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Anika Oellrich
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2010 – 2019
- 2017
- [j19]Honghan Wu
, Anika Oellrich, Christine Girges, Bernard de Bono, Tim J. P. Hubbard, Richard J. B. Dobson
:
Automated PDF highlighting to support faster curation of literature for Parkinson's and Alzheimer's disease. Database J. Biol. Databases Curation 2017: bax027 (2017) - [c11]Hui Wang, Quan Sun, Anika Oellrich, Honghan Wu, Richard J. B. Dobson:
The psycho-env corpus: research articles annotated for knowledge discovery on correlating mental diseases and environmental factors. KDH@IJCAI 2017: 36-40 - 2016
- [j18]Anika Oellrich, Nigel Collier, Tudor Groza
, Dietrich Rebholz-Schuhmann, Nigam Shah, Olivier Bodenreider, Mary Regina Boland
, Ivo I. Georgiev, Hongfang Liu, Kevin M. Livingston, Augustin Luna, Ann-Marie Mallon
, Prashanti Manda
, Peter N. Robinson, Gabriella Rustici, Michelle Simon, Liqin Wang, Rainer Winnenburg
, Michel Dumontier
:
The digital revolution in phenotyping. Briefings Bioinform. 17(5): 819-830 (2016) - [j17]Anika Oellrich, Terrence F. Meehan
, Helen E. Parkinson
, Sirarat Sarntivijai
, Jacqueline K. White, Natasha A. Karp
:
Reporting phenotypes in mouse models when considering body size as a potential confounder. J. Biomed. Semant. 7: 2 (2016) - [j16]Karin Verspoor
, Anika Oellrich, Nigel Collier, Tudor Groza
, Philippe Rocca-Serra, Larisa N. Soldatova, Michel Dumontier
, Nigam Shah:
Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop. J. Biomed. Semant. 7: 66:1-66:4 (2016) - [c10]James Ravenscroft, Anika Oellrich, Shyamasree Saha, Maria Liakata:
Multi-label Annotation in Scientific Articles - The Multi-label Cancer Risk Assessment Corpus. LREC 2016 - [c9]George Gkotsis, Anika Oellrich, Tim J. P. Hubbard, Richard J. B. Dobson
, Maria Liakata, Sumithra Velupillai, Rina Dutta
:
The language of mental health problems in social media. CLPsych@HLT-NAACL 2016: 63-73 - [c8]George Gkotsis, Sumithra Velupillai, Anika Oellrich, Harry Dean, Maria Liakata, Rina Dutta
:
Don't Let Notes Be Misunderstood: A Negation Detection Method for Assessing Risk of Suicide in Mental Health Records. CLPsych@HLT-NAACL 2016: 95-105 - [c7]Matthias König, Anika Oellrich, Dagmar Waltemath, Richard J. B. Dobson, Tim J. P. Hubbard, Olaf Wolkenhauer:
Challenges and opportunities for system biology standards and tools in medical research. ODLS 2016: 1-6 - 2015
- [j15]Nigel Collier
, Tudor Groza
, Damian Smedley, Peter N. Robinson, Anika Oellrich, Dietrich Rebholz-Schuhmann:
PhenoMiner: from text to a database of phenotypes associated with OMIM diseases. Database J. Biol. Databases Curation 2015 (2015) - [j14]Tudor Groza
, Sebastian Köhler
, Sandra C. Doelken
, Nigel Collier, Anika Oellrich, Damian Smedley, Francisco M. Couto, Gareth Baynam, Andreas Zankl, Peter N. Robinson
:
Automatic concept recognition using the Human Phenotype Ontology reference and test suite corpora. Database J. Biol. Databases Curation 2015 (2015) - [j13]Irene Papatheodorou
, Anika Oellrich, Damian Smedley:
Linking gene expression to phenotypes via pathway information. J. Biomed. Semant. 6: 17 (2015) - [j12]Nigel Collier
, Anika Oellrich, Tudor Groza
:
Concept selection for phenotypes and diseases using learn to rank. J. Biomed. Semant. 6: 24 (2015) - [j11]Larisa N. Soldatova, Nigel Collier
, Anika Oellrich, Tudor Groza
, Karin Verspoor
, Philippe Rocca-Serra, Michel Dumontier
, Nigam H. Shah:
Special issue on bio-ontologies and phenotypes. J. Biomed. Semant. 6: 40 (2015) - 2014
- [j10]Anika Oellrich, Damian Smedley:
Linking tissues to phenotypes using gene expression profiles. Database J. Biol. Databases Curation 2014 (2014) - [j9]Anika Oellrich, Julius O. B. Jacobsen
, Irene Papatheodorou
, Damian Smedley:
Using association rule mining to determine promising secondary phenotyping hypotheses. Bioinform. 30(12): 52-59 (2014) - [j8]Anika Oellrich, Sebastian Köhler
, Nicole L. Washington
, Chris Mungall, Suzanna Lewis
, Melissa A. Haendel
, Peter N. Robinson
, Damian Smedley:
The influence of disease categories on gene candidate predictions from model organism phenotypes. J. Biomed. Semant. 5(S-1): S4 (2014) - 2013
- [j7]Damian Smedley, Anika Oellrich, Sebastian Köhler
, Barbara J. Ruef
, Monte Westerfield, Peter N. Robinson
, Suzanna Lewis
, Christopher J. Mungall
:
PhenoDigm: analyzing curated annotations to associate animal models with human diseases. Database J. Biol. Databases Curation 2013 (2013) - [j6]Anika Oellrich, Christoph Grabmüller, Dietrich Rebholz-Schuhmann:
Automatically transforming pre- to post-composed phenotypes: EQ-lising HPO and MP. J. Biomed. Semant. 4: 29 (2013) - [c6]Tudor Groza, Anika Oellrich, Nigel Collier
:
Using silver and semi-gold standard corpora to compare open named entity recognisers. BIBM 2013: 481-485 - 2012
- [j5]Anika Oellrich, Georgios V. Gkoutos, Robert Hoehndorf, Dietrich Rebholz-Schuhmann:
Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology. J. Biomed. Semant. 3(S-2): S1 (2012) - [c5]Nigel Collier, Mai-Vu Tran, Hoang-Quynh Le, Anika Oellrich, Ai Kawazoe, Martin Hall-May, Dietrich Rebholz-Schuhmann:
A Hybrid Approach to Finding Phenotype Candidates in Genetic Texts. COLING 2012: 647-662 - [c4]Robert Hoehndorf, Anika Oellrich, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos:
Linking PharmGKB to Phenotype Studies and Animal Models of Disease for Drug Repurposing. Pacific Symposium on Biocomputing 2012: 388-399 - 2011
- [j4]Robert Hoehndorf
, Michel Dumontier
, Anika Oellrich, Sarala M. Wimalaratne
, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos
:
A common layer of interoperability for biomedical ontologies based on OWL EL. Bioinform. 27(7): 1001-1008 (2011) - [j3]Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo
, Sampo Pyysalo, Tomoko Ohta, Anika Oellrich, Dietrich Rebholz-Schuhmann:
Ontology design patterns to disambiguate relations between genes and gene products in GENIA. J. Biomed. Semant. 2(S-5): S1 (2011) - [c3]Amanda Clare, Samuel Croset, Christoph Grabmüller, Senay Kafkas, Maria Liakata, Anika Oellrich, Dietrich Rebholz-Schuhmann:
Exploring the Generation and Integration of Publishable Scientific Facts Using the Concept of Nano-publications. SePublica 2011 - 2010
- [j2]Robert Hoehndorf
, Anika Oellrich, Dietrich Rebholz-Schuhmann:
Interoperability between phenotype and anatomy ontologies. Bioinform. 26(24): 3112-3118 (2010) - [j1]Robert Hoehndorf
, Anika Oellrich, Michel Dumontier
, Janet Kelso
, Dietrich Rebholz-Schuhmann, Heinrich Herre:
Relations as patterns: bridging the gap between OBO and OWL. BMC Bioinform. 11: 441 (2010) - [c2]Robert Hoehndorf, Anika Oellrich, Michel Dumontier, Heinrich Herre, Dietrich Rebholz-Schuhmann:
Relational Patterns in OWL and Their Application to OBO. OWLED 2010 - [c1]Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo, Sampo Pyysalo, Tomoko Ohta, Anika Oellrich, Dietrich Rebholz-Schuhmann:
Applying ontology design patterns to the implementation of relations in GENIA. Semantic Mining in Biomedicine 2010
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