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2020 – today
- 2022
[j9]Palash Sashittal, Simone Zaccaria, Mohammed El-Kebir:
Parsimonious Clone Tree Integration in cancer. Algorithms Mol. Biol. 17(1): 3 (2022)- [j8]Zubair Lalani, Gillian Chu
, Silas Hsu, Shaw Kagawa, Michael Xiang, Simone Zaccaria, Mohammed El-Kebir:
CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing data. PLoS Comput. Biol. 18(10): 1010614 (2022) - 2021
- [c5]Palash Sashittal, Simone Zaccaria, Mohammed El-Kebir:
Parsimonious Clone Tree Reconciliation in Cancer. WABI 2021: 9:1-9:21 - 2020
- [j7]Matthew A. Myers, Simone Zaccaria, Benjamin J. Raphael:
Identifying tumor clones in sparse single-cell mutation data. Bioinform. 36(Supplement-1): i186-i193 (2020) - [c4]Gryte Satas, Simone Zaccaria, Geoffrey Mon, Benjamin J. Raphael:
Single-Cell Tumor Phylogeny Inference with Copy-Number Constrained Mutation Losses. RECOMB 2020: 273
2010 – 2019
- 2018
- [j6]Stefano Beretta, Murray Patterson, Simone Zaccaria, Gianluca Della Vedova, Paola Bonizzoni:
HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads. BMC Bioinform. 19(1): 252:1-252:19 (2018) - [j5]Simone Zaccaria, Mohammed El-Kebir, Gunnar W. Klau, Benjamin J. Raphael:
Phylogenetic Copy-Number Factorization of Multiple Tumor Samples. J. Comput. Biol. 25(7): 689-708 (2018) - 2017
- [b1]Simone Zaccaria:
Inferring Genomic Variants and their Evolution: Combinatorial Optimization for Haplotype Assembly and Quantification of Intra-Tumor Heterogeneity. University of Milan, Italy, 2017 - [j4]Mohammed El-Kebir, Benjamin J. Raphael, Ron Shamir, Roded Sharan, Simone Zaccaria, Meirav Zehavi, Ron Zeira:
Complexity and algorithms for copy-number evolution problems. Algorithms Mol. Biol. 12(1): 13:1-13:11 (2017) - [c3]Simone Zaccaria, Mohammed El-Kebir, Gunnar W. Klau, Benjamin J. Raphael:
The Copy-Number Tree Mixture Deconvolution Problem and Applications to Multi-sample Bulk Sequencing Tumor Data. RECOMB 2017: 318-335 - 2016
- [j3]Yuri Pirola, Simone Zaccaria, Riccardo Dondi, Gunnar W. Klau, Nadia Pisanti, Paola Bonizzoni:
HapCol: accurate and memory-efficient haplotype assembly from long reads. Bioinform. 32(11): 1610-1617 (2016) - [j2]Paola Bonizzoni, Riccardo Dondi, Gunnar W. Klau, Yuri Pirola, Nadia Pisanti, Simone Zaccaria:
On the Minimum Error Correction Problem for Haplotype Assembly in Diploid and Polyploid Genomes. J. Comput. Biol. 23(9): 718-736 (2016) - [c2]Mohammed El-Kebir, Benjamin J. Raphael, Ron Shamir, Roded Sharan, Simone Zaccaria, Meirav Zehavi, Ron Zeira:
Copy-Number Evolution Problems: Complexity and Algorithms. WABI 2016: 137-149 - 2015
- [c1]Paola Bonizzoni, Riccardo Dondi, Gunnar W. Klau, Yuri Pirola, Nadia Pisanti, Simone Zaccaria:
On the Fixed Parameter Tractability and Approximability of the Minimum Error Correction Problem. CPM 2015: 100-113 - 2013
- [j1]Eyla Willing, Simone Zaccaria, Marília D. V. Braga, Jens Stoye:
On the inversion-indel distance. BMC Bioinform. 14(S-15): S3 (2013)
Coauthor Index
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