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2020 – today
- 2022
[j12]Enis Afgan, Anton Nekrutenko, Björn A. Grüning, Daniel J. Blankenberg, Jeremy Goecks, Michael C. Schatz, Alexander E. Ostrovsky, Alexandru Mahmoud, Andrew J. Lonie, Anna Syme, Anne Fouilloux, Anthony Bretaudeau, Anup Kumar, Arthur C. Eschenlauer, Assunta D. Desanto, Aysam Guerler, Beatriz Serrano-Solano, Bérénice Batut, Bradley W. Langhorst, Bridget Carr, Bryan A. Raubenolt, Cameron J. Hyde, Catherine J. Bromhead, Christopher B. Barnett, Coline Royaux, Cristóbal Gallardo, Daniel J. Fornika, Dannon Baker, Dave Bouvier, Dave Clements, David A. de Lima Morais, David Lopez Tabernero, Delphine Larivière, Engy Nasr, Federico Zambelli, Florian Heyl, Fotis E. Psomopoulos, Frederik Coppens, Gareth R. Price, Gianmauro Cuccuru, Gildas Le Corguillé, Gregory Von Kuster, Gulsum Gudukbay, Helena Rasche, Hans-Rudolf Hotz, Ignacio Eguinoa, Igor V. Makunin, Isuru Ranawaka, James Taylor, Jayadev Joshi, Jennifer Hillman-Jackson, John Chilton, Kaivan Kamali, Keith Suderman, Krzysztof Poterlowicz, Yvan Le Bras, Lucille Lopez-Delisle, Luke Sargent, Madeline E. Bassetti, Marco Antonio Tangaro, Marius van den Beek, Martin Cech, Matthias Bernt, Matthias Fahrner, Mehmet Tekman, Melanie Christine Föll, Michael R. Crusoe, Miguel Roncoroni, Natalie Kucher, Nate Coraor, Nicholas Stoler, Nick Rhodes, Nicola Soranzo, Niko Pinter, Nuwan Goonasekera, Pablo A. Moreno, Pavankumar Videm, Petera Melanie, Pietro Mandreoli, Pratik D. Jagtap, Qiang Gu, Ralf J. M. Weber, Ross Lazarus, Ruben H. P. Vorderman, Saskia D. Hiltemann, Sergey Golitsynskiy, Shilpa Garg, Simon A. Bray, Simon L. Gladman, Simone Leo, Subina P. Mehta, Timothy J. Griffin, Vahid Jalili, Yves Vandenbrouck, Victor Wen, Vijay K. Nagampalli, Wendi A. Bacon, Willem L. De Koning, Wolfgang Maier, Peter J. Briggs:
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update. Nucleic Acids Res. 50(W1): 345-351 (2022)- 2021
- [j11]Qiang Gu, Anup Kumar
, Simon Bray, Allison Creason, Alireza Khanteymoori, Vahid Jalili, Björn A. Grüning, Jeremy Goecks:
Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine. PLoS Comput. Biol. 17(6) (2021) - 2020
- [j10]Vahid Jalili, Enis Afgan, James Taylor, Jeremy Goecks:
Cloud bursting galaxy: federated identity and access management. Bioinform. 36(1): 1-9 (2020) - [j9]Vahid Jalili, Enis Afgan, Qiang Gu, Dave Clements, Daniel J. Blankenberg, Jeremy Goecks, James Taylor, Anton Nekrutenko:
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update. Nucleic Acids Res. 48(Webserver-Issue): W395-W402 (2020)
2010 – 2019
- 2019
- [j8]Vahid Jalili, Matteo Matteucci, Jeremy Goecks, Yashar Deldjoo, Stefano Ceri:
Next Generation Indexing for Genomic Intervals. IEEE Trans. Knowl. Data Eng. 31(10): 2008-2021 (2019) - 2018
- [j7]Vahid Jalili, Matteo Matteucci, Marco Masseroli, Marco J. Morelli:
Using combined evidence from replicates to evaluate ChIP-seq peaks. Bioinform. 34(13): 2338 (2018) - [j6]Enis Afgan, Dannon Baker, Bérénice Batut, Marius van den Beek, Dave Bouvier, Martin Cech, John Chilton, Dave Clements, Nate Coraor, Björn A. Grüning, Aysam Guerler, Jennifer Hillman-Jackson, Saskia D. Hiltemann, Vahid Jalili, Helena Rasche, Nicola Soranzo, Jeremy Goecks, James Taylor, Anton Nekrutenko, Daniel J. Blankenberg:
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update. Nucleic Acids Res. 46(Webserver-Issue): W537-W544 (2018) - [c1]Enis Afgan, Vahid Jalili, Nuwan Goonasekera, James Taylor, Jeremy Goecks:
Federated Galaxy: Biomedical Computing at the Frontier. IEEE CLOUD 2018: 871-874 - 2017
- [j5]Vahid Jalili, Matteo Matteucci, Marco J. Morelli, Marco Masseroli:
MuSERA: Multiple Sample Enriched Region Assessment. Briefings Bioinform. 18(3): 367-381 (2017) - [j4]Vahid Jalili, Matteo Matteucci, Marco Masseroli, Stefano Ceri:
Explorative visual analytics on interval-based genomic data and their metadata. BMC Bioinform. 18(1): 536:1-536:15 (2017) - [j3]Vahid Jalili, Matteo Matteucci, Marco Masseroli, Stefano Ceri:
Indexing Next-Generation Sequencing data. Inf. Sci. 384: 90-109 (2017) - [i1]Vahid Jalili:
Reasoning with shapes: profiting cognitive susceptibilities to infer linear mapping transformations between shapes. CoRR abs/1709.00158 (2017) - 2016
- [b1]Vahid Jalili:
Efficient data structures for cross-samples inferences on genomic data. Polytechnic University of Milan, Italy, 2016 - 2015
- [j2]Marco Masseroli, Pietro Pinoli, Francesco Venco, Abdulrahman Kaitoua, Vahid Jalili, Fernando Palluzzi, Heiko Müller, Stefano Ceri:
GenoMetric Query Language: a novel approach to large-scale genomic data management. Bioinform. 31(12): 1881-1888 (2015) - [j1]Vahid Jalili, Matteo Matteucci, Marco Masseroli, Marco J. Morelli:
Using combined evidence from replicates to evaluate ChIP-seq peaks. Bioinform. 31(17): 2761-2769 (2015)
Coauthor Index
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