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ORCIDRéka Albert
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- affiliation: Penn State, University Park, USA
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2020 – today
- 2023
[j36]Ruihao Li, Jordan C. Rozum, Morgan M. Quail, Mohammad N. Qasim, Suzanne S. Sindi, Clarissa J. Nobile
, Réka Albert, Aaron D. Hernday:
Inferring gene regulatory networks using transcriptional profiles as dynamical attractors. PLoS Comput. Biol. 19(8) (2023)- 2022
- [j35]Jordan C. Rozum, Dávid Deritei, Kyu Hyong Park, Jorge Gómez Tejeda Zañudo, Réka Albert:
pystablemotifs: Python library for attractor identification and control in Boolean networks. Bioinform. 38(5): 1465-1466 (2022) - [j34]Colin Campbell, Laura Russo, Réka Albert, Angus Buckling, Katriona Shea:
Whole community invasions and the integration of novel ecosystems. PLoS Comput. Biol. 18(6) (2022) - 2021
- [j33]David J. Wooten, Réka Albert:
synergy: a Python library for calculating, analyzing and visualizing drug combination synergy. Bioinform. 37(10): 1473-1474 (2021) - [j32]David J. Wooten, Jorge Gómez Tejeda Zañudo, David Murrugarra, Austin M. Perry, Anna Dongari-Bagtzoglou, Reinhard C. Laubenbacher, Clarissa J. Nobile, Réka Albert:
Mathematical modeling of the Candida albicans yeast to hyphal transition reveals novel control strategies. PLoS Comput. Biol. 17(3) (2021) - 2020
- [j31]Parul Maheshwari, Réka Albert:
Network model and analysis of the spread of Covid-19 with social distancing. Appl. Netw. Sci. 5(1): 100 (2020) - [j30]Gang Yan, Alex Arenas, Réka Albert:
Introduction to the Special Section on Network Science in Biological and Bio-Inspired Systems. IEEE Trans. Netw. Sci. Eng. 7(1): 409-410 (2020)
2010 – 2019
- 2019
- [j29]Jordan C. Rozum, Réka Albert:
Controlling the cell Cycle restriction Switch across the Information Gradient. Adv. Complex Syst. 22(7&8): 1950020:1-1950020:21 (2019) - [j28]Parul Maheshwari, Hao Du, Jen Sheen, Sarah M. Assmann, Réka Albert:
Model-driven discovery of calcium-related protein-phosphatase inhibition in plant guard cell signaling. PLoS Comput. Biol. 15(10) (2019) - [j27]David J. Wooten, Sarah M. Groves, Darren R. Tyson, Qi Liu, Jing S. Lim, Réka Albert, Carlos F. Lopez, Julien Sage, Vito Quaranta:
Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers. PLoS Comput. Biol. 15(10) (2019) - [j26]Farzane Yahyanejad, Réka Albert, Bhaskar DasGupta:
A survey of some tensor analysis techniques for biological systems. Quant. Biol. 7(4): 266-277 (2019) - 2018
- [j25]Jordan C. Rozum, Réka Albert:
Identifying (un)controllable dynamical behavior in complex networks. PLoS Comput. Biol. 14(12) (2018) - [j24]Réka Albert, John Baillieul, Adilson E. Motter:
Introduction to the Special Issue on Approaches to Control Biological and Biologically Inspired Networks. IEEE Trans. Control. Netw. Syst. 5(2): 690-693 (2018) - [i9]Réka Albert, John Baillieul, Adilson E. Motter:
Introduction to the Special Issue on Approaches to Control Biological and Biologically Inspired Networks. CoRR abs/1807.00038 (2018) - 2016
- [j23]Xiao Gan, Réka Albert:
Analysis of a dynamic model of guard cell signaling reveals the stability of signal propagation. BMC Syst. Biol. 10: 78 (2016) - [j22]Colin Campbell, Katriona Shea, Suann Yang, Réka Albert:
Motif profile dynamics and transient species in a Boolean model of mutualistic ecological communities. J. Complex Networks 4(1): 127-139 (2016) - [j21]Zhongyao Sun, Réka Albert:
Node-independent elementary signaling modes: A measure of redundancy in Boolean signaling transduction networks. Netw. Sci. 4(3): 273-292 (2016) - [r1]Colin Campbell, Réka Albert:
Quantification of Regulation in Networks with Positive and Negative Interaction Weights. Encyclopedia of Algorithms 2016: 1642-1646 - [i8]Jorge G. T. Zañudo, Gang Yang, Réka Albert:
Structure-based control of complex networks with nonlinear dynamics. CoRR abs/1605.08415 (2016) - 2015
- [j20]Jorge G. T. Zañudo, Réka Albert:
Cell Fate Reprogramming by Control of Intracellular Network Dynamics. PLoS Comput. Biol. 11(4) (2015) - [j19]Steven N. Steinway, Matthew B. Biggs, Thomas P. Loughran Jr., Jason A. Papin, Réka Albert:
Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome. PLoS Comput. Biol. 11(6) (2015) - 2014
- [j18]Colin Campbell, Réka Albert:
Stabilization of perturbed Boolean network attractors through compensatory interactions. BMC Syst. Biol. 8: 53 (2014) - [j17]Zhongyao Sun, Xiaofen Jin, Réka Albert, Sarah M. Assmann:
Multi-level Modeling of Light-Induced Stomatal Opening Offers New Insights into Its Regulation by Drought. PLoS Comput. Biol. 10(11) (2014) - [i7]Réka Albert, Bhaskar DasGupta, Nasim Mobasheri:
Topological implications of negative curvature for biological and social networks. CoRR abs/1403.1228 (2014) - 2013
- [j16]Rui-Sheng Wang, Zhongyao Sun, Réka Albert:
Minimal functional routes in directed graphs with dependent edges. Int. Trans. Oper. Res. 20(3): 391-409 (2013) - [j15]Supreet Reddy Mandala, Soundar R. T. Kumara, Calyampudi Radhakrishna Rao, Réka Albert:
Clustering social networks using ant colony optimization. Oper. Res. 13(1): 47-65 (2013) - [j14]Assieh Saadatpour, Réka Albert, Timothy C. Reluga:
A Reduction Method for Boolean Network Models Proven to Conserve Attractors. SIAM J. Appl. Dyn. Syst. 12(4): 1997-2011 (2013) - [i6]Réka Albert, Bhaskar DasGupta, Nasim Mobasheri:
Some Perspectives on Network Modeling in Therapeutic Target Prediction. CoRR abs/1307.7385 (2013) - 2012
- [j13]Juilee Thakar, Ashutosh K. Pathak, Lisa Murphy, Réka Albert, Isabella M. Cattadori:
Network Model of Immune Responses Reveals Key Effectors to Single and Co-infection Dynamics by a Respiratory Bacterium and a Gastrointestinal Helminth. PLoS Comput. Biol. 8(1) (2012) - [i5]Adilson E. Motter, Réka Albert:
Networks in Motion. CoRR abs/1206.2369 (2012) - 2011
- [j12]Rui-Sheng Wang, Réka Albert:
Elementary signaling modes predict the essentiality of signal transduction network components. BMC Syst. Biol. 5: 44 (2011) - [j11]Assieh Saadatpour, Rui-Sheng Wang, Aijun Liao, Xin Liu, Thomas P. Loughran, István Albert, Réka Albert:
Dynamical and Structural Analysis of a T Cell Survival Network Identifies Novel Candidate Therapeutic Targets for Large Granular Lymphocyte Leukemia. PLoS Comput. Biol. 7(11) (2011) - [i4]Réka Albert, Bhaskar DasGupta, Anthony Gitter, Gamze Gürsoy, Rashmi Hegde, Pradyut Paul, Gowri Sangeetha Sivanathan, Eduardo D. Sontag:
A New Computationally Efficient Measure of Topological Redundancy of Biological and Social Networks. CoRR abs/1108.6113 (2011)
2000 – 2009
- 2008
- [j10]Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Eduardo D. Sontag:
Inferring (Biological) Signal Transduction Networks via Transitive Reductions of Directed Graphs. Algorithmica 51(2): 129-159 (2008) - [j9]Sema Kachalo, Ranran Zhang, Eduardo D. Sontag, Réka Albert, Bhaskar DasGupta:
NET-SYNTHESIS: a software for synthesis, inference and simplification of signal transduction networks. Bioinform. 24(2): 293-295 (2008) - [j8]István Albert, Juilee Thakar, Song Li, Ranran Zhang, Réka Albert:
Boolean network simulations for life scientists. Source Code Biol. Medicine 3 (2008) - 2007
- [j7]Claire Christensen, Réka Albert:
Using Graph Concepts to Understand the Organization of Complex Systems. Int. J. Bifurc. Chaos 17(7): 2201-2214 (2007) - [j6]Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Sema Kachalo, Eduardo D. Sontag, Alexander Zelikovsky, Kelly Westbrooks:
A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence. J. Comput. Biol. 14(7): 927-949 (2007) - [j5]Juilee Thakar, Mylisa Pilione, Girish Kirimanjeswara, Eric T. Harvill, Réka Albert:
Modeling Systems-Level Regulation of Host Immune Responses. PLoS Comput. Biol. 3(6) (2007) - [c2]Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Sema Kachalo, Eduardo D. Sontag, Alexander Zelikovsky, Kelly Westbrooks:
A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence. WABI 2007: 407-419 - 2006
- [j4]Anshuman Gupta, Costas D. Maranas, Réka Albert:
Elucidation of directionality for co-expressed genes: predicting intra-operon termination sites. Bioinform. 22(2): 209-214 (2006) - [j3]Wen-Yu Chung, Réka Albert, István Albert, Anton Nekrutenko, Kateryna D. Makova:
Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network. BMC Bioinform. 7: 46 (2006) - [c1]Madalena Chaves, Eduardo D. Sontag, Réka Albert:
Structure and timescale analysis in genetic regulatory networks. CDC 2006: 2358-2363 - [i3]Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Eduardo D. Sontag:
Inferring (Biological) Signal Transduction Networks via Transitive Reductions of Directed Graphs. Electron. Colloquium Comput. Complex. TR06 (2006) - 2004
- [j2]István Albert, Réka Albert:
Conserved network motifs allow protein-protein interaction prediction. Bioinform. 20(18): 3346-3352 (2004) - [j1]Hari Prasad Thadakamalla, Usha Nandini Raghavan, Soundar R. T. Kumara, Réka Albert:
Survivability of Multiagent-Based Supply Networks: A Topological Perspective. IEEE Intell. Syst. 19(5): 24-31 (2004) - 2001
- [i2]Réka Albert, Albert-László Barabási:
Statistical mechanics of complex networks. CoRR cond-mat/0106096 (2001)
1990 – 1999
- 1999
- [i1]Réka Albert, Hawoong Jeong, Albert-László Barabási:
The diameter of the world wide web. CoRR cond-mat/9907038 (1999)
Coauthor Index
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