For my PhD I used functional MRI, psychophysics and MR tractography to identify damage to the optic radiations caused by stroke and assessing the effect this has on visual fields, visual contrast sensitivity and the retinotopic map within the visual cortex.
I am continuing to use these methods to investigate perceptual learning as rehabilitation in hemianopia and neglect. I am also investigating gaze strategies in patients with hemianopia and neglect. Supervisors: Prof Jean-Claude Baron and Dr David Tolhurst
It is possible to discriminate between grating contrasts over a 300-fold contrast range, whereas ... more It is possible to discriminate between grating contrasts over a 300-fold contrast range, whereas V1 neurons have very limited dynamic ranges. Using populations of model neurons with contrast-response parameters taken from electrophysiological studies (cat and macaque), we investigated ways of combining responses to code contrast over the full range. One model implemented a pooling rule that retained information about individual response patterns. The second summed responses indiscriminately. We measured accuracy of contrast identification over a wide range of contrasts and found the first model to be more accurate; the mutual information between actual and estimated contrast was also greatest for this model. The accuracy peak for the population of cat neurons coincided with the peak of the distribution of contrasts in natural images, suggesting an ecological match. Macaque neurons seem better able to code contrasts that are slightly higher on average than those found in the natural environment.
Accurately tracing the optic radiations in living humans has important implications for studying ... more Accurately tracing the optic radiations in living humans has important implications for studying the relationship between tract structure or integrity and visual function, in health and disease. Probabilistic tractography is an established method for tracing white matter tracts in humans. Prior studies have used this method to trace the optic radiations, but operator-dependent factors, particularly variability in seed voxel placement and choice of connectivity threshold to select between tract and non-tract voxels, remain potential causes of significant variability. Methods using prior information to modify tract images risk introducing error by underestimating individual variability, particularly in subjects with abnormal anatomy. Finally, existing methods lack thorough validation against a histological standard, causing difficulty in evaluating individual methods, and quantitatively comparing methods. Here we describe a method for producing binary optic radiation images using an existing, well-validated tractography method. All stages are automated, including mask image generation, and thresholds are objectively selected by comparing tract images with existing probabilistic histological data in stereotaxic space. Data from two subject groups are presented; the first used to derive analysis parameters, and the second to test these parameters in an independent sample. Validation utilised a novel variant of receiver operating characteristic analysis, providing both justification for this method and a metric by which tractography methods might be compared generally. The resulting tracts match the histological data well; images generated in individuals matched the histological group data about as well as did images derived in individuals from that histological data set, with a low false positive rate.Copyright (c) 2009 Elsevier Inc. All rights reserved.
Individual V1 neurons respond dynamically over only limited ranges of stimulus contrasts, yet we ... more Individual V1 neurons respond dynamically over only limited ranges of stimulus contrasts, yet we can discriminate contrasts over a wide range. Different V1 neurons cover different parts of the contrast range, and the information they provide must be pooled somehow. We describe a probabilistic pooling model that shows that populations of neurons with contrast responses like those in cat and monkey V1 would most accurately code contrasts in the range actually found in natural scenes. The pooling equation is similar to Bayes's equation; however, explicit inclusion of prior probabilities in the inference increases coding accuracy only slightly.
Citicoline compared with placebo Citicoline given within 24 hours of a stroke seems more effectiv... more Citicoline compared with placebo Citicoline given within 24 hours of a stroke seems more effective at increasing the proportion of people completely recovered after 3 months but seems no more effective at reducing mortality in people with moderate to severe stroke ( moderate-quality ...
ABSTRACT INTRODUCTION: Stroke is the third most common cause of death in most developed countries... more ABSTRACT INTRODUCTION: Stroke is the third most common cause of death in most developed countries. It is a worldwide problem; about 4.5 million people die from stroke each year. Stroke can occur at any age, but half of all strokes occur in people aged over 70 years. About ...
It is possible to discriminate between grating contrasts over a 300-fold contrast range, whereas ... more It is possible to discriminate between grating contrasts over a 300-fold contrast range, whereas V1 neurons have very limited dynamic ranges. Using populations of model neurons with contrast-response parameters taken from electrophysiological studies (cat and macaque), we investigated ways of combining responses to code contrast over the full range. One model implemented a pooling rule that retained information about individual response patterns. The second summed responses indiscriminately. We measured accuracy of contrast identification over a wide range of contrasts and found the first model to be more accurate; the mutual information between actual and estimated contrast was also greatest for this model. The accuracy peak for the population of cat neurons coincided with the peak of the distribution of contrasts in natural images, suggesting an ecological match. Macaque neurons seem better able to code contrasts that are slightly higher on average than those found in the natural environment.
Accurately tracing the optic radiations in living humans has important implications for studying ... more Accurately tracing the optic radiations in living humans has important implications for studying the relationship between tract structure or integrity and visual function, in health and disease. Probabilistic tractography is an established method for tracing white matter tracts in humans. Prior studies have used this method to trace the optic radiations, but operator-dependent factors, particularly variability in seed voxel placement and choice of connectivity threshold to select between tract and non-tract voxels, remain potential causes of significant variability. Methods using prior information to modify tract images risk introducing error by underestimating individual variability, particularly in subjects with abnormal anatomy. Finally, existing methods lack thorough validation against a histological standard, causing difficulty in evaluating individual methods, and quantitatively comparing methods. Here we describe a method for producing binary optic radiation images using an existing, well-validated tractography method. All stages are automated, including mask image generation, and thresholds are objectively selected by comparing tract images with existing probabilistic histological data in stereotaxic space. Data from two subject groups are presented; the first used to derive analysis parameters, and the second to test these parameters in an independent sample. Validation utilised a novel variant of receiver operating characteristic analysis, providing both justification for this method and a metric by which tractography methods might be compared generally. The resulting tracts match the histological data well; images generated in individuals matched the histological group data about as well as did images derived in individuals from that histological data set, with a low false positive rate.Copyright (c) 2009 Elsevier Inc. All rights reserved.
Individual V1 neurons respond dynamically over only limited ranges of stimulus contrasts, yet we ... more Individual V1 neurons respond dynamically over only limited ranges of stimulus contrasts, yet we can discriminate contrasts over a wide range. Different V1 neurons cover different parts of the contrast range, and the information they provide must be pooled somehow. We describe a probabilistic pooling model that shows that populations of neurons with contrast responses like those in cat and monkey V1 would most accurately code contrasts in the range actually found in natural scenes. The pooling equation is similar to Bayes's equation; however, explicit inclusion of prior probabilities in the inference increases coding accuracy only slightly.
Citicoline compared with placebo Citicoline given within 24 hours of a stroke seems more effectiv... more Citicoline compared with placebo Citicoline given within 24 hours of a stroke seems more effective at increasing the proportion of people completely recovered after 3 months but seems no more effective at reducing mortality in people with moderate to severe stroke ( moderate-quality ...
ABSTRACT INTRODUCTION: Stroke is the third most common cause of death in most developed countries... more ABSTRACT INTRODUCTION: Stroke is the third most common cause of death in most developed countries. It is a worldwide problem; about 4.5 million people die from stroke each year. Stroke can occur at any age, but half of all strokes occur in people aged over 70 years. About ...
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