WGCNA: Weighted Correlation Network Analysis
Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data as originally described in Horvath and Zhang (2005) <doi:10.2202/1544-6115.1128> and Langfelder and Horvath (2008) <doi:10.1186/1471-2105-9-559>. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.
| Version: |
1.73 |
| Depends: |
R (≥ 3.0), dynamicTreeCut (≥ 1.62), fastcluster |
| Imports: |
stats, grDevices, utils, matrixStats (≥ 0.8.1), Hmisc, impute, splines, foreach, doParallel, preprocessCore, survival, parallel, GO.db, AnnotationDbi, Rcpp (≥ 0.11.0) |
| LinkingTo: |
Rcpp |
| Suggests: |
org.Hs.eg.db, org.Mm.eg.db, infotheo, entropy, minet |
| Published: |
2024-09-18 |
| DOI: |
10.32614/CRAN.package.WGCNA |
| Author: |
Peter Langfelder [aut, cre],
Steve Horvath [aut],
Chaochao Cai [aut],
Jun Dong [aut],
Jeremy Miller [aut],
Lin Song [aut],
Andy Yip [aut],
Bin Zhang [aut] |
| Maintainer: |
Peter Langfelder <Peter.Langfelder at gmail.com> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: |
yes |
| Citation: |
WGCNA citation info |
| Materials: |
ChangeLog |
| In views: |
Omics |
| CRAN checks: |
WGCNA results |
Documentation:
Downloads:
Reverse dependencies:
| Reverse depends: |
diffcoexp, NetSAM |
| Reverse imports: |
BioM2, BioNAR, BioNERO, CEMiTool, csdR, DiPALM, DrDimont, eclust, fastLiquidAssociation, FREEtree, GmicR, GWENA, iNETgrate, Macarron, MCbiclust, miRSM, MODA, MRPC, multiWGCNA, netboost, Patterns, Pigengene, RegEnrich, scpoisson, seq2pathway, SPsimSeq, TIN |
| Reverse suggests: |
ADAPTS, BioCor, cola, DDPNA, fuzzyforest, GRaNIE, gsean, HiContacts, maGUI, scde, scGPS, scITD, spatialHeatmap, TRexSelector |
| Reverse enhances: |
dendextend |
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