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Vol-1320
urn:nbn:de:0074-1320-6
Copyright ©
2014 for the individual papers
by the papers' authors. Copying permitted for private and academic purposes.
This volume is published and copyrighted by its editors.
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SWAT4LS 2014
Semantic Web Applications and Tools for Life Sciences
Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences
Berlin, Germany, December 9-11, 2014.
Edited by
*
Freie Universitaet Berlin, Department of Mathematics and Computer Science, AG Corporate Semantic Web, 14195 Berlin, Germany
**
School of Mathematical and Computer Sciences, Heriot-Watt University, and Human Genetics Unit, Medical Research Council, Edinburgh, Scotland, United Kingdom
*** IRCCS AOU San Martino - IST National Cancer Research Institute, Genova, Italy
****
MAASTRO Clinic, Maastricht, The Netherlands
*****
Novartis NIBR, Switzerland
Table of Contents
Full Papers
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SAFE: Policy Aware SPARQL Query Federation Over RDF Data Cubes
Yasar Khan, Muhammad Saleem, Aftab Iqbal, Muntazir Mehdi, Aidan Hogan, Axel-Cyrille Ngonga Ngomo, Stefan Decker, Ratnesh Sahay
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Scoring Semantic Annotations Returned by The NCBO Annotator
Soumia Melzi, Clement Jonquet
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Analysis and Visualization of Disease Courses in a Semantic Enabled Cancer Registry
Angel Esteban-Gil, Jesualdo Tomas Fernandez-Breis, Martin Boeker
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A SPARQL Endpoint Profiler for an Efficient Question Answering System
Yasunori Yamamoto
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Building a Semantic Web-based Metadata Repository for Facilitating Detailed Clinical Modeling in Cancer Genome Studies
Guoqian Jiang, Deepak Sharma, Harold Solbrig, Cui Tao, Chunhua Weng, Christopher Chute
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An Intelligent Ontology Alignment Tool Dealing with Complicated Mismatches
Efthymios Chondrogiannis, Vassiliki Andronikou, Efstathios Karanastasis, Theodora Varvarigou
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Leveraging Post-marketing Drug Safety Research through Semantic Technologies: The PharmacoVigilance Signal Detectors Ontology
Vassilis Koutkias, Marie-Christine Jaulent
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DebugIT: Ontology-mediated Layered Data Integration for Real-time Antibiotics Resistance Surveillance
Daniel Schober, Remy Choquet, Kristof Depraetere, Frank Enders, Philipp Daumke, Marie-Christine Jaulent, Douglas Teodoro, Emilie Pasche, Christian Lovis, Martin Boeker
Position Papers
Short Papers
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A Work Domain Ontology for Modeling Emergency Department Workflow
Cui Tao, Nnaemeka Okafor, Amit Mehta, Charles L. Maddow, David Robinson, Brent King, Jiajie Zhang, Amy Franklin
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Automatic Summarization for Terminology Recommendation: The Case of the NCBO Ontology Recommender
Pablo López-García, Stefan Schulz, Roman Kern
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Publishing Diachronic Life Science Linked Data
Katerina Gkirtzou, Thanasis Vergoulis, Artemis Hatzigeorgiou, Timos Sellis, Theodore Dalamagas
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A Semantic Web Platform for Automating the Interpretation of Finite Element Bio-simulations
Andre Freitas, Kartik Asooja, Joao Jares, Stefan Decker, Ratnesh Sahay
Posters
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Representing NCBO Annotator Results in Standard RDF with the Annotation Ontology
Soumia Melzi, Clement Jonquet
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Bring Your Own Data Workshops: A Mechanism to Aid Data Owners to Comply with Linked Data Best Practices
Marco Roos, Alasdair J G Gray, Andra Waagmeester, Mark Thompson, Rajaram Kaliyaperumal, Eelke van der Horst, Barend Mons, Mark Wilkinson
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Genome Annotation using Nanopublications: An Approach to Interoperability of Genetic Data
Rajaram Kaliyaperumal, Peter Bram 'T Hoen, Mark Thompson, Eelke van der Horst, Marco Roos
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Prototype Implementation of SPARQL Builder for Life-science Databases by Intelligent Schema Analysis on RDF datasets
Norio Kobayashi, Kai Lenz, Hongyan Wu, Kouji Kozaki, Atsuko Yamaguchi
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How Can Semantic Annotations Support the Identification of Network Similarities?
Christian Rosenke, Dagmar Waltemath
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Effects of Two-way Data Binding on Better User Experience and Easier Development of Clinical Information Systems
Nihad Omerbegovic, Nedim Omerbegovic, Abdulhamit Subasi
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Aber-OWL: A Framework for Ontology-based Data Access in Biology
Robert Hoehndorf, Luke Slater, Paul N. Schofield, Georgios Gkoutos
Demos
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Querying Life Science Ontologies with SemFacet
Bernardo Cuenca Grau, Evgeny Kharlamov, Sarunas Marciuska, Dmitriy Zheleznyakov, Yujiao Zhou
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Annotopia: An Open Source Universal Annotation Server for Biomedical Research
Paolo Ciccarese, Tim Clark
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OCMiner: Text Processing, Annotation and Relation Extraction for the Life Sciences
Timo Böhme, Matthias Irmer, Anett Püschel, Claudia Bobach, Ulf Laube, Lutz Weber
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Graphity: Generic Processor for Declarative Linked Data Applications
Martynas Jusevičius
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Using eXframe to Build Semantic Web Genomics Repositories
Emily Merrill, Shannan Ho Sui, Stéphane Corlosquet, Tim Clark, Sudeshna Das
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MaSyMoS: Finding Hidden Treasures in Model Repositories
Ron Henkel, Dagmar Waltemath
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D3SPARQL: JavaScript Library for Visualization of SPARQL Results
Toshiaki Katayama
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The NewProt Self-Service Portal for Protein Engineering
Andreas Schwarte, Hanka Venselaar, Peter Haase, Gert Vriend
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The CombineArchiveWeb Application - A Web-based Tool to Handle Files Associated with Modelling Results
Martin Scharm, Florian Wendland, Martin Peters, Markus Wolfien, Tom Theile, Dagmar Waltemath
2014-12-24: submitted by Adrian Paschke,
metadata incl. bibliographic data published under Creative Commons CC0
2014-12-24: published on CEUR-WS.org
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