CDS a owl:Class extends TranscriptFeature

Subclasses


skos:definition	Coding sequence; sequence of nucleotides that corresponds with the sequence of amino acids in a protein (location includes stop codon); feature includes amino acid conceptual translation.
ddbjLabel	CDS
subDomain	SequenceFeatureCore
skos:editorialNote	TransLExcept class added to ontology, only CDS has this property /codon_start has valid value of 1 or 2 or 3, indicating the offset at which the first complete codon of a coding feature can be found, relative to the first base of that feature; /transl_table defines the genetic code table used if other than the universal genetic code table; genetic code exceptions outside the range of the specified tables is reported in /transl_except qualifier; /protein_id consists of a stable ID portion (3+5 format with 3 position letters and 5 numbers) plus a version number after the decimal point; when the protein sequence encoded by the CDS changes, only the version number of the /protein_id value is incremented; the stable part of the /protein_id remains unchanged and as a result will permanently be associated with a given protein;
skos:exactMatch	http://purl.obolibrary.org/obo/SO_0000316
skos:exactMatch	http://www.wikidata.org/entity/Q3780824

property	description	cardinality	type
proteinId	The ID of the protein if translated from this CDS (format ^\s([A-Z]{3}\d{5})(\.)(\d+)\s$)	0:1	xsd:string
ribosomalSlippage	Indicate the presence of ribosomal slippage, the slippage region are excluded from the CDS using a CollectionOfRegions location for the CDS on the transcript.	0:1	xsd:Boolean
exception	Deprecated feature, which is imported from GenBank, mark a unconventional translation of the transcript	0:1	xsd:string
product	Short description of the product resulting from the feature	0:1	xsd:string
codonStart	If the start position is unknown, indicate with this property, where the first complete codon can be found	0:1	xsd:Integer
protein	The resulting product protein when translating this CDS, each protein should have an IRI equal to http://gbol.life/0.1/protein/.	1:1	Protein
translExcept	Indicate all codons, which have translation other then the default translation of the translation table	0:N	TranslExcept