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ORCIDBMC Systems Biology, Volume 9 - Supplements
Volume 9, Number S-1, January 2015
- Likun Wang
, Luhe Yang, Zuohan Peng, Dan Lu, Yan Jin, Michael McNutt, Yuxin Yin:
cisPath: an R/Bioconductor package for cloud users for visualization and management of functional protein interaction networks. S1 - Caihua Wang, Juan Liu, Fei Luo, Zixing Deng, Qian-Nan Hu:
Predicting target-ligand interactions using protein ligand-binding site and ligand substructures. S2 - Guo-Xian Yu, Hailong Zhu, Carlotta Domeniconi, Maozu Guo:
Integrating multiple networks for protein function prediction. S3 - Shital K. Mishra, Sourav S. Bhowmick, Huey-Eng Chua, Fan Zhang, Jie Zheng:
Computational cell fate modelling for discovery of rewiring in apoptotic network for enhanced cancer drug sensitivity. S4 - Wen-Tsong Hsieh, Ke-Rung Tzeng, Jin-Shuei Ciou, Jeffrey J. P. Tsai, Nilubon Kurubanjerdjit, Chien-Hung Huang, Ka-Lok Ng:
Transcription factor and microRNA-regulated network motifs for cancer and signal transduction networks. S5 - Takehiro Shimoda, Shuji Suzuki, Masahito Ohue, Takashi Ishida, Yutaka Akiyama:
Protein-protein docking on hardware accelerators: comparison of GPU and MIC architectures. S6 - Hyundoo Jeong, Byung-Jun Yoon:
Accurate multiple network alignment through context-sensitive random walk. S7 - Hyun-hwan Jeong, So Kim, Kyubum Wee, Kyung-Ah Sohn:
Investigating the utility of clinical outcome-guided mutual information network in network-based Cox regression. S8 - Qingyao Wu, Zhenyu Wang, Chunshan Li, Yunming Ye, Yueping Li, Ning Sun:
Protein functional properties prediction in sparsely-label PPI networks through regularized non-negative matrix factorization. S9
Volume 9, Number S-2, April 2015
- Samuel A. Danziger, David J. Reiss, Alexander V. Ratushny, Jennifer J. Smith, Christopher L. Plaisier, John D. Aitchison, Nitin S. Baliga:
Bicluster Sampled Coherence Metric (BSCM) provides an accurate environmental context for phenotype predictions. S1 - Vladimir A. Ivanisenko, Olga V. Saik, Nikita V. Ivanisenko, Evgeny S. Tiys, Timofey V. Ivanisenko, Pavel S. Demenkov, Nikolay A. Kolchanov:
ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology. S2 - Ganiraju Manyam, Aybike Birerdinc, Ancha V. Baranova:
KPP: KEGG Pathway Painter. S3 - Andrey S. Glotov, Evgeny S. Tiys, Elena S. Vashukova, Vladimir S. Pakin, Pavel S. Demenkov, Olga V. Saik, Timofey V. Ivanisenko, Olga N. Arzhanova, Elena V. Mozgovaya, Marina S. Zainulina, Nikolay A. Kolchanov, Vladislav S. Baranov, Vladimir A. Ivanisenko:
Molecular association of pathogenetic contributors to pre-eclampsia (pre-eclampsia associome). S4
Volume 9, Number S-3, June 2015
- Chiara Fornari, Gianfranco Balbo, Sami M. Halawani, Omar M. Ba-Rukab, Ab Rahman Ahmad, Raffaele A. Calogero, Francesca Cordero, Marco Beccuti:
A versatile mathematical work-flow to explore how Cancer Stem Cell fate influences tumor progression. S1 - Celine Sin, Davide Chiarugi, Angelo Valleriani:
Single-molecule modeling of mRNA degradation by miRNA: Lessons from data. S2 - Eugenia Galeota, Caius Gavrila, Filippo Castiglione, Massimo Bernaschi, Gianni Cesareni:
The hierarchical organization of natural protein interaction networks confers self-organization properties on pseudocells. S3 - Salvatore Alaimo, Vincenzo Bonnici, Damiano Cancemi, Alfredo Ferro, Rosalba Giugno, Alfredo Pulvirenti:
DT-Web: a web-based application for drug-target interaction and drug combination prediction through domain-tuned network-based inference. S4 - Alfredo Pulvirenti, Rosalba Giugno, Rosario Distefano, Giuseppe Pigola, Misael Mongiovì, Girolamo Giudice, Vera Vendramin, Alessandro Lombardo, Federica Cattonaro, Alfredo Ferro:
A knowledge base for Vitis vinifera functional analysis. S5 - Nicolò Politi, Lorenzo Pasotti, Susanna Zucca, Paolo Magni:
Modelling the effects of cell-to-cell variability on the output of interconnected gene networks in bacterial populations. S6 - Paolo Paradisi, Paolo Allegrini, Davide Chiarugi:
A renewal model for the emergence of anomalous solute crowding in liposomes. S7 - Davide Chiarugi, Moreno Falaschi, Diana Hermith, Carlos Olarte, Luca Torella:
Modelling non-Markovian dynamics in biochemical reactions. S8
Volume 9, Number S-4, June 2015
- Hong Cai, Timothy G. Lilburn, Changjin Hong, Jianying Gu, Rui Kuang, Yufeng Wang:
Predicting and exploring network components involved in pathogenesis in the malaria parasite via novel subnetwork alignments. S1 - Liang-Chin Huang, Ergin Soysal, W. Jim Zheng, Zhongming Zhao, Hua Xu, Jingchun Sun:
A weighted and integrated drug-target interactome: drug repurposing for schizophrenia as a use case. S2
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