NMF: Algorithms and Framework for Nonnegative Matrix Factorization
(NMF)
Provides a framework to perform Non-negative Matrix
Factorization (NMF). The package implements a set of already published algorithms
and seeding methods, and provides a framework to test, develop and plug
new/custom algorithms. Most of the built-in algorithms have been optimized
in C++, and the main interface function provides an easy way of performing
parallel computations on multicore machines.
| Version: |
0.28 |
| Depends: |
R (≥ 3.0.0), methods, utils, registry, rngtools (≥ 1.2.3), cluster |
| Imports: |
graphics, stats, stringr (≥ 1.0.0), digest, grid, grDevices, gridBase, colorspace, RColorBrewer, foreach, doParallel, ggplot2, reshape2, Biobase, codetools, BiocManager |
| Suggests: |
fastICA, doMPI, bigmemory (≥ 4.2), synchronicity (≥ 1.3.2), corpcor, xtable, devtools, knitr, RUnit |
| Published: |
2024-08-22 |
| DOI: |
10.32614/CRAN.package.NMF |
| Author: |
Renaud Gaujoux [aut],
Cathal Seoighe [aut],
Nicolas Sauwen [cre] |
| Maintainer: |
Nicolas Sauwen <nicolas.sauwen at openanalytics.eu> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: |
http://renozao.github.io/NMF/ |
| NeedsCompilation: |
yes |
| Citation: |
NMF citation info |
| Materials: |
README NEWS |
| CRAN checks: |
NMF results |
Documentation:
Downloads:
Reverse dependencies:
| Reverse depends: |
fabisearch, funOmics, InterSIM, IntNMF, musicatk, MutationalPatterns, signeR, SomaticSignatures, SparseSignatures |
| Reverse imports: |
clusterExperiment, DBNMFrank, debCAM, diceR, funOmics, hNMF, miRSM, pcaExplorer, projectR, SCdeconR, scITD, shattering, sigminer, SomaticSignatures, spectralAnalysis, SpNMF, SPOTlight |
| Reverse suggests: |
AUCell, cola, crassmat, Evacluster, iTOP, maftools, MAST, mia, mlr3pipelines, scone |
| Reverse enhances: |
fdm2id |
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