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ORCIDJia Meng 0001
Person information
- affiliation: Xi'an Jiaotong-Liverpool University, Department of Biological Sciences, Suzhou, China
- affiliation (former): Massachusetts Institute of Technology, Picower Institute for Learning and Memory, Cambridge, MA, USA
- affiliation (PhD 2011): University of Texas at San Antonio, TX, USA
Other persons with the same name
- Jia Meng 0002 — NICTA, Canberra, Australia (and 1 more)
- Jia Meng 0003 — Beijing Jiaotong University, State Key Laboratoryof Rail Traffic Control and Safety, China
- Jia Meng 0004 — Liaoning Normal University, School of Computer and Information Technology, Dalian, China
- Jia Meng 0005 — Peking University, School of Electronics Engineering and Computer Science, Beijing, China
- Jia Meng 0006 — Tencent YouTu Laboratory, Shanghai, China
- Jia Meng 0007 — Xinxiang University, Ürümqi, China
- Jia Meng 0008 — Zhengzhou University of Light Industry, College of Electrical and Information Engineering, China
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2020 – today
- 2024
[j34]Jie Jiang
, Bowen Song, Jia Meng, Jingxian Zhou:
Tissue-specific RNA methylation prediction from gene expression data using sparse regression models. Comput. Biol. Medicine 169: 107892 (2024)- [c28]Jiahao Zhang, Jia Meng, Yuxin Zhang:
Differentiating amino acids from nanopore sequencing. ICBBT 2024: 25-30 - 2023
- [j33]Yiyou Song, Yue Wang, Xuan Wang, Daiyun Huang, Anh Nguyen, Jia Meng:
Multi-task adaptive pooling enabled synergetic learning of RNA modification across tissue, type and species from low-resolution epitranscriptomes. Briefings Bioinform. 24(3) (2023) - [j32]Bowen Song, Daiyun Huang, Yuxin Zhang, Zhen Wei, Jionglong Su, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng, Kunqi Chen:
m6A-TSHub: Unveiling the Context-specific m6A Methylation and m6A-affecting Mutations in 23 Human Tissues. Genom. Proteom. Bioinform. 21(4): 678-694 (2023) - [j31]Yuxin Zhang, Jie Jiang, Jiongming Ma, Zhen Wei, Yue Wang, Bowen Song, Jia Meng, Guifang Jia, João Pedro de Magalhães, Daniel J. Rigden, Daiyun Hang, Kunqi Chen:
DirectRMDB: a database of post-transcriptional RNA modifications unveiled from direct RNA sequencing technology. Nucleic Acids Res. 51(D1): 106-116 (2023) - [j30]Bowen Song, Xuan Wang, Zhanmin Liang, Jiongming Ma, Daiyun Huang, Yue Wang, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng, Gang Liu, Kunqi Chen, Zhen Wei:
RMDisease V2.0: an updated database of genetic variants that affect RNA modifications with disease and trait implication. Nucleic Acids Res. 51(D1): 1388-1396 (2023) - [c27]Sifan Song, Jinfeng Wang, Fengrui Cheng, Qirui Cao, Yihan Zuo, Yongteng Lei, Ruomai Yang, Chunxiao Yang, Frans Coenen, Jia Meng, Kang Dang, Jionglong Su:
A Robust Framework of Chromosome Straightening With Vit-Patch Gan. ISBI 2023: 1-5 - 2022
- [j29]Jiongming Ma, Bowen Song, Zhen Wei, Daiyun Huang, Yuxin Zhang, Jionglong Su, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng, Kunqi Chen:
m5C-Atlas: a comprehensive database for decoding and annotating the 5-methylcytosine (m5C) epitranscriptome. Nucleic Acids Res. 50(D1): 196-203 (2022) - [j28]Sifan Song, Tianming Bai, Yanxin Zhao, Wenbo Zhang, Chunxiao Yang, Jia Meng, Fei Ma, Jionglong Su:
A New Convolutional Neural Network Architecture for Automatic Segmentation of Overlapping Human Chromosomes. Neural Process. Lett. 54(1): 285-301 (2022) - [j27]Shutao Chen, Lin Zhang, Lin Lu, Jia Meng, Hui Liu:
FBCwPlaid: A Functional Biclustering Analysis of Epi-Transcriptome Profiling Data Via a Weighted Plaid Model. IEEE ACM Trans. Comput. Biol. Bioinform. 19(3): 1640-1650 (2022) - [c26]Jinfeng Wang, Qiming Huang, Feilong Tang, Jia Meng, Jionglong Su, Sifan Song:
Stepwise Feature Fusion: Local Guides Global. MICCAI (3) 2022: 110-120 - [i3]Sifan Song, Jinfeng Wang, Fengrui Cheng, Qirui Cao, Yihan Zuo, Yongteng Lei, Ruomai Yang, Chunxiao Yang, Frans Coenen, Jia Meng, Kang Dang, Jionglong Su:
A Robust Framework of Chromosome Straightening with ViT-Patch GAN. CoRR abs/2203.02901 (2022) - [i2]Jinfeng Wang, Qiming Huang, Feilong Tang, Jia Meng, Jionglong Su, Sifan Song:
Stepwise Feature Fusion: Local Guides Global. CoRR abs/2203.03635 (2022) - 2021
- [j26]Bowen Song, Kunqi Chen, Yujiao Tang, Zhen Wei, Jionglong Su, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng:
ConsRM: collection and large-scale prediction of the evolutionarily conserved RNA methylation sites, with implications for the functional epitranscriptome. Briefings Bioinform. 22(6) (2021) - [j25]Yue Wang, Kunqi Chen, Zhen Wei, Frans Coenen, Jionglong Su, Jia Meng:
MetaTX: deciphering the distribution of mRNA-related features in the presence of isoform ambiguity, with applications in epitranscriptome analysis. Bioinform. 37(9): 1285-1291 (2021) - [j24]Song-Yao Zhang, Shaowu Zhang, Yujiao Tang, Xiaonan Fan, Jia Meng:
Funm6AViewer: a web server and R package for functional analysis of context-specific m6A RNA methylation. Bioinform. 37(22): 4277-4279 (2021) - [j23]Daiyun Huang, Bowen Song, Jingjue Wei, Jionglong Su, Frans Coenen, Jia Meng:
Weakly supervised learning of RNA modifications from low-resolution epitranscriptome data. Bioinform. 37(Supplement): 222-230 (2021) - [j22]Yujiao Tang, Kunqi Chen, Bowen Song, Jiongming Ma, Xiangyu Wu, Qingru Xu, Zhen Wei, Jionglong Su, Gang Liu, Rong Rong, Zhiliang Lu, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng:
m6A-Atlas: a comprehensive knowledgebase for unraveling the N6-methyladenosine (m6A) epitranscriptome. Nucleic Acids Res. 49(Database-Issue): D134-D143 (2021) - [j21]Kunqi Chen, Bowen Song, Yujiao Tang, Zhen Wei, Qingru Xu, Jionglong Su, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng:
RMDisease: a database of genetic variants that affect RNA modifications, with implications for epitranscriptome pathogenesis. Nucleic Acids Res. 49(Database-Issue): D1396-D1404 (2021) - [c25]Qingru Xu, Xiangyu Wu, Jia Meng:
Computational Prediction of N6-methyladenosine (m6A) RNA Methylation in SARS-CoV-2 Viral Transcripts. BIBE 2021: 11:1-11:4 - [c24]Yuxuan Wu, Yuxin Zhang, Ruoqi Wang, Jia Meng, Kunqi Chen, Yiyou Song, Daiyun Huang:
Prediction of m6A Reader Substrate Sites Using Deep Convolutional and Recurrent Neural Network. BIBE 2021: 28:1-28:4 - [c23]Yuxin Zhang, Yuxuan Wu, Di Zhen, Kunqi Chen, Jia Meng:
A Meta-analysis: Evaluating the Effect of METTL3/METTL14 on m6A Level Based on Knockdown Samples. BIBE 2021: 37:1-37:4 - [c22]Sifan Song, Daiyun Huang, Yalun Hu, Chunxiao Yang, Jia Meng, Fei Ma, Frans Coenen, Jiaming Zhang, Jionglong Su:
A Novel Application of Image-to-Image Translation: Chromosome Straightening Framework by Learning from a Single Image. CISP-BMEI 2021: 1-9 - [i1]Sifan Song, Daiyun Huang, Yalun Hu, Chunxiao Yang, Jia Meng, Fei Ma, Jiaming Zhang, Jionglong Su:
A Novel Application of Image-to-Image Translation: Chromosome Straightening Framework by Learning from a Single Image. CoRR abs/2103.02835 (2021) - 2020
- [j20]Lian Liu, Xiujuan Lei, Jia Meng, Zhen Wei:
ISGm1A: Integration of Sequence Features and Genomic Features to Improve the Prediction of Human m1A RNA Methylation Sites. IEEE Access 8: 81971-81977 (2020) - [j19]Bowen Song, Yujiao Tang, Kunqi Chen, Zhen Wei, Rong Rong, Zhiliang Lu, Jionglong Su, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng:
m7GHub: deciphering the location, regulation and pathogenesis of internal mRNA N7-methylguanosine (m7G) sites in human. Bioinform. 36(11): 3528-3536 (2020) - [j18]Lin Zhang, Shutao Chen, Jingyi Zhu, Jia Meng, Hui Liu:
REW-ISA: unveiling local functional blocks in epi-transcriptome profiling data via an RNA expression-weighted iterative signature algorithm. BMC Bioinform. 21(1): 447 (2020) - [c21]Jinge Wu, Lihan Zhang, Yuanzhe Wang, Jia Meng, Jionglong Su, Yue Wang:
An Improved Algorithm for Estimating the Distribution of RNA-related Genomic Features. BIBE 2020: 3:1-3:5 - [c20]Daoyuan Chen, Qinyi Liu, Jia Meng, Jionglong Su:
Gibbs Sampling Based Banoian Biclustering of Gene Expression Data. CISP-BMEI 2020: 790-795
2010 – 2019
- 2019
- [j17]Xing Chen, Ya-Zhou Sun, Hui Liu, Lin Zhang, Jian-Qiang Li, Jia Meng:
RNA methylation and diseases: experimental results, databases, Web servers and computational models. Briefings Bioinform. 20(3): 896-917 (2019) - [j16]Song-Yao Zhang, Shao-Wu Zhang, Xiao-Nan Fan, Teng Zhang, Jia Meng, Yufei Huang:
FunDMDeep-m6A: identification and prioritization of functional differential m6A methylation genes. Bioinform. 35(14): i90-i98 (2019) - [j15]Xiangyu Wu, Zhen Wei, Kunqi Chen, Qing Zhang, Jionglong Su, Hui Liu, Lin Zhang, Jia Meng:
m6Acomet: large-scale functional prediction of individual m6A RNA methylation sites from an RNA co-methylation network. BMC Bioinform. 20(1): 223:1-223:12 (2019) - [j14]Song-Yao Zhang, Shaowu Zhang, Xiaonan Fan, Jia Meng, Yidong Chen, Shou-Jiang Gao, Yufei Huang:
Global analysis of N6-methyladenosine functions and its disease association using deep learning and network-based methods. PLoS Comput. Biol. 15(1) (2019) - [c19]Shen Jia, Haochen Luo, Qiheng Gao, Jiaqi Guo, Jionglong Su, Jia Meng, Xiangyu Wu:
Detection of m6A RNA Methylation in Nanopore Sequencing Data Using Support Vector Machine. CISP-BMEI 2019: 1-5 - 2018
- [j13]Teng Zhang, Shao-Wu Zhang, Lin Zhang, Jia Meng:
trumpet: transcriptome-guided quality assessment of m6A-seq data. BMC Bioinform. 19(1): 260:1-260:11 (2018) - [j12]Hui Liu, Huaizhi Wang, Zhen Wei, Songyao Zhang, Gang Hua, Shao-Wu Zhang, Lin Zhang, Shou-Jiang Gao, Jia Meng, Xing Chen, Yufei Huang:
MeT-DB V2.0: elucidating context-specific functions of N6-methyl-adenosine methyltranscriptome. Nucleic Acids Res. 46(Database-Issue): D281-D287 (2018) - [j11]Xiaodong Cui, Lin Zhang, Jia Meng, Manjeet K. Rao, Yidong Chen, Yufei Huang:
MeTDiff: A Novel Differential RNA Methylation Analysis for MeRIP-Seq Data. IEEE ACM Trans. Comput. Biol. Bioinform. 15(2): 526-534 (2018) - [c18]Songyao Zhang, Shaowu Zhang, Xiaonan Fan, Jia Meng, Yidong Chen, Yufei Huang:
A Machine Learning Approach for Uncovering N6-methyladenosine-Disease Association. BCB 2018: 600 - 2017
- [j10]Lian Liu, Shao-Wu Zhang, Yufei Huang, Jia Meng:
QNB: differential RNA methylation analysis for count-based small-sample sequencing data with a quad-negative binomial model. BMC Bioinform. 18(1): 387:1-387:12 (2017) - [j9]Lin Zhang, Hui Liu, Yufei Huang, Xuesong Wang, Yidong Chen, Jia Meng:
Cancer Progression Prediction Using Gene Interaction Regularized Elastic Net. IEEE ACM Trans. Comput. Biol. Bioinform. 14(1): 145-154 (2017) - 2016
- [j8]Xiaodong Cui, Jia Meng, Shaowu Zhang, Yidong Chen, Yufei Huang:
A novel algorithm for calling mRNA m6A peaks by modeling biological variances in MeRIP-seq data. Bioinform. 32(12): 378-385 (2016) - [j7]Song-Yao Zhang, Shao-Wu Zhang, Lian Liu, Jia Meng, Yufei Huang:
m6A-Driver: Identifying Context-Specific mRNA m6A Methylation-Driven Gene Interaction Networks. PLoS Comput. Biol. 12(12) (2016) - 2015
- [j6]Hui Liu, Mario A. Flores, Jia Meng, Lin Zhang, Xinyu Zhao, Manjeet K. Rao, Yidong Chen, Yufei Huang:
MeT-DB: a database of transcriptome methylation in mammalian cells. Nucleic Acids Res. 43(Database-Issue): 197-203 (2015) - [c17]Xiaodong Cui, Zhen Wei, Lin Zhang, Hui Liu, Lei Sun, Shaowu Zhang, Yufei Huang, Jia Meng:
Sketching the distribution of transcriptomic features on RNA transcripts with Travis coordinates. BIBM 2015: 1536-1542 - [c16]Xiaodong Cui, Jia Meng, Shaowu Zhang, Yufei Huang:
Modeling of replicates variances for detecting RNA methylation site in MERIP-SEQ data. ChinaSIP 2015: 802-806 - 2014
- [j5]Jia Meng, Lenis Mauricio Merino, Kay Robbins, Yufei Huang:
Classification of Imperfectly Time-Locked Image RSVP Events with EEG Device. Neuroinformatics 12(2): 261-275 (2014) - [c15]Lin Zhang, Jia Meng, Hui Liu, Xiaodong Cui, Shao-Wu Zhang, Yidong Chen, Yufei Huang:
Detecting differentially methylated mRNA from MeRIP-Seq with likelihood ratio test. GlobalSIP 2014: 1368-1371 - [c14]Yu-Chen Zhang, Shao-Wu Zhang, Lian Liu, Lin Zhang, Hui Liu, Xiaodong Cui, Yufei Huang, Jia Meng:
Differential analysis of RNA methylome with improved spatial resolution. GlobalSIP 2014: 1372-1375 - 2013
- [j4]Jia Meng, Xiaodong Cui, Manjeet K. Rao, Yidong Chen, Yufei Huang:
Exome-based analysis for RNA epigenome sequencing data. Bioinform. 29(12): 1565-1567 (2013) - [c13]Jia Meng, Xiaodong Cui, Hui Liu, Lin Zhang, Shaowu Zhang, Manjeet K. Rao, Yidong Chen, Yufei Huang:
Unveiling the dynamics in RNA epigenetic regulations. BIBM 2013: 139-144 - [c12]Lin Zhang, Hui Liu, Jia Meng, Xuesong Wang, Yidong Chen, Yufei Huang:
Integration of gene expression, genome wide DNA methylation, and gene networks for clinical outcome prediction in ovarian cancer. BIBM 2013: 535-538 - [c11]Xiaodong Cui, Jia Meng, Manjeet K. Rao, Yidong Chen, Yufei Huang:
An HMM-based Exome Peak-finding package for RNA epigenome sequencing data. GENSiPS 2013: 85 - [c10]Shaheen Ahmed, Lenis Mauricio Merino, Zijing Mao, Jia Meng, Kay Robbins, Yufei Huang:
A Deep Learning method for classification of images RSVP events with EEG data. GlobalSIP 2013: 33-36 - [c9]Xiaodong Cui, Jia Meng, Manjeet K. Rao, Yidong Chen, Yufei Huang:
Differential analysis of rna methylation sequencing data. GlobalSIP 2013: 41-42 - [c8]Lenis Mauricio Merino, Jia Meng, Stephen M. Gordon, Brent J. Lance, Tony Johnson, Victor Paul, Kay Robbins, Jean M. Vettel, Yufei Huang:
A bag-of-words model for task-load prediction from EEG in complex environments. ICASSP 2013: 1227-1231 - 2012
- [j3]Dong Yue, Jia Meng, Mingzhu Lu, C. L. Philip Chen, Maozu Guo, Yufei Huang:
Understanding MicroRNA Regulation: A computational perspective. IEEE Signal Process. Mag. 29(1): 77-88 (2012) - [c7]Jia Meng, Lenis Mauricio Merino, Kay Robbins, Yufei Huang:
Classification of EEG recordings without perfectly time-locked events. SSP 2012: 444-447 - [c6]Jia Meng, Lenis Mauricio Merino, Kay Robbins, Yufei Huang:
Exploiting correlated discriminant features in time frequency and space for characterization and robust classification of image RSVP events with EEG data. SSP 2012: 668-671 - [c5]Manuel Sanchez-Castillo, Jia Meng, Isabel M. Tienda-Luna, Yufei Huang:
Basis-expansion factor models for uncovering transcription factor regulatory network. SSP 2012: 700-703 - 2011
- [c4]Lin Zhang, Jia Meng, Hui Liu, Yufei Huang:
Clustering DNA methylation expressions using nonparametric beta mixture model. GENSiPS 2011: 170-173 - [c3]Jia Meng, Hung-I Chen, Jianqiu Zhang, Yidong Chen, Yufei Huang:
Uncover cooperative gene regulations by microRNAs and transcription factors in glioblastoma using a nonnegative hybrid factor model. ICASSP 2011: 6012-6015 - 2010
- [j2]Jia Meng, Jianqiu (Michelle) Zhang, Yuan (Alan) Qi, Yidong Chen, Yufei Huang:
Uncovering Transcriptional Regulatory Networks by Sparse Bayesian Factor Model. EURASIP J. Adv. Signal Process. 2010 (2010) - [c2]Jia Meng, Jianqiu Zhang, Yidong Chen, Yufei Huang:
An Iterated Conditional Modes solution for sparse Bayesian factor modeling of transcriptional regulatory networks. BIBM 2010: 335-340 - [c1]Jia Meng, Jianqiu Zhang, Yidong Chen, Yufei Huang:
An iterated conditional mode solution for Bayesian factor modeling of transcriptional regulatory networks. GENSiPS 2010: 1-4
2000 – 2009
- 2009
- [j1]Jia Meng, Shou-Jiang Gao, Yufei Huang:
Enrichment constrained time-dependent clustering analysis for finding meaningful temporal transcription modules. Bioinform. 25(12): 1521-1527 (2009)
Coauthor Index
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