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PQ

PQ is a program for phylogeny reconstruction.

Paste a multiple sequence alignment (max. 100 sequences) in fasta format (example).

Growing Single, input order Single, shuffled order 5 times shuffled 10 times shuffled 20 times shuffled 50 times shuffled	Optimization None NNI hill climbing NNI Monte-Carlo	Matrix DNA/RNA Diagonal BLOSUM62 Special

Brief description of the algorithm

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Algorithm: Sergey Spirin, Mikhail Krivozubov, Dmitry Penzar
Programming: Dmitry Penzar
Funding:

• Russian Foundation for Basic Research, grant no. 13-07-00969 (2013–2015)
• Russian Science Foundation, grant no. 16-14-10319 (2016–2018)

Download the command-line version of PQ

Send your questions to Sergey Spirin.

Reference: Dmitry Penzar, Mikhail Krivozubov and Sergey Spirin. PQ, a new program for phylogeny reconstruction. BMC Bioinformatics, 2018, 19:374.

Moscow State University, 2015–2018