symphony: Efficient and Precise Single-Cell Reference Atlas Mapping

Implements the Symphony single-cell reference building and query mapping algorithms and additional functions described in Kang et al <https://www.nature.com/articles/s41467-021-25957-x>.

Version:	0.1.1
Depends:	R (≥ 3.5)
Imports:	methods, Rcpp, harmony, uwot, irlba, class, purrr, dplyr, ggplot2, stats, utils, magrittr, data.table, tibble, Matrix, tidyr, rlang, RColorBrewer, RANN
LinkingTo:	Rcpp, RcppArmadillo
Suggests:	knitr, rmarkdown, testthat, ggthemes, ggrastr, ggrepel
Published:	2023-01-16
DOI:	10.32614/CRAN.package.symphony
Author:	Joyce Kang [aut, cre], Ilya Korsunsky [aut], Soumya Raychaudhuri [aut]
Maintainer:	Joyce Kang <joyce_kang at hms.harvard.edu>
License:	GPL (≥ 3)
NeedsCompilation:	yes
Materials:	README
CRAN checks:	symphony results

Documentation:

Reference manual:	symphony.pdf
Vignettes:	Quickstart PBMCs Tutorial

Downloads:

Package source:	symphony_0.1.1.tar.gz
Windows binaries:	r-devel: symphony_0.1.1.zip, r-release: symphony_0.1.1.zip, r-oldrel: symphony_0.1.1.zip
macOS binaries:	r-release (arm64): symphony_0.1.1.tgz, r-oldrel (arm64): symphony_0.1.1.tgz, r-release (x86_64): symphony_0.1.1.tgz, r-oldrel (x86_64): symphony_0.1.1.tgz
Old sources:	symphony archive

Linking:

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