EDT | 9 MB |
CTD_chemicals.xml.gz | Sep 27 2024 11:01 EDT | 10 MB |
Fields:
Each chemical occurs in one or more nodes of this hierarchical vocabulary. More…
See also: Linking to CTD chemicals.
CTD_diseases.csv.gz | Sep 27 2024 11:02 EDT | 1 MB |
CTD_diseases.obo.gz | Sep 27 2024 11:02 EDT | 1 MB |
CTD_diseases.tsv.gz | Sep 27 2024 11:02 EDT | 1 MB |
CTD_diseases.xml.gz | Sep 27 2024 11:02 EDT | 1 MB |
Fields (non-OBO):
CTD's MEDIC disease vocabulary is a modified subset of descriptors from the “Diseases” [C] branch of the U.S. National Library of Medicine's Medical Subject Headings (MeSH®), combined with genetic disorders from the Online Mendelian Inheritance in Man® (OMIM®) database. Each disease occurs in one or more nodes of this hierarchical vocabulary. More…
MEDIC-Slim classifies MEDIC diseases into high-level categories.
See also: Linking to CTD diseases.
CTD_anatomy.csv.gz | Sep 27 2024 13:00 EDT | 319 KB |
CTD_anatomy.tsv.gz | Sep 27 2024 13:00 EDT | 316 KB |
CTD_anatomy.xml.gz | Sep 27 2024 13:00 EDT | 343 KB |
Fields:
CTD's anatomy vocabulary is a modified subset of descriptors from the “Anatomy” [A] branch of the U.S. National Library of Medicine's Medical Subject Headings (MeSH®), manually integrated by CTD curators with the Uberon Multi-Species Anatomy Ontology (UBERON®), and the Cell Ontology (CL®). UBERON and CL terms are cross-referenced to the MeSH terms as synonyms to the terms, and via direct, accession-based cross-reference hyperlinks. Each anatomical term occurs in one or more nodes of this hierarchical vocabulary.
See also: Linking to CTD anatomical terms.
CTD_genes.csv.gz | Sep 27 2024 11:04 EDT | 75 MB |
CTD_genes.tsv.gz | Sep 27 2024 11:03 EDT | 75 MB |
CTD_genes.xml.gz | Sep 27 2024 11:03 EDT | 77 MB |
Fields:
See also: Linking to CTD genes.
CTD_pathways.csv.gz | Sep 27 2024 11:01 EDT | 41 KB |
CTD_pathways.tsv.gz | Sep 27 2024 11:01 EDT | 41 KB |
CTD_pathways.xml.gz | Sep 27 2024 11:01 EDT | 46 KB |
Fields:
See also: Linking to CTD pathways.
CTD_exposure_ontology.obo | May 24 2023 10:24 EDT | 59 KB |
The draft Exposure Ontology (ExO) will provide exposure context for CTD data. More…