batchtools: Tools for Computation on Batch Systems
As a successor of the packages 'BatchJobs' and 'BatchExperiments',
this package provides a parallel implementation of the Map function for high
performance computing systems managed by schedulers 'IBM Spectrum LSF'
(<https://www.ibm.com/products/hpc-workload-management>),
'OpenLava' (<https://www.openlava.org/>), 'Univa Grid Engine'/'Oracle Grid
Engine' (<https://www.univa.com/>), 'Slurm' (<https://slurm.schedmd.com/>),
'TORQUE/PBS'
(<https://adaptivecomputing.com/cherry-services/torque-resource-manager/>),
or 'Docker Swarm' (<https://docs.docker.com/engine/swarm/>).
A multicore and socket mode allow the parallelization on a local machines,
and multiple machines can be hooked up via SSH to create a makeshift
cluster. Moreover, the package provides an abstraction mechanism to define
large-scale computer experiments in a well-organized and reproducible way.
| Version: |
0.9.17 |
| Depends: |
R (≥ 3.0.0) |
| Imports: |
backports (≥ 1.1.2), base64url (≥ 1.1), brew, checkmate (≥
1.8.5), data.table (≥ 1.11.2), digest (≥ 0.6.9), fs (≥
1.2.0), parallel, progress (≥ 1.1.1), R6, rappdirs, stats, stringi, utils, withr (≥ 2.0.0) |
| Suggests: |
debugme, doParallel, doMPI, e1071, foreach, future, future.batchtools, knitr, parallelMap, ranger, rmarkdown, rpart, snow, testthat, tibble |
| Published: |
2023-04-20 |
| DOI: |
10.32614/CRAN.package.batchtools |
| Author: |
Michel Lang  [cre,
aut],
Bernd Bischl [aut],
Dirk Surmann
[ctb] |
| Maintainer: |
Michel Lang <michellang at gmail.com> |
| BugReports: |
https://github.com/mllg/batchtools/issues |
| License: |
LGPL-3 |
| URL: |
https://github.com/mllg/batchtools |
| NeedsCompilation: |
yes |
| Citation: |
batchtools citation info |
| Materials: |
README NEWS |
| In views: |
HighPerformanceComputing |
| CRAN checks: |
batchtools results |
Documentation:
Downloads:
Reverse dependencies:
| Reverse depends: |
mlr3batchmark |
| Reverse imports: |
aslib, Certara.NLME8, Certara.R, epistasisGA, future.batchtools, InPAS, ldaPrototype, Rcwl |
| Reverse suggests: |
BiocParallel, bsseq, mlr, parallelMap, pulsar, scone, systemPipeR |
| Reverse enhances: |
simpleCache |
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