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Aleksandra M. Walczak
Person information
- affiliation: École Normale Supérieure, Paris, France
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2020 – today
- 2023
- [i4]Francesco Camaglia, Ilya Nemenman, Thierry Mora, Aleksandra M. Walczak:
Bayesian estimation of the Kullback-Leibler divergence for categorical sytems using mixtures of Dirichlet priors. CoRR abs/2307.04201 (2023) - 2022
- [j21]Kamesh Krishnamurthy, Ann M. Hermundstad, Thierry Mora, Aleksandra M. Walczak, Vijay Balasubramanian:
Disorder and the Neural Representation of Complex Odors. Frontiers Comput. Neurosci. 16 (2022) - [j20]Cosimo Lupo
, Natanael Spisak
, Aleksandra M. Walczak
, Thierry Mora
:
Learning the statistics and landscape of somatic mutation-induced insertions and deletions in antibodies. PLoS Comput. Biol. 18(6) (2022) - 2021
- [j19]Vedant Sachdeva, Thierry Mora, Aleksandra M. Walczak, Stephanie E. Palmer
:
Optimal prediction with resource constraints using the information bottleneck. PLoS Comput. Biol. 17(3) (2021) - [j18]Barbara Bravi
, Vinod P. Balachandran, Benjamin D. Greenbaum, Aleksandra M. Walczak, Thierry Mora, Rémi Monasson
, Simona Cocco
:
Probing T-cell response by sequence-based probabilistic modeling. PLoS Comput. Biol. 17(9) (2021) - [i3]Federica Ferretti, Victor Chardès, Thierry Mora, Aleksandra M. Walczak, Irene Giardina:
The Connection between Discrete- and Continuous-Time Descriptions of Gaussian Continuous Processes. CoRR abs/2101.06482 (2021) - [i2]Giulio Isacchini, Natanael Spisak, Armita Nourmohammad, Thierry Mora, Aleksandra M. Walczak:
MINIMALIST: Mutual INformatIon Maximization for Amortized Likelihood Inference from Sampled Trajectories. CoRR abs/2106.01808 (2021) - 2020
- [j17]Giulio Isacchini, Carlos Olivares, Armita Nourmohammad, Aleksandra M. Walczak, Thierry Mora:
SOS: online probability estimation and generation of T-and B-cell receptors. Bioinform. 36(16): 4510-4512 (2020) - [j16]Maximilian Puelma Touzel
, Aleksandra M. Walczak, Thierry Mora
:
Inferring the immune response from repertoire sequencing. PLoS Comput. Biol. 16(4) (2020) - [j15]Zachary Sethna
, Giulio Isacchini
, Thomas Dupic
, Thierry Mora, Aleksandra M. Walczak, Yuval Elhanati
:
Population variability in the generation and selection of T-cell repertoires. PLoS Comput. Biol. 16(12) (2020)
2010 – 2019
- 2019
- [j14]Zachary Sethna, Yuval Elhanati
, Jr Curtis G. Callan, Aleksandra M. Walczak, Thierry Mora:
OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs. Bioinform. 35(17): 2974-2981 (2019) - [j13]Paulina Szymanska-Rozek
, Dario Villamaina, Jacek Miekisz
, Aleksandra M. Walczak:
Dissipation in Non-Steady State Regulatory Circuits. Entropy 21(12): 1212 (2019) - [j12]Thomas Dupic
, Quentin Marcou
, Aleksandra M. Walczak, Thierry Mora
:
Genesis of the αβ T-cell receptor. PLoS Comput. Biol. 15(3) (2019) - [j11]Jacopo Marchi, Ezequiel A. Galpern
, Rocío Espada
, Diego U. Ferreiro
, Aleksandra M. Walczak, Thierry Mora
:
Size and structure of the sequence space of repeat proteins. PLoS Comput. Biol. 15(8) (2019) - 2018
- [j10]Huy Tran
, Jonathan Desponds
, Carmina Perez Romero, Mathieu Coppey
, Cecile Fradin
, Nathalie Dostatni, Aleksandra M. Walczak
:
Precision in a rush: Trade-offs between reproducibility and steepness of the hunchback expression pattern. PLoS Comput. Biol. 14(10) (2018) - [j9]Nicholas A. Rossi, Thierry Mora
, Aleksandra M. Walczak, Mary J. Dunlop
:
Active degradation of MarA controls coordination of its downstream targets. PLoS Comput. Biol. 14(12) (2018) - 2017
- [j8]Charles K. Fisher
, Thierry Mora, Aleksandra M. Walczak:
Variable habitat conditions drive species covariation in the human microbiota. PLoS Comput. Biol. 13(4) (2017) - [j7]Rocío Espada, R. Gonzalo Parra
, Thierry Mora, Aleksandra M. Walczak, Diego U. Ferreiro
:
Inferring repeat-protein energetics from evolutionary information. PLoS Comput. Biol. 13(6) (2017) - [j6]Mikhail V. Pogorelyy
, Yuval Elhanati
, Quentin Marcou
, Anastasiia L. Sycheva, Ekaterina Komech
, Vadim I. Nazarov
, Olga V. Britanova, Dmitry M. Chudakov
, Ilgar Z. Mamedov
, Yuri B. Lebedev
, Thierry Mora
, Aleksandra M. Walczak:
Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires. PLoS Comput. Biol. 13(7) (2017) - 2016
- [j5]Yuval Elhanati
, Quentin Marcou
, Thierry Mora, Aleksandra M. Walczak:
repgenHMM: a dynamic programming tool to infer the rules of immune receptor generation from sequence data. Bioinform. 32(13): 1943-1951 (2016) - [j4]Andrew Mugler, Mark Kittisopikul
, Luke Hayden
, Jintao Liu
, Chris H. Wiggins, Gürol M. Süel, Aleksandra M. Walczak:
Noise Expands the Response Range of the Bacillus subtilis Competence Circuit. PLoS Comput. Biol. 12(3) (2016) - [j3]Jonathan Desponds, Huy Tran
, Teresa Ferraro
, Tanguy Lucas
, Carmina Perez Romero, Aurelien Guillou, Cecile Fradin
, Mathieu Coppey
, Nathalie Dostatni, Aleksandra M. Walczak:
Precision of Readout at the hunchback Gene: Analyzing Short Transcription Time Traces in Living Fly Embryos. PLoS Comput. Biol. 12(12) (2016) - 2015
- [j2]Rocío Espada
, R. Gonzalo Parra
, Thierry Mora, Aleksandra M. Walczak, Diego U. Ferreiro
:
Capturing coevolutionary signals inrepeat proteins. BMC Bioinform. 16: 207:1-207:10 (2015) - 2014
- [i1]Andrea Cavagna, Lorenzo Del Castello, Irene Giardina, Tomas Grigera, Asja Jelic, Stefania Melillo, Thierry Mora, Leonardo Parisi, Edmondo Silvestri, Massimiliano Viale, Aleksandra M. Walczak:
Flocking and turning: a new model for self-organized collective motion. CoRR abs/1403.1202 (2014)
2000 – 2009
- 2008
- [j1]Diego U. Ferreiro
, Aleksandra M. Walczak, Elizabeth A. Komives, Peter G. Wolynes:
The Energy Landscapes of Repeat-Containing Proteins: Topology, Cooperativity, and the Folding Funnels of One-Dimensional Architectures. PLoS Comput. Biol. 4(5) (2008)
Coauthor Index
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