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UniProt RDF schema ontology

Imported Ontologies:
faldo
22-rdf-syntax-ns#
rdf-schema#
core
<http://xmlns.com/foaf/0.1/>
See also:
http://www.github.com/sib-swiss/sparql-training/tree/master/uniprot
https://sparql.uniprot.org/sparql
https://sparql.uniprot.org/.well-known/sparql-examples/
License:
http://creativecommons.org/licenses/by/4.0/
Visualization:
Visualize with WebVowl
Cite as:
UniProt RDF schema ontology.
Provenance of this page
published

Abstract

The UniProt RDF schema ontology is used to describe concepts that are central to the UniProt datasets. Especially those for which there is on consensus concept available in the wider Bioinformatics community.

Introduction back to ToC

UniProt as a large knowledge graph has a need to introduce the concepts it uses in it's RDF depiction. The UniProt consortium tries to reuse as much as possible existing ontologies and concepts widely used by authorative resources. When this is not possible UniProt has introduced it's own concepts described in this ontology file.

UniProt RDF schema ontology: Overview back to ToC

This ontology has the following classes and properties.

Classes

Object Properties

Data Properties

UniProt RDF schema ontology: Description back to ToC

The UniProt RDF schema ontology contains predicates used to describe UniProt entries and associated data.

Cross-reference for UniProt RDF schema ontology classes, object properties and data properties back to ToC

This section provides details for each class and property defined by UniProt RDF schema ontology.

Classes

Absorptionc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Absorption_Annotation

Indicates the wavelength in nm at which photoreactive proteins such as opsins and DNA photolyases show maximal absorption.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Biophysicochemical Property c
is in domain of
certain dp, maximum dp

Active Sitec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Active_Site_Annotation

Amino acid(s) involved in the activity of an enzyme.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Site c

Activity Regulationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Activity_Regulation_Annotation

Description of an enzyme, transporter and microbial transcription regulation mechanism.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c

Allergenc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Allergen_Annotation

Information relevant to allergenic proteins.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c

Alternative Initiationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Alternative_Initiation_Annotation

Is defined by
http://purl.uniprot.org/core/
has super-classes
Alternative Products c

Alternative Productsc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Alternative_Products_Annotation

Description of the existence of related protein sequences produced by alternative splicing of the same gene or by the use of alternative initiation codons.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c
has sub-classes
Alternative Initiation c, Alternative Promoter Usage c, Alternative Splicing c, Ribosomal Frameshifting c

Alternative Promoter Usagec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Alternative_Promoter_Usage_Annotation

Is defined by
http://purl.uniprot.org/core/
has super-classes
Alternative Products c

Alternative Splicingc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Alternative_Splicing_Annotation

Is defined by
http://purl.uniprot.org/core/
has super-classes
Alternative Products c

Attributionc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Attribution

Entity used to attach evidence or provenance to a rdf statement via reification.
Is defined by
http://purl.uniprot.org/core/
is in domain of
manual dp, source op
is in range of
attribution op

Binding Sitec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Binding_Site_Annotation

Binding site for any chemical group (co-enzyme, prosthetic group, etc.).
Is defined by
http://purl.uniprot.org/core/
has super-classes
Site c
is in domain of
ligand op, ligand part op

Biophysicochemical Propertyc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Biophysicochemical_Annotation

Biophysical and physicochemical data such as pH dependence, temperature dependence, kinetic parameters, redox potentials, and maximal absorption.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c
has sub-classes
Absorption c, Kinetics c, Redox Potential c, Temperature Dependence c, pH Dependence c

Biotechnologyc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Biotechnology_Annotation

Description of the use of a specific protein in a biotechnological process.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c

Book Citationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Book_Citation

A chapter from a book.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Published Citation c
is in domain of
editor dp, publisher dp

Catalytic Activityc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Catalytic_Activity

The catalytic activity of an enzyme.
Is defined by
http://purl.uniprot.org/core/
is in domain of
catalyzed reaction op, enzyme class op
is in range of
catalytic activity op, catalytic activity op

Catalytic Activity Annotationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Catalytic_Activity_Annotation

Description of the reactions catalyzed by an enzyme.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c
is in domain of
catalytic activity op, catalyzed physiological reaction op

Cautionc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Caution_Annotation

Warning about possible errors and/or grounds for confusion.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c

Cellular Componentc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Cellular_Component

Is defined by
http://purl.uniprot.org/core/
has super-classes
Subcellular Location c
is in range of
cellular component op

Chainc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Chain_Annotation

Extent of a polypeptide chain in the mature protein.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Molecule Processing c

Citationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Citation

Description of a publication from which data was obtained.
Is defined by
http://purl.uniprot.org/core/
has super-classes
has sub-classes
Published Citation c, Unpublished Citation c
is in domain of
author dp, authorsIncomplete dp, group dp, locator dp, published in op, title dp
is in range of
citation op, mapped citation op
is disjoint with
Protein c, Sequence c

Citation Statementc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Citation_Statement

The relationship between a resource and a citation.
Is defined by
http://purl.uniprot.org/core/
has super-classes
statement c
is in domain of
context op, scope dp

Cluster (UniRef)c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Cluster

Cluster of proteins with similar sequences.
Is defined by
http://purl.uniprot.org/core/
has super-classes
thing c
is in domain of
common taxon op, identity dp, member op, some members classified with op
is in range of
member of op, representative for op, seed for op
is disjoint with
Protein c, Sequence c

Cofactorc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Cofactor_Annotation

Description of an enzyme cofactor.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c
is in domain of
cofactor op

Coiled-Coilc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Coiled_Coil_Annotation

Extent of a coiled-coil region.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Region c

Compositionally Biased Regionc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Compositional_Bias_Annotation

Extent of a compositionally biased region.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Region c

Conceptc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Concept

A concept used to classify resources.
Is defined by
http://purl.uniprot.org/core/
has super-classes
class c
is in range of
classified with op

Database (description of)c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Database

Metadata for a life science database.
Is defined by
http://purl.uniprot.org/core/
has super-classes
class c
is in domain of
URI template dp, URL pattern dp, URL template dp, abstract dp, category op, curated dp, implicit dp, link is explicit dp
is in range of
database op

Developmental Stagec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Developmental_Stage_Annotation

Description of the developmentally-specific expression of a protein.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c

Diseasec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Disease

Is defined by
http://purl.uniprot.org/core/
is in range of
disease op

Disease Annotationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Disease_Annotation

Description of the diseases associated with a deficiency of a protein.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c
is in domain of
disease op

Disruption Phenotypec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Disruption_Phenotype_Annotation

Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c

Disulfide Bondc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Disulfide_Bond_Annotation

Describes residues which are linked by an intra-chain disulfide bond. If the endpoints are identical, the disulfide bond is an interchain one.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Modification c

DNAc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/DNA

Is defined by
http://purl.uniprot.org/core/
has super-classes
Molecule c
has sub-classes
Genomic DNA c, Other DNA c, Unassigned DNA c

DNA Bindingc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Nucleotide_Binding_Annotation

Extent of a DNA-binding region.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Region c

Domainc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Domain_Annotation

Description of the domain structure of a protein.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c

Domain Assignment Statementc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Domain_Assignment_Statement

The relationship between a protein and a protein domain.
Is defined by
http://purl.uniprot.org/core/
has super-classes
statement c

Domain Extentc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Domain_Extent_Annotation

Extent of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Region c

Electronic Citationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Electronic_Citation

An electronic publication.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Published Citation c

Endpoint Statementc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Endpoint_Statement

Metadata for an endpoint of a range on a sequence.
Is defined by
http://purl.uniprot.org/core/
has super-classes
statement c

Enzymec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Enzyme

A specific catalytic activity, defined by the Enzyme Commission of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB).
Is defined by
http://purl.uniprot.org/core/
has super-classes
is in domain of
catalytic activity op, cofactorLabel dp
is in range of
enzyme op, enzyme class op

Enzyme Regulationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Enzyme_Regulation_Annotation

The use of this class has been replaced by Activity_Regulation_Annotation
Is defined by
http://purl.uniprot.org/core/
Is deprecated
true

Erroneous Gene Model Predictionc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Erroneous_Gene_Model_Prediction_Annotation

Is defined by
http://purl.uniprot.org/core/
has super-classes
Sequence Caution c

Erroneous Initiationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Erroneous_Initiation_Annotation

Is defined by
http://purl.uniprot.org/core/
has super-classes
Sequence Caution c

Erroneous Terminationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Erroneous_Termination_Annotation

Is defined by
http://purl.uniprot.org/core/
has super-classes
Sequence Caution c

Erroneous Translationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Erroneous_Translation_Annotation

Is defined by
http://purl.uniprot.org/core/
has super-classes
Sequence Caution c

Excluded proteomec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Excluded_Proteome

A Proteome that has been excluded from UniProtKB for some reason, normally described by statements with the predicate up:exclusionReason
Is defined by
http://purl.uniprot.org/core/

Experimental Informationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Experimental_Information_Annotation

Is defined by
http://purl.uniprot.org/core/
has super-classes
Sequence Annotation c
has sub-classes
Mass c, Mutagenesis Site c, Non-consecutive Residues c, Non-terminal Residue c, Sequence Conflict c, Unsure Residue c

External Sequencec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/External_Sequence

The protein described in the linked record is an alternative splice form of the same gene product as described in this record. The function between the two isoforms is highly divergent.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Known Sequence c
is in domain of
translated from op
is in range of
conflicting sequence op

Family Membership Statementc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Family_Membership_Statement

Is deprecated
true

Frameshiftc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Frameshift_Annotation

Is defined by
http://purl.uniprot.org/core/
has super-classes
Sequence Caution c

Functionc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Function_Annotation

General description of the functions of a protein.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c

Genec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Gene

Is defined by
http://purl.uniprot.org/core/
has super-classes
concept c, thing c
is in domain of
ORF name dp, locus name op
is in range of
encoded by op

Genomic DNAc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Genomic_DNA

Is defined by
http://purl.uniprot.org/core/
has super-classes
DNA c

Genomic RNAc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Genomic_RNA

Is defined by
http://purl.uniprot.org/core/
has super-classes
RNA c

Glycosylation Sitec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Glycosylation_Annotation

Describes the occurrence of the attachment of a glycan (mono- or polysaccharide) to a residue of a protein.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Modification c

Helixc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Helix_Annotation

Helical regions within the experimentally determined protein structure
Is defined by
http://purl.uniprot.org/core/
has super-classes
Secondary Structure c

Inductionc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Induction_Annotation

Description of the compounds or conditions that stimulate the synthesis of a protein.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c

Initiator Methioninec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Initiator_Methionine_Annotation

Indicates that the initiator methionine has been cleaved off and is not shown in the sequence.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Molecule Processing c

Interactionc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Interaction

Description of a protein-protein interaction.
Is defined by
http://purl.uniprot.org/core/
has sub-classes
Non self interaction c, Self protein interaction c
is in domain of
experiments dp, negative dp, participant op, xeno dp
is in range of
interaction op

Interaction participantc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Participant

A participant in a protein-protein interaction.
Is defined by
http://purl.uniprot.org/core/
is in range of
participant op

INTRAMEMc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Intramembrane_Annotation

Extent of a region located in a membrane without crossing it
Is defined by
http://purl.uniprot.org/core/
has super-classes
Region c

Journalc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Journal

Is defined by
http://purl.uniprot.org/core/
has super-classes
thing c
is in domain of
shortCoden dp
is in range of
published in op

Journal Citationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Journal_Citation

An article published in a journal.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Published Citation c

Kineticsc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Kinetics_Annotation

Mentions the Michaelis-Menten constant (KM) and maximal velocity (Vmax) of enzymes.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Biophysicochemical Property c
is in domain of
measured activity dp, measured affinity dp

Known Sequencec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Known_Sequence

Is defined by
http://purl.uniprot.org/core/
has super-classes
Sequence c
has sub-classes
External Sequence c, Modified Sequence c, Simple Sequence c

Lipid Bindingc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Lipidation_Annotation

Covalent binding of a lipid moiety.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Modification c

Massc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Mass_Spectrometry_Annotation

Indicates the mass of a sequence determined by mass spectrometry.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Experimental Information c
is in domain of
measured error dp, measured value dp

Mass Measurementc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Mass_Measurement_Method

An experimental method for measuring the mass of a molecule.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Method c

Member Of Redudant Proteomec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Member_Of_Redudant_Proteome

This entry was obsoleted because its sequence belongs to a redundant protoeome
Is defined by
http://purl.uniprot.org/core/
has super-classes
Obsolete Protein c

Methodc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Method

An experimental method.
Is defined by
http://purl.uniprot.org/core/
has sub-classes
Mass Measurement c, Structure Determination c
is in range of
method op

Modificationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Modification_Annotation

Describes amino acid modifications, post pre- and post-translational.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Sequence Annotation c
has sub-classes
Crosslink c, Disulfide Bond c, Glycosylation Site c, Lipid Binding c, Modified Residue c, Non standard residue c

Modified Residuec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Modified_Residue_Annotation

Posttranslational modification of a residue.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Modification c

Modified Sequencec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Modified_Sequence

Is defined by
http://purl.uniprot.org/core/
has super-classes
Known Sequence c
is in domain of
based on op, modification op

Moleculec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Molecule

A biological molecule.
Is defined by
http://purl.uniprot.org/core/
has sub-classes
DNA c, RNA c
is in range of
located on op

Molecule Processingc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Molecule_Processing_Annotation

Is defined by
http://purl.uniprot.org/core/
has super-classes
Sequence Annotation c
has sub-classes
Chain c, Initiator Methionine c, Peptide c, Propeptide c, Signal Peptide c, Transit Peptide c

Motifc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Motif_Annotation

Short (<=20 amino acids) sequence motif of biological interest.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Region c

mRNAc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/MRNA

Is defined by
http://purl.uniprot.org/core/
has super-classes
RNA c

Mutagenesis Sitec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Mutagenesis_Annotation

Site which has been experimentally altered.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Experimental Information c

Natural Variationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Natural_Variation_Annotation

Is defined by
http://purl.uniprot.org/core/
has super-classes
Sequence Annotation c
has sub-classes
Sequence Variant c, Splice Variant c

Non self interactionc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Non_Self_Interaction

Description of a non self protein-protein interaction.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Interaction c

Non standard residuec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Non-standard_Residue_Annotation

Describes the occurrence of a non standard residue in the sequence record.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Modification c

Non-consecutive Residuesc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Non-adjacent_Residues_Annotation

Indicates that two residues in a sequence are not consecutive and that there are a number of unsequenced residues between them.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Experimental Information c

Non-terminal Residuec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Non-terminal_Residue_Annotation

The residue at an extremity of the sequence is not the terminal residue.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Experimental Information c

Not Obsoletec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Not_Obsolete

A class introduced to group all records that are currently in the database.
Is defined by
http://purl.uniprot.org/core/
is equivalent to
obsolete dp value false
has sub-classes
Not obsolete protein (record) c, Not obsolete taxon (record) c
is disjoint with
Obsolete c

Not obsolete protein (record)c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Not_Obsolete_Protein

Is defined by
http://purl.uniprot.org/core/
has super-classes
Not Obsolete c, Protein c

Not obsolete taxon (record)c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Not_Obsolete_Taxon

Is defined by
http://purl.uniprot.org/core/
has super-classes
Not Obsolete c, Taxon c

Nucleotide Mapping Statementc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Nucleotide_Mapping_Statement

The relationship between a protein and a nucleotide sequence.
Is defined by
http://purl.uniprot.org/core/
has super-classes
statement c

Nucleotide Resourcec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Nucleotide_Resource

A resource that descripes a nucleotide sequence.
Is defined by
http://purl.uniprot.org/core/
is equivalent to
located on op min 1
has super-classes
Resource c
is in domain of
located on op, sequence discrepancy op
is in range of
nucleotideSequenceMappingIssue op, translated from op

Observation Citationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Observation_Citation

Citation of an unpublished result.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Unpublished Citation c

Obsoletec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Obsolete

The class of all obsolete records in the database (i.e. records that where once published but are now removed).
Is defined by
http://purl.uniprot.org/core/
is equivalent to
obsolete dp value true
has sub-classes
Obsolete Protein c, Obsolete Taxon c
is disjoint with
Not Obsolete c

Obsolete Proteinc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Obsolete_Protein

Is defined by
http://purl.uniprot.org/core/
has super-classes
Obsolete c, Protein c
has sub-classes
Member Of Redudant Proteome c

Obsolete Taxonc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Obsolete_Taxon

Taxa are occasionally removed from the taxonomy database (particularly internal nodes, during a taxonomic revision) – these taxids are deleted, and are not reused.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Obsolete c, Taxon c

Organellec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Organelle

Is defined by
http://purl.uniprot.org/core/

Orientationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Orientation

Is defined by
http://purl.uniprot.org/core/
has super-classes
Subcellular Location c
is in range of
orientation op

Other DNAc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Other_DNA

Is defined by
http://purl.uniprot.org/core/
has super-classes
DNA c

Other RNAc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Other_RNA

Is defined by
http://purl.uniprot.org/core/
has super-classes
RNA c

Patent Citationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Patent_Citation

A patent application.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Published Citation c

Pathwayc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Pathway

A hierarchical discription of a metabolic pathway.
Is defined by
http://purl.uniprot.org/core/

Pathway annotationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Pathway_Annotation

Description of the metabolic pathways with which a protein is associated.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c

Peptidec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Peptide_Annotation

Extent of a released active peptide.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Molecule Processing c

pH Dependencec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/PH_Dependence_Annotation

Describes the optimum pH for enzyme activity and/or the variation of enzyme activity with pH variation.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Biophysicochemical Property c

Pharmaceuticalc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Pharmaceutical_Annotation

Description of the use of a protein as a pharmaceutical drug.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c

Plasmidc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Plasmid

Description of a Plasmid
Is defined by
http://purl.uniprot.org/core/

Polymorphismc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Polymorphism_Annotation

Description of polymorphisms.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c

Propeptidec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Propeptide_Annotation

Extent of a propeptide.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Molecule Processing c

Proteinc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Protein

Description of a protein.
Is defined by
http://purl.uniprot.org/core/
has super-classes
thing c
has sub-classes
Not obsolete protein (record) c, Obsolete Protein c, Reviewed protein (records) c
is in domain of
annotation op, chainSequenceMapping op, classified with op, domain op, encoded by op, encoded in op, existence op, interaction op, isolatedFrom op, mapped citation op, old mnemonic op, potential sequence op, proteome component op
is disjoint with
Citation c, Cluster (UniRef) c, Sequence c

Protein existence evidencec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Protein_Existence

Is defined by
http://purl.uniprot.org/core/
is equivalent to
{ Evidence at protein level , Evidence at transcript level , Inferred from homology , Predicted , Uncertain }

Protein partc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Part

Description of a part of a protein.
Is defined by
http://purl.uniprot.org/core/
has super-classes
thing c
is in range of
domain op, part op, proteome component op

Proteomec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Proteome

Description of a proteome.
Is defined by
http://purl.uniprot.org/core/
has sub-classes
Reference_Proteome c, Representative_Proteome c
is in domain of
panproteome op, proteome exclusion reason dp
is in range of
panproteome op, redundantTo op

Proteome_Componentc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Proteome_Component

The component of a proteome. e.g. Chromosome, Contig or Plasmid
Is defined by
http://purl.uniprot.org/core/
has super-classes
thing c

PTMc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/PTM_Annotation

Description of a posttranslational modification.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c

Published Citationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Published_Citation

Is defined by
http://purl.uniprot.org/core/
has super-classes
Citation c
has sub-classes
Book Citation c, Electronic Citation c, Journal Citation c, Patent Citation c, Submission Citation c, Thesis Citation c
is in domain of
erratum op, erratum for op
is in range of
erratum op, erratum for op
is disjoint with
Unpublished Citation c

Redox Potentialc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Redox_Potential_Annotation

Reports the value of the standard (midpoint) oxido-reduction potential(s) for electron transport proteins.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Biophysicochemical Property c

Reference_Proteomec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Reference_Proteome

Some proteomes have been (manually and algorithmically) selected as reference proteomes.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Proteome c

Regionc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Region_Annotation

Is defined by
http://purl.uniprot.org/core/
has super-classes
Sequence Annotation c
has sub-classes
Coiled-Coil c, Compositionally Biased Region c, DNA Binding c, Domain Extent c, INTRAMEM c, Motif c, Repeat c, Topological Domain c, Transmembrane c, Zinc Finger c

Repeatc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Repeat_Annotation

Extent of an internal sequence repetition.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Region c

Representative_Proteomec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Representative_Proteome

A proteome that is believed by curators, or selected programmatically to be representative for a number of related Proteomes
Is defined by
http://purl.uniprot.org/core/
has super-classes
Proteome c

Resourcec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Resource

A life science resource.
Is defined by
http://purl.uniprot.org/core/
is equivalent to
database op some thing c
has sub-classes
Nucleotide Resource c, Structure Resource c, Transcript Resource c
is in domain of
database op, signature sequence match op

Reviewedc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Reviewed

The class of all reviewed records in the database (i.e. records that where looked at by a curator for integration into the database).
Is defined by
http://purl.uniprot.org/core/
is equivalent to
reviewed dp value true
has sub-classes
Reviewed protein (records) c

Reviewed protein (records)c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Reviewed_Protein

Is defined by
http://purl.uniprot.org/core/
has super-classes
Protein c, Reviewed c
is in domain of
nucleotideSequenceMappingIssue op

Ribosomal Frameshiftingc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Ribosomal_Frameshifting

Is defined by
http://purl.uniprot.org/core/
has super-classes
Alternative Products c

RNAc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/RNA

Is defined by
http://purl.uniprot.org/core/
has super-classes
Molecule c
has sub-classes
Genomic RNA c, Other RNA c, Transcribed RNA c, Unassigned RNA c, Viral cRNA c, mRNA c

RNA Editingc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/RNA_Editing_Annotation

Description of any type of RNA editing that leads to one or more amino acid changes.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c
is in domain of
frameshift dp

Secondary Structurec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Secondary_Structure_Annotation

Describes the secondary structure of proteins whose tertiary structure is known experimentally.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Sequence Annotation c
has sub-classes
Helix c, Strand c, Turn c

Self protein interactionc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Self_Interaction

Description of a self protein-protein interaction.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Interaction c

Sequencec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Sequence

An amino acid sequence.
Is defined by
http://purl.uniprot.org/core/
has sub-classes
Known Sequence c, Unknown Sequence c
is in domain of
MD5 checksum dp, length dp, member of op, predicted mass dp, seed for op, sequence for op
is in range of
member op, potential sequence op, sequence op
is disjoint with
Citation c, Cluster (UniRef) c, Protein c

Sequence Annotationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Sequence_Annotation

Description of a special region or site in a protein sequence.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c
has sub-classes
Experimental Information c, Modification c, Molecule Processing c, Natural Variation c, Region c, Secondary Structure c, Site c

Sequence Cautionc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Sequence_Caution_Annotation

Warning about possible errors related to the protein sequence
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c
has sub-classes
Erroneous Gene Model Prediction c, Erroneous Initiation c, Erroneous Termination c, Erroneous Translation c, Frameshift c

Sequence Conflictc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Sequence_Conflict_Annotation

Different sources report differing sequences.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Experimental Information c

Sequence Variantc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Natural_Variant_Annotation

Authors report that sequence variants exist.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Natural Variation c

Signal Peptidec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Signal_Peptide_Annotation

Extent of a signal sequence (prepeptide).
Is defined by
http://purl.uniprot.org/core/
has super-classes
Molecule Processing c

Similarityc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Similarity_Annotation

Description of the similarities (sequence or structural) of a protein with other proteins.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c

Simple Sequencec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Simple_Sequence

Is defined by
http://purl.uniprot.org/core/
has super-classes
Known Sequence c
is in domain of
fragment dp, precursor dp
is in range of
based on op

Sitec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Site_Annotation

Any interesting single amino-acid site on the sequence, that is not defined by another feature key. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Sequence Annotation c
has sub-classes
Active Site c, Binding Site c

Splice Variantc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Alternative_Sequence_Annotation

Description of sequence variants produced by alternative splicing.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Natural Variation c
is in range of
modification op

Statusc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Status

Indicator for the reliability of a piece of information.
Is defined by
http://purl.uniprot.org/core/

Strandc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Beta_Strand_Annotation

Beta strand regions within the experimentally determined protein structure
Is defined by
http://purl.uniprot.org/core/
has super-classes
Secondary Structure c

Structure Determinationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Structure_Determination_Method

An experimental method for determining the 3D structure of a protein.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Method c

Structure Mapping Statementc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Structure_Mapping_Statement

The relationship between a protein and a 3D structure.
Is defined by
http://purl.uniprot.org/core/
has super-classes
statement c
is in domain of
chain dp

Structure Resourcec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Structure_Resource

A resource that describes the 3D structure of a protein.
Is defined by
http://purl.uniprot.org/core/
is equivalent to
(method op only Structure Determination c) and (method op exactly 1)
has super-classes
Resource c
is in domain of
resolution in Angstrom dp

Structured_Namec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Structured_Name

A resource that holds a set of the known names for this protein together.
Is defined by
http://purl.uniprot.org/core/
is in domain of
structured name type dp
is in range of
alternativeName op, recommended name op, structured name op, submitted name op

Subcellular Locationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Subcellular_Location

Is defined by
http://purl.uniprot.org/core/
has sub-classes
Cellular Component c, Orientation c, Topology c
is in domain of
related location op
is in range of
encoded in op, related location op

Subcellular Location Annotationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Subcellular_Location_Annotation

Description of the subcellular location of the mature protein.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c
is in domain of
located in op

Submission Citationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Submission_Citation

Data that was submitted directly to a database.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Published Citation c
is in domain of
submitted to dp

Subunitc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Subunit_Annotation

Description of the quaternary structure of a protein.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c

Taxonc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Taxon

An element of a taxonomy for classifying life forms.
Is defined by
http://purl.uniprot.org/core/
has super-classes
has sub-classes
Not obsolete taxon (record) c, Obsolete Taxon c
is in domain of
common name op, complete dp, host op, other name op, part of lineage dp, rank op, scientific name op, strain op, synonym op
is in range of
common taxon op, host op, organism op

Taxon rankc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Rank

A rank of a taxon.
Is defined by
http://purl.uniprot.org/core/
is in range of
rank op

Temperature Dependencec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Temperature_Dependence_Annotation

Indicates the optimum temperature for enzyme activity and/or the variation of enzyme activity with temperature variation; the thermostability/thermolability of the enzyme is also mentioned when it is known.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Biophysicochemical Property c

Thesis Citationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Thesis_Citation

A Ph.D. thesis.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Published Citation c
is in domain of
institution dp

Tissuec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Tissue

A tissue such as lung or heart.
Is defined by
http://purl.uniprot.org/core/
is in range of
isolatedFrom op

Tissue Specificityc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Tissue_Specificity_Annotation

Description of the tissue specificity of a protein.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c

Topological Domainc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Topological_Domain_Annotation

A topological domain.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Region c

Topologyc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Topology

Is defined by
http://purl.uniprot.org/core/
has super-classes
Subcellular Location c
is in range of
topology op

Toxic Dosec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Toxic_Dose_Annotation

Information on the LD(50). LD stands for "Lethal Dose". LD(50) is the amount of a toxin, given all at once, which causes the death of 50% (one half) of a group of test animals.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Annotation c

Transcribed RNAc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Transcribed_RNA

Is defined by
http://purl.uniprot.org/core/
has super-classes
RNA c

Transcript Resourcec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Transcript_Resource

Is defined by
http://purl.uniprot.org/core/
has super-classes
Resource c
is in domain of
transcribed from op, translated to op

Transit Peptidec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Transit_Peptide_Annotation

Extent of a transit peptide (mitochondrion, chloroplast, thylakoid, cyanelle or microbody).
Is defined by
http://purl.uniprot.org/core/
has super-classes
Molecule Processing c

Transmembranec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Transmembrane_Annotation

Extent of a transmembrane region.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Region c

Transposonc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Transposon

A transposon
Is defined by
http://purl.uniprot.org/core/

Turnc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Turn_Annotation

Turns within the experimentally determined protein structure.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Secondary Structure c

Unassigned DNAc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Unassigned_DNA

Is defined by
http://purl.uniprot.org/core/
has super-classes
DNA c

Unassigned RNAc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Unassigned_RNA

Is defined by
http://purl.uniprot.org/core/
has super-classes
RNA c

Unknown Sequencec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Unknown_Sequence

Is defined by
http://purl.uniprot.org/core/
has super-classes
Sequence c

Unpublished Citationc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Unpublished_Citation

Is defined by
http://purl.uniprot.org/core/
has super-classes
Citation c
has sub-classes
Observation Citation c
is disjoint with
Published Citation c

Unsure Residuec back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Sequence_Uncertainty_Annotation

Used to describe region(s) of a sequence for which the authors are unsure about the sequence assignment.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Experimental Information c

Viral cRNAc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Viral_cRNA

Positive cRNA molecule that is made from from a single stranded genomic RNA.
Is defined by
http://purl.uniprot.org/core/
has super-classes
RNA c

Zinc Fingerc back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Zinc_Finger_Annotation

Extent of a zinc finger region.
Is defined by
http://purl.uniprot.org/core/
has super-classes
Region c

Object Properties

alternativeNameop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/alternativeName

A synonym of the recommended name.
Is defined by
http://purl.uniprot.org/core/
has super-properties
structured name op
has domain
Protein part c or Protein c
has range
Structured_Name c

annotationop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/annotation

Attaches an annotation to a resource.
Is defined by
http://purl.uniprot.org/core/
has domain
Protein c
has range
Annotation c

attributionop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/attribution

Is defined by
http://purl.uniprot.org/core/
has domain
Protein c or statement c
has range
Attribution c

based onop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/basedOn

The sequence on which the description of a modified sequence is based.
Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Modified Sequence c
has range
Simple Sequence c

catalytic activityop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/activity

The catalytic activity of an enzyme.
Is defined by
http://purl.uniprot.org/core/
has domain
Enzyme c
has range
Catalytic Activity c

catalytic activityop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/catalyticActivity

Is defined by
http://purl.uniprot.org/core/
has domain
Catalytic Activity Annotation c
has range
Catalytic Activity c

catalyzed physiological reactionop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/catalyzedPhysiologicalReaction

Is defined by
http://purl.uniprot.org/core/
has domain
Catalytic Activity Annotation c

catalyzed reactionop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/catalyzedReaction

Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Catalytic Activity c

categoryop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/category

Is defined by
http://purl.uniprot.org/core/
has domain
Database (description of) c

cellular componentop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/cellularComponent

Is defined by
http://purl.uniprot.org/core/
has domain
(cellular component op exactly 1 Cellular Component c) and (orientation op max 1 Orientation c) and (topology op max 1 Topology c)
has range
Cellular Component c

chainSequenceMappingop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/chainSequenceMapping

A mapping between a Sequence/Entry and aminoacids described in a PDB record.
Is defined by
http://purl.uniprot.org/core/
has domain
Protein c

citationop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/citation

A publication from which data was extracted, or which contains additional information.
Is defined by
http://purl.uniprot.org/core/
has domain
Cellular Component c or Database (description of) c or External Sequence c or Nucleotide Resource c or Orientation c or Protein c or Topology c
has range
Citation c

classified withop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/classifiedWith

A concept that classifies this resource.
Is defined by
http://purl.uniprot.org/core/
has domain
Protein c
has range
Concept c

cofactorop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/cofactor

Is defined by
http://purl.uniprot.org/core/
has domain
Cofactor c

common nameop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/commonName

Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has super-properties
name dp
has domain
Taxon c

common taxonop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/commonTaxon

Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Cluster (UniRef) c
has range
Taxon c

conflicting sequenceop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/conflictingSequence

Is defined by
http://purl.uniprot.org/core/
has domain
Protein c or Sequence Caution c or Sequence Conflict c
has range
External Sequence c

contextop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/context

Is defined by
http://purl.uniprot.org/core/
has domain
Citation Statement c

databaseop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/database

Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Resource c
has range
Database (description of) c

diseaseop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/disease

Is defined by
http://purl.uniprot.org/core/
has domain
Disease Annotation c
has range
Disease c

domainop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/domain

A domain of a protein.
Is defined by
http://purl.uniprot.org/core/
has super-properties
part op
has domain
Protein c
has range
Protein part c

encoded byop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/encodedBy

The gene by which a protein is encoded.
Is defined by
http://purl.uniprot.org/core/
has domain
Protein c
has range
Gene c

encoded inop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/encodedIn

The subcellular location where a protein is encoded.
Is defined by
http://purl.uniprot.org/core/
has domain
Protein c
has range
Subcellular Location c

enzymeop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/enzyme

The catalytic activity associated with a protein. or part of a protein.
Is defined by
http://purl.uniprot.org/core/
has domain
Protein part c or Protein c
has range
Enzyme c

enzyme classop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/enzymeClass

Is defined by
http://purl.uniprot.org/core/
has domain
Catalytic Activity c
has range
Enzyme c

erratumop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/erratum

An erratum for a publication.
Is defined by
http://purl.uniprot.org/core/
has domain
Published Citation c
has range
Published Citation c
is inverse of
erratum for op

erratum forop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/erratumFor

The publication which an erratum refers to.
Is defined by
http://purl.uniprot.org/core/
has domain
Published Citation c
has range
Published Citation c
is inverse of
erratum op

existenceop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/existence

Is defined by
http://purl.uniprot.org/core/
has domain
Protein c

hostop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/host

Is defined by
http://purl.uniprot.org/core/
has domain
Taxon c
has range
Taxon c

interactionop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/interaction

Is defined by
http://purl.uniprot.org/core/
has domain
Protein c
has range
Interaction c

isolatedFromop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/isolatedFrom

Is defined by
http://purl.uniprot.org/core/
has domain
Protein c
has range
Tissue c

ligandop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/ligand

Is defined by
http://purl.uniprot.org/core/
has domain
Binding Site c

ligand partop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/ligandPart

Is defined by
http://purl.uniprot.org/core/
has domain
Binding Site c

located inop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/locatedIn

Is defined by
http://purl.uniprot.org/core/
has domain
Subcellular Location Annotation c
has range
(cellular component op exactly 1 Cellular Component c) and (orientation op max 1 Orientation c) and (topology op max 1 Topology c)

located onop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/locatedOn

The molecule a this resource is located on.
Is defined by
http://purl.uniprot.org/core/
has domain
Nucleotide Resource c
has range
Molecule c

locus nameop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/locusName

Is defined by
http://purl.uniprot.org/core/
has super-properties
name dp
has domain
Gene c

mapped annotationop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/mappedAnnotation

Maps annotation to a resource. Used to link annotations/comments from external non UniProt sources via Citations to UniProt resources.
Is defined by
http://purl.uniprot.org/core/
has domain
Citation Statement c or Protein c
has range
Annotation c

mapped citationop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/mappedCitation

A publication from which data was by a extracted by a mapping from non UniProt origin, or which contains additional information.
Is defined by
http://purl.uniprot.org/core/
has domain
Protein c
has range
Citation c

memberop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/member

One of several similar resources.
Is defined by
http://purl.uniprot.org/core/
has domain
Cluster (UniRef) c
has range
Sequence c
is inverse of
member of op

member ofop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/memberOf

Is defined by
http://purl.uniprot.org/core/
has domain
Sequence c
has range
Cluster (UniRef) c
is inverse of
member op

methodop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/method

The experimental method that was used.
Is defined by
http://purl.uniprot.org/core/
has domain
Mass c or Structure Resource c
has range
Method c

Mnemonicop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/mnemonic

has super-properties
name dp
has domain
Cluster (UniRef) c or Protein c or Sequence c
is also defined as
data property

modificationop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/modification

A modification of a sequence.
Is defined by
http://purl.uniprot.org/core/
has domain
Modified Sequence c
has range
Splice Variant c

nucleotideSequenceMappingIssueop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/nucleotideSequenceMappingIssue

When a CDS differs substantially from a reviewed UniProtKB/Swiss-Prot sequence, the UniProt curators indicate the nature of the difference in the corresponding cross-reference.
Is defined by
http://purl.uniprot.org/core/
has domain
Reviewed protein (records) c
has range
Nucleotide Resource c

old mnemonicop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/oldMnemonic

has super-properties
name dp
has domain
Protein c
is also defined as
data property

organismop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/organism

The organism in which a protein occurs.
Is defined by
http://purl.uniprot.org/core/
has domain
Protein c or Sequence c
has range
Taxon c

orientationop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/orientation

Is defined by
http://purl.uniprot.org/core/
has domain
(cellular component op exactly 1 Cellular Component c) and (orientation op max 1 Orientation c) and (topology op max 1 Topology c)
has range
Orientation c

other nameop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/otherName

has super-properties
name dp
has domain
Taxon c
is also defined as
data property

panproteomeop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/panproteome

The current pan proteome sequences are derived from the reference proteome clusters (75% proteome similarity for Fungus and 55% proteome similarity for Archaea and Bacteria). A reference proteome cluster is also known as a representative proteome group (RPG) (Chen et al., 2011). A RPG contains similar proteomes calculated based on their co-membership in UniRef50 clusters. For each non-singleton reference proteome cluster, a pan proteome is a set of sequences consisting of all the sequences in the reference proteome, plus the addition of unique protein sequences that are found in other species or strains of the cluster but not in the reference proteome. These additional sequences are identified using UniRef50 membership.
Is defined by
http://purl.uniprot.org/core/
has domain
Proteome c
has range
Proteome c

partop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/part

Is defined by
http://purl.uniprot.org/core/
has sub-properties
domain op, proteome component op
has range
Protein part c

part ofop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/partOf

Is defined by
http://purl.uniprot.org/core/

participantop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/participant

A protein that participates in a protein-protein interaction.
Is defined by
http://purl.uniprot.org/core/
has domain
Interaction c
has range
Interaction participant c

potential sequenceop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/potentialSequence

This is a predicate added by an automated procedure to link entries/proteins that might be isoforms of each other.
Is defined by
http://purl.uniprot.org/core/
has domain
Protein c
has range
Sequence c

proteome componentop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/component

A component of a protein.
Is defined by
http://purl.uniprot.org/core/
has super-properties
part op
has domain
Protein c
has range
Protein part c

published inop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/publishedIn

Reserved predicate to link a citation to the Journal that it appeared in.
Is defined by
http://purl.uniprot.org/core/
has domain
Citation c
has range
Journal c

rangeop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/range

A specialization of faldo:location where all objects are faldo:Regions
Is defined by
http://purl.uniprot.org/core/
has super-properties
location op
has range
region

rankop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/rank

The rank of a taxon.
Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Taxon c
has range
Taxon rank c

recommended nameop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/recommendedName

The name recommended by the UniProt consortium.
Is defined by
http://purl.uniprot.org/core/
has super-properties
structured name op
has domain
Protein part c or Protein c
has range
Structured_Name c

redundantToop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/redundantTo

Indicates which proteome this proteome is redundant to.
Is defined by
http://purl.uniprot.org/core/
has domain
resource c
has range
Proteome c

related locationop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/relatedLocation

Is defined by
http://purl.uniprot.org/core/
has domain
Subcellular Location c
has range
Subcellular Location c

replaced byop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/replacedBy

A resource that replaces this resource.
Is defined by
http://purl.uniprot.org/core/
has domain
Enzyme c or Protein c or Taxon c
has range
Enzyme c or Protein c or Taxon c
is inverse of
replaces op

replacesop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/replaces

A resource that is replaced by this resource.
Is defined by
http://purl.uniprot.org/core/
has domain
Enzyme c or Protein c or Proteome c or Taxon c
has range
Obsolete c and (Enzyme c or Protein c or Proteome c or Taxon c)
is inverse of
replaced by op

representative forop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/representativeFor

Is defined by
http://purl.uniprot.org/core/

has characteristics: functional, inverse functional

has domain
Protein c or Sequence c
has range
Cluster (UniRef) c

scientific nameop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/scientificName

has characteristics: functional

has super-properties
name dp
has domain
Taxon c
is also defined as
data property

seed forop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/seedFor

Is defined by
http://purl.uniprot.org/core/
has domain
Sequence c
has range
Cluster (UniRef) c

sequenceop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/sequence

An amino acid sequence.
Is defined by
http://purl.uniprot.org/core/
has domain
Annotation c or Protein c or Resource c
has range
Sequence c
is inverse of
sequence for op

sequence discrepancyop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/sequenceDiscrepancy

Used when a CoDing Sequences (CDS) from the INSDC differs substantially from a reviewed UniProtKB/Swiss-Prot sequence, the UniProt curators indicate the nature of the difference as a rdfs:comment linked via this predicate.
Is defined by
http://purl.uniprot.org/core/
has domain
Nucleotide Resource c

sequence forop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/sequenceFor

A resource that describes this sequence.
Is defined by
http://purl.uniprot.org/core/
has domain
Sequence c
has range
Annotation c or Protein c or Resource c
is inverse of
sequence op

signature sequence matchop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/signatureSequenceMatch

Indicates that the signature described by the subject resource matches mathematically and that that match is described by the object of a triple using this property as predicate.
Is defined by
http://purl.uniprot.org/core/
has domain
Resource c

some members classified withop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/someMembersClassifiedWith

Indicates which GO terms are somewhat consistently used to annotate UniProtKB members of this cluster.
Is defined by
http://purl.uniprot.org/core/
has domain
Cluster (UniRef) c
has range
g o 0003674 c or g o 0005575 c or g o 0008150 c

sourceop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/source

Is defined by
http://purl.uniprot.org/core/
has domain
Attribution c

statusop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/status

Is deprecated
true

strainop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/strain

Is defined by
http://purl.uniprot.org/core/
has domain
Taxon c
has range
Strain c

structured nameop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/structuredName

Is defined by
http://purl.uniprot.org/core/
has sub-properties
alternativeName op, recommended name op, submitted name op
has domain
Protein part c or Protein c
has range
Structured_Name c

submitted nameop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/submittedName

A name provided by the submitter of the underlying nucleotide sequence.
Is defined by
http://purl.uniprot.org/core/
has super-properties
structured name op
has domain
Protein part c or Protein c
has range
Structured_Name c

synonymop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/synonym

has characteristics: functional

has super-properties
name dp
has domain
Taxon c
is also defined as
data property

topologyop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/topology

Is defined by
http://purl.uniprot.org/core/
has domain
(cellular component op exactly 1 Cellular Component c) and (orientation op max 1 Orientation c) and (topology op max 1 Topology c)
has range
Topology c

transcribed fromop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/transcribedFrom

Is defined by
http://purl.uniprot.org/core/
has domain
Transcript Resource c

translated fromop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/translatedFrom

Is defined by
http://purl.uniprot.org/core/
has domain
External Sequence c
has range
Nucleotide Resource c

translated toop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/translatedTo

Is defined by
http://purl.uniprot.org/core/
has domain
Transcript Resource c

withdrawnFromINSDCop back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/withdrawnFromINSDC

Is defined by
http://purl.uniprot.org/core/

Data Properties

abstractdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/abstract

True if the class does not have any direct instances.
Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Database (description of) c
has range
boolean

aliasdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/alias

An alternative name used in the flat text format.
Is defined by
http://purl.uniprot.org/core/
has range
string

allergen namedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/allergenName

See http://www.expasy.org/cgi-bin/lists?allergen.txt
Is defined by
http://purl.uniprot.org/core/
has super-properties
structured name type dp

atypicaldp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/atypical

Is defined by
http://purl.uniprot.org/core/
Is deprecated
true

authordp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/author

The author of a publication.
Is defined by
http://purl.uniprot.org/core/
has sub-properties
group dp
has domain
Citation c
has range
string

authorsIncompletedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/authorsIncomplete

Is defined by
http://purl.uniprot.org/core/
has domain
Citation c
has range
boolean

begindp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/begin

Is deprecated
true

biotechNamedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/biotechName

A name used in a biotechnological context.
Is defined by
http://purl.uniprot.org/core/
has super-properties
structured name type dp

CD molecule antigen namedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/cdAntigenName

A name from the Human Cell Differentiation Molecules (HCDM) nomenclature.
Is defined by
http://purl.uniprot.org/core/
has super-properties
structured name type dp

certaindp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/certain

False if there is any uncertainty about a statement.
Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Absorption c
has range
boolean

chaindp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/chain

Maps a series of symbols representing chains of a protein to a range of amino acids.
Is defined by
http://purl.uniprot.org/core/
has domain
Structure Mapping Statement c
has range
string

checksumdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/checksum

An caclulated value that is used to detect if there are errors in the sequence as shown due to among others IO errors. Both the crc64 and md5sum have collisions in UniProt data and cannot be used as unique keys.
Is defined by
http://purl.uniprot.org/core/
has sub-properties
MD5 checksum dp

cofactorLabeldp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/cofactorLabel

A cofactor required for a catalytic activity.
Is defined by
http://purl.uniprot.org/core/
has domain
Enzyme c
has range
string

completedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/complete

Is defined by
http://purl.uniprot.org/core/
has domain
Taxon c
has range
boolean

crc64 checksumdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/crc64Checksum

Is defined by
http://purl.uniprot.org/core/
Is deprecated
true

createddp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/created

The date a resource was created.
Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Protein c or Resource c or Sequence c
has range
date

curateddp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/curated

If true the described database has some level of curation.
Is defined by
http://purl.uniprot.org/core/
has domain
Database (description of) c
has range
boolean

datedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/date

Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Attribution c or Citation c

domainsdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/domains

Is deprecated
true

EC as a namedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/ecName

The ecName is the enzyme classification associated with a structured name of the protein. Proteins are often named after their enzymatic activity but can have more than one activity leading to multiple names.
Is defined by
http://purl.uniprot.org/core/
has super-properties
structured name type dp

editordp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/editor

The editor of a publication.
Is defined by
http://purl.uniprot.org/core/
has domain
Book Citation c
has range
string

enddp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/end

Is deprecated
true

experimentsdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/experiments

Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Interaction c
has range
int

fragmentdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/fragment

Indicates if a sequence is complete or consists of one or more fragments.
Is defined by
http://purl.uniprot.org/core/
has domain
Simple Sequence c
has range
{ "multiple" , "single" }

frameshiftdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/frameshift

True if a sequence modification causes a frameshift.
Is defined by
http://purl.uniprot.org/core/
has domain
RNA Editing c
has range
boolean

fullNamedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/fullName

The full name.
Is defined by
http://purl.uniprot.org/core/
has super-properties
structured name type dp

fuseddp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/fused

Is deprecated
true

groupdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/group

The group or consortium that authored a publication.
Is defined by
http://purl.uniprot.org/core/
has super-properties
author dp
has domain
Citation c
has range
string

heightdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/height

Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
image c
has range
int

hitsdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/hits

Is deprecated
true

identitydp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/identity

The level of sequence identity in a cluster.
Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Cluster (UniRef) c
has range
{ "0.5" , "0.9" , "1.0" }

implicitdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/implicit

True if existance of this resource can be inferred.
Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Database (description of) c
has range
boolean

institutiondp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/institution

The institution at which a thesis was written.
Is defined by
http://purl.uniprot.org/core/
has domain
Thesis Citation c
has range
string

international non proprietary namedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/internationalNonproprietaryName

The international nonproprietary name: A generic name for a pharmaceutical substance or active pharmaceutical ingredient that is globally recognized and is a public property.
Is defined by
http://purl.uniprot.org/core/
has super-properties
structured name type dp

lengthdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/length

Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Sequence c
has range
int

limitdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/limit

Is deprecated
true

link is explicitdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/linkIsExplicit

True if the Database is linked by an explicit action to UniProt, false if it is done using a simple hardcoded rule.
Is defined by
http://purl.uniprot.org/core/
has domain
Database (description of) c
has range
boolean

locatordp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/locator

Is defined by
http://purl.uniprot.org/core/
has domain
Citation c
has range
string

manualdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/manual

Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Attribution c
has range
boolean

maximumdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/maximum

A maximum value.
Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Absorption c
has range
float

MD5 checksumdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/md5Checksum

Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has super-properties
checksum dp
has domain
Sequence c
has range
string

measured activitydp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/measuredActivity

The maximum velocity, Vmax.
Is defined by
http://purl.uniprot.org/core/
has domain
Kinetics c
has range
string

measured affinitydp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/measuredAffinity

The Michaelis-Menten constant, Km.
Is defined by
http://purl.uniprot.org/core/
has domain
Kinetics c
has range
string

measured errordp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/measuredError

The magnitude of the error of a value that was measured.
Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Mass c
has range
float

measured valuedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/measuredValue

A value that was measured.
Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Mass c
has range
float

Mnemonicop back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/mnemonic

has range
string
is also defined as
object property

modified datedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/modified

The date a resource was last modified.
Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Cluster (UniRef) c or Protein c or Sequence c
has range
date

namedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/name

has sub-properties
Mnemonic op, common name op, locus name op, old mnemonic op, other name op, scientific name op, synonym op
has range
string

negativedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/negative

Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Interaction c
has range
boolean

obsoletedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/obsolete

True if this resource has been replaced or deleted.
Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Protein c or Taxon c
has range
boolean

old mnemonicop back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/oldMnemonic

has range
string
is also defined as
object property

ORF namedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/orfName

Is defined by
http://purl.uniprot.org/core/
has domain
Gene c
has range
string

other nameop back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/otherName

has range
string
is also defined as
object property

pagesdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/pages

The first and last page for a chapter or article.
Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Book Citation c or Journal Citation c
has range
string

part of lineagedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/partOfLineage

True for taxa that can appear as part of an organism's non abbreviated lineage. In the flatfile and XML views of an UniProt entry (as well as at INSDC) only these taxonomic nodes are shown.
Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Taxon c
has range
boolean

partialdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/partial

Is deprecated
true

place of publicationdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/place

The place where a publication was published. This usually includes a country name.
Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Book Citation c or Thesis Citation c
has range
string

positiondp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/position

Is deprecated
true

precursordp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/precursor

Is defined by
http://purl.uniprot.org/core/
has domain
Simple Sequence c
has range
boolean

predicted massdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/mass

The predicted mass of a sequence in Daltons.
Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Sequence c
has range
int

proteome exclusion reasondp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/exclusionReason

Indicates why the proteins of an Proteome where excluded from UniProtKB.
Is defined by
http://purl.uniprot.org/core/
has domain
Proteome c
has range
string

publisherdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/publisher

The publisher of a book.
Is defined by
http://purl.uniprot.org/core/
has domain
Book Citation c
has range
string

reference proteomedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/referenceProteome

Is defined by
http://purl.uniprot.org/core/
Is deprecated
true

representative proteomedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/representativeProteome

Is defined by
http://purl.uniprot.org/core/
Is deprecated
true

resolution in Angstromdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/resolution

The resolution of an experiment, in Angstrom.
Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Structure Resource c
has range
float

revieweddp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/reviewed

Indicates whether a resource has been reviewed by a curator.
Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Protein c or Taxon c
has range
boolean

scientific nameop back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/scientificName

has characteristics: functional

has range
string
is also defined as
object property

scopedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/scope

The extent of the work carried out by the authors of a publication.
Is defined by
http://purl.uniprot.org/core/
has domain
Citation Statement c
has range
string

short namedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/shortName

An abbreviation of the full name or an acronym.
Is defined by
http://purl.uniprot.org/core/
has super-properties
structured name type dp

shortCodendp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/shortCoden

Used to link a Journal to its shortCoden
Is defined by
http://purl.uniprot.org/core/
has domain
Journal c
has range
string

structured name typedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/structuredNameType

All names of the protein, from commonly used to obsolete, to used in the literature..
Is defined by
http://purl.uniprot.org/core/
has sub-properties
CD molecule antigen name dp, EC as a name dp, allergen name dp, biotechName dp, fullName dp, international non proprietary name dp, short name dp
has domain
Structured_Name c
has range
string

submitted todp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/submittedTo

The database a resource was submitted to.
Is defined by
http://purl.uniprot.org/core/
has domain
Submission Citation c

substitutiondp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/substitution

A replacement sequence.
Is defined by
http://purl.uniprot.org/core/
has domain
Mutagenesis Site c or Sequence Variant c or Sequence Conflict c
has range
string

synonymop back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/synonym

has characteristics: functional

has range
string
is also defined as
object property

titledp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/title

The title of a publication.
Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Citation c
has range
string

URI templatedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/uriTemplate

An string template that can be used to figure out from the database id what uri desribes it.
Is defined by
http://purl.uniprot.org/core/
has domain
Database (description of) c
has range
string

URL patterndp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/pattern

A URL pattern, used to generate links by substituting an identifier.
Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Database (description of) c
has range
string

URL templatedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/urlTemplate

An string template that can be used to figure out from the database id what html page talks about it.
Is defined by
http://purl.uniprot.org/core/
has domain
Database (description of) c
has range
string

versiondp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/version

Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Protein c or Sequence c
has range
int

volumedp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/volume

The volume a publication is part of.
Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Book Citation c or Journal Citation c

widthdp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/width

Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
image c
has range
int

xenodp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/xeno

Is defined by
http://purl.uniprot.org/core/

has characteristics: functional

has domain
Interaction c
has range
boolean

Legend back to ToC

c: Classes
op: Object Properties
dp: Data Properties

Acknowledgments back to ToC

The authors would like to thank Silvio Peroni for developing LODE, a Live OWL Documentation Environment, which is used for representing the Cross Referencing Section of this document and Daniel Garijo for developing Widoco, the program used to create the template used in this documentation.