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2020 – today
- 2024
[j27]Rezarta Islamaj
, Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Tiago Melo Almeida, Richard A. A. Jonker, Sofia I R. Conceição, Diana F. Sousa, Cong-Phuoc Phan, Jung-Hsien Chiang, Jiru Li, Dinghao Pan, Wilailack Meesawad, Richard Tzong-Han Tsai, M. Janina Sarol, Gibong Hong, Airat Valiev, Elena Tutubalina, Shao-Man Lee, Yi-Yu Hsu, Mingjie Li, Karin Verspoor, Zhiyong Lu:
The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII. Database J. Biol. Databases Curation 2024 (2024)- [j26]Rezarta Islamaj, Chih-Hsuan Wei, Po-Ting Lai, Ling Luo, Cathleen Coss, Preeti Gokal Kochar, Nicholas Miliaras, Oleg Rodionov, Keiko Sekiya, Dorothy Trinh, Deborah Whitman, Zhiyong Lu:
The biomedical relationship corpus of the BioRED track at the BioCreative VIII challenge and workshop. Database J. Biol. Databases Curation 2024 (2024) - [i12]Chih-Hsuan Wei, Alexis Allot, Po-Ting Lai, Robert Leaman, Shubo Tian, Ling Luo, Qiao Jin, Zhizheng Wang, Qingyu Chen, Zhiyong Lu:
PubTator 3.0: an AI-powered Literature Resource for Unlocking Biomedical Knowledge. CoRR abs/2401.11048 (2024) - [i11]Po-Ting Lai, Elisabeth Coudert, Lucila Aimo, Kristian B. Axelsen, Lionel Breuza, Edouard De Castro, Marc Feuermann, Anne Morgat, Lucille Pourcel, Ivo Pedruzzi, Sylvain Poux, Nicole Redaschi, Catherine Rivoire, Anastasia Sveshnikova, Chih-Hsuan Wei, Robert Leaman, Ling Luo, Zhiyong Lu, Alan J. Bridge:
EnzChemRED, a rich enzyme chemistry relation extraction dataset. CoRR abs/2404.14209 (2024) - [i10]Zhizheng Wang, Qiao Jin, Chih-Hsuan Wei, Shubo Tian, Po-Ting Lai, Qingqing Zhu, Chi-Ping Day, Christina Ross, Zhiyong Lu:
GeneAgent: Self-verification Language Agent for Gene Set Knowledge Discovery using Domain Databases. CoRR abs/2405.16205 (2024) - [i9]Qiao Jin, Nicholas Wan, Robert Leaman, Shubo Tian, Zhizheng Wang, Yifan Yang, Zifeng Wang, Guangzhi Xiong, Po-Ting Lai, Qingqing Zhu, Benjamin Hou, Maame Sarfo-Gyamfi, Gongbo Zhang, Aidan Gilson, Balu Bhasuran, Zhe He, Aidong Zhang, Jimeng Sun, Chunhua Weng, Ronald M. Summers, Qingyu Chen, Yifan Peng, Zhiyong Lu:
Demystifying Large Language Models for Medicine: A Primer. CoRR abs/2410.18856 (2024) - 2023
- [j25]Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Robert Leaman, Qingyu Chen, Zhiyong Lu:
AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning. Bioinform. 39(5) (2023) - [j24]Chih-Hsuan Wei, Ling Luo, Rezarta Islamaj, Po-Ting Lai, Zhiyong Lu:
GNorm2: an improved gene name recognition and normalization system. Bioinform. 39(10) (2023) - [j23]Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Qingyu Chen, Zhiyong Lu:
BioREx: Improving biomedical relation extraction by leveraging heterogeneous datasets. J. Biomed. Informatics 146: 104487 (2023) - [i8]Shubo Tian, Qiao Jin, Lana Yeganova, Po-Ting Lai, Qingqing Zhu, Xiuying Chen, Yifan Yang, Qingyu Chen, Won Kim, Donald C. Comeau, Rezarta Islamaj, Aadit Kapoor, Xin Gao, Zhiyong Lu:
Opportunities and Challenges for ChatGPT and Large Language Models in Biomedicine and Health. CoRR abs/2306.10070 (2023) - [i7]Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Qingyu Chen, Zhiyong Lu:
BioREx: Improving Biomedical Relation Extraction by Leveraging Heterogeneous Datasets. CoRR abs/2306.11189 (2023) - 2022
- [j22]Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu:
BioRED: a rich biomedical relation extraction dataset. Briefings Bioinform. 23(5) (2022) - [j21]Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Qingyu Chen, Rezarta Islamaj, Zhiyong Lu:
Assigning species information to corresponding genes by a sequence labeling framework. Database J. Biol. Databases Curation 2022(2022) (2022) - [j20]Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Zhiyong Lu:
A sequence labeling framework for extracting drug-protein relations from biomedical literature. Database J. Biol. Databases Curation 2022(2022) (2022) - [j19]Shankai Yan, Ling Luo, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu:
PhenoRerank: A re-ranking model for phenotypic concept recognition pre-trained on human phenotype ontology. J. Biomed. Informatics 129: 104059 (2022) - [c7]Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu:
BioRED: A Comprehensive Biomedical Relation Extraction Dataset. AMIA 2022 - [i6]Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu:
BioRED: A Comprehensive Biomedical Relation Extraction Dataset. CoRR abs/2204.04263 (2022) - [i5]Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Qingyu Chen, Rezarta Islamaj Dogan, Zhiyong Lu:
Assigning Species Information to Corresponding Genes by a Sequence Labeling Framework. CoRR abs/2205.03853 (2022) - [i4]Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Robert Leaman, Qingyu Chen, Zhiyong Lu:
AIONER: All-in-one scheme-based biomedical named entity recognition using deep learning. CoRR abs/2211.16944 (2022) - 2021
- [j18]Po-Ting Lai, Zhiyong Lu:
BERT-GT: cross-sentence n-ary relation extraction with BERT and Graph Transformer. Bioinform. 36(24): 5678-5685 (2021) - [j17]Ling Luo, Shankai Yan, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu:
PhenoTagger: a hybrid method for phenotype concept recognition using human phenotype ontology. Bioinform. 37(13): 1884-1890 (2021) - [i3]Po-Ting Lai, Zhiyong Lu:
BERT-GT: Cross-sentence n-ary relation extraction with BERT and Graph Transformer. CoRR abs/2101.04158 (2021) - 2020
- [j16]Ming-Siang Huang, Po-Ting Lai, Pei-Yen Lin, Yu-Ting You, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Biomedical named entity recognition and linking datasets: survey and our recent development. Briefings Bioinform. 21(6): 2219-2238 (2020) - [c6]Po-Ting Lai, Yu-Hao Chiu, Chieh-Wen Lu, Kuang-Hsiang Liu, Tung-Liang Chiu, Wendy Chen:
Development and Validation of a Novel Reliable Method for Wet Testing on Biochemical Chip. ITC-Asia 2020: 25-30 - [i2]Ling Luo, Shankai Yan, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu:
PhenoTagger: A Hybrid Method for Phenotype Concept Recognition using Human Phenotype Ontology. CoRR abs/2009.08478 (2020)
2010 – 2019
- 2019
- [i1]Ming-Siang Huang, Po-Ting Lai, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Revised JNLPBA Corpus: A Revised Version of Biomedical NER Corpus for Relation Extraction Task. CoRR abs/1901.10219 (2019) - 2018
- [j15]Po-Ting Lai, Ming-Siang Huang, Ting-Hao Yang, Wen-Lian Hsu, Richard Tzong-Han Tsai:
Statistical principle-based approach for gene and protein related object recognition. J. Cheminformatics 10(1): 64:1-64:9 (2018) - 2017
- [c5]Jing Cyun Tu, Po-Ting Lai, Richard Tzong-Han Tsai:
Enhancing Drug-Drug Interaction Classification with Corpus-level Feature and Classifier Ensemble. DDDSM@IJCNLP 2017: 52-56 - 2016
- [j14]Hong-Jie Dai, Chu-Hsien Su, Po-Ting Lai, Ming-Siang Huang, Jitendra Jonnagaddala, Toni Rose Jue, Shruti Rao, Hui-Jou Chou, Marija Milacic, Onkar Singh, Syed Abdul Shabbir, Wen-Lian Hsu:
MET network in PubMed: a text-mined network visualization and curation system. Database J. Biol. Databases Curation 2016 (2016) - [j13]Po-Ting Lai, Yu-Yan Lo, Ming-Siang Huang, Yu-Cheng Hsiao, Richard Tzong-Han Tsai:
BelSmile: a biomedical semantic role labeling approach for extracting biological expression language from text. Database J. Biol. Databases Curation 2016 (2016) - [j12]Richard Tzong-Han Tsai, Yu-Cheng Hsiao, Po-Ting Lai:
NERChem: adapting NERBio to chemical patents via full-token features and named entity feature with chemical sub-class composition. Database J. Biol. Databases Curation 2016 (2016) - 2015
- [j11]Hong-Jie Dai, Po-Ting Lai, Yung-Chun Chang, Richard Tzong-Han Tsai:
Enhancing of chemical compound and drug name recognition using representative tag scheme and fine-grained tokenization. J. Cheminformatics 7(S-1): S14 (2015) - 2014
- [j10]Richard Tzong-Han Tsai, Po-Ting Lai:
A resource-saving collective approach to biomedical semantic role labeling. BMC Bioinform. 15: 160 (2014) - [c4]Sheng-Wei Chen, Po-Ting Lai, Yi-Lin Tsai, Jay Kuan-Chieh Chung, Sherry Shih-Huan Hsiao, Richard Tzong-Han Tsai:
NCU IISR System for NTCIR-11 MedNLP-2 Task. NTCIR 2014 - [c3]Yueh-Lin Yang, Po-Ting Lai, Richard Tzong-Han Tsai:
A Hybrid System for Temporal Relation Extraction from Discharge Summaries. TAAI 2014: 379-386 - 2012
- [j9]Hong-Jie Dai, Chun-Yu Chen, Chi-Yang Wu, Po-Ting Lai, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Coreference resolution of medical concepts in discharge summaries by exploiting contextual information. J. Am. Medical Informatics Assoc. 19(5): 888-896 (2012) - 2011
- [j8]Richard Tzong-Han Tsai, Po-Ting Lai:
Dynamic programming re-ranking for PPI interactor and pair extraction in full-text articles. BMC Bioinform. 12: 60 (2011) - [j7]Yu-Ching Fang, Po-Ting Lai, Hong-Jie Dai, Wen-Lian Hsu:
MeInfoText 2.0: gene methylation and cancer relation extraction from biomedical literature. BMC Bioinform. 12: 471 (2011) - [j6]Richard Tzong-Han Tsai, Po-Ting Lai:
Multi-stage gene normalization for full-text articles with context-based species filtering for dynamic dictionary entry selection. BMC Bioinform. 12(S-8): S7 (2011) - [j5]Po-Ting Lai, Richard Tzong-Han Tsai:
A Dynamic Programming Re-ranking Approach to Enhance PPI Interactor Extraction. Inf. Media Technol. 6(1): 35-38 (2011) - 2010
- [j4]Richard Tzong-Han Tsai, Po-Ting Lai:
Using Contextual Information to Clarify Cross-Species Gene Normalization Ambiguity. Int. J. Softw. Eng. Knowl. Eng. 20(2): 197-214 (2010) - [j3]Hong-Jie Dai, Po-Ting Lai, Richard Tzong-Han Tsai:
Multistage Gene Normalization and SVM-Based Ranking for Protein Interactor Extraction in Full-Text Articles. IEEE ACM Trans. Comput. Biol. Bioinform. 7(3): 412-420 (2010) - [c2]Hong-Jie Dai, Po-Ting Lai, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Global Ranking via Data Fusion. COLING (Posters) 2010: 223-231
2000 – 2009
- 2009
- [j2]Richard Tzong-Han Tsai, Hong-Jie Dai, Po-Ting Lai, Chi-Hsin Huang:
PubMed-EX: a web browser extension to enhance PubMed search with text mining features. Bioinform. 25(22): 3031-3032 (2009) - [j1]Richard Tzong-Han Tsai, Po-Ting Lai, Hong-Jie Dai, Chi-Hsin Huang, Yue-Yang Bow, Yen-Ching Chang, Wen-Harn Pan, Wen-Lian Hsu:
HypertenGene: extracting key hypertension genes from biomedical literature with position and automatically-generated template features. BMC Bioinform. 10(S-15): 9 (2009) - [c1]Po-Ting Lai, Yue-Yang Bow, Chi-Hsin Huang, Hong-Jie Dai, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Using Contextual Information to Clarify Gene Normalization Ambiguity. IRI 2009: 1-5
Coauthor Index
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last updated on 2024-12-08 01:27 CET by the dblp team
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