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Patrice Koehl
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2020 – today
- 2024
- [j30]Patrice Koehl
, Henri Orland
:
A General Statistical Physics Framework for Assignment Problems. Algorithms 17(5): 212 (2024) - 2023
- [j29]Patrice Koehl
, Marc Delarue
, Henri Orland
:
Computing the Gromov-Wasserstein Distance between Two Surface Meshes Using Optimal Transport. Algorithms 16(3): 131 (2023) - [j28]Patrice Koehl
, Henri Orland
:
A Physicist's View on Partial 3D Shape Matching. Algorithms 16(7): 346 (2023) - [j27]Patrice Koehl
, Arseniy V. Akopyan, Herbert Edelsbrunner:
Computing the Volume, Surface Area, Mean, and Gaussian Curvatures of Molecules and Their Derivatives. J. Chem. Inf. Model. 63(3): 973-985 (2023) - 2022
- [j26]Jérôme Houdayer
, Patrice Koehl
:
Stable Evaluation of 3D Zernike Moments for Surface Meshes. Algorithms 15(11): 406 (2022) - 2021
- [j25]Patrice Koehl
, Henri Orland, Marc Delarue:
Parameterizing elastic network models to capture the dynamics of proteins. J. Comput. Chem. 42(23): 1643-1661 (2021)
2010 – 2019
- 2018
- [j24]Timothy E. Saunders
, Cynthia Y. He, Patrice Koehl, Lee-Ling Sharon Ong
, Peter T. C. So:
Eleven quick tips for running an interdisciplinary short course for new graduate students. PLoS Comput. Biol. 14(3) (2018) - 2017
- [j23]Saghi Nojoomi, Patrice Koehl
:
String kernels for protein sequence comparisons: improved fold recognition. BMC Bioinform. 18(1): 137:1-137:15 (2017) - [j22]Saghi Nojoomi, Patrice Koehl
:
A weighted string kernel for protein fold recognition. BMC Bioinform. 18(1): 378 (2017) - [j21]Joel Hass, Patrice Koehl:
Comparing shapes of genus-zero surfaces. J. Appl. Comput. Topol. 1(1): 57-87 (2017) - 2014
- [j20]Fei Xia, Dudu Tong, Lifeng Yang, Dayong Wang, Steven C. H. Hoi
, Patrice Koehl, Lanyuan Lu:
Identifying essential pairwise interactions in elastic network model using the alpha shape theory. J. Comput. Chem. 35(15): 1111-1121 (2014) - [j19]Patrice Koehl, Joel Hass:
Automatic Alignment of Genus-Zero Surfaces. IEEE Trans. Pattern Anal. Mach. Intell. 36(3): 466-478 (2014) - 2013
- [j18]Paul Mach, Patrice Koehl
:
An analytical method for computing atomic contact areas in biomolecules. J. Comput. Chem. 34(2): 105-120 (2013) - [c3]Alex Tsui, Devin Fenton
, Phong Vuong, Joel Hass, Patrice Koehl
, Nina Amenta, David Coeurjolly
, Charles DeCarli, Owen T. Carmichael:
Globally Optimal Cortical Surface Matching with Exact Landmark Correspondence. IPMI 2013: 487-498 - 2012
- [j17]Eric di Luccio
, Patrice Koehl:
The H-factor as a novel quality metric for homology modeling. J. Clin. Bioinform. 2: 18 (2012) - [j16]Patrice Koehl
:
Fast Recursive Computation of 3D Geometric Moments from Surface Meshes. IEEE Trans. Pattern Anal. Mach. Intell. 34(11): 2158-2163 (2012) - 2011
- [j15]Eric di Luccio
, Patrice Koehl
:
A quality metric for homology modeling: the H-factor. BMC Bioinform. 12: 48 (2011) - [j14]Xinwei Shi, Patrice Koehl
:
Adaptive skin meshes coarsening for biomolecular simulation. Comput. Aided Geom. Des. 28(5): 307-320 (2011) - [j13]Paul Mach, Patrice Koehl
:
Geometric measures of large biomolecules: Surface, volume, and pockets. J. Comput. Chem. 32(14): 3023-3038 (2011) - [j12]Frédéric Poitevin
, Henri Orland
, Sebastian Doniach, Patrice Koehl
, Marc Delarue:
AquaSAXS: a web server for computation and fitting of SAXS profiles with non-uniformally hydrated atomic models. Nucleic Acids Res. 39(Web-Server-Issue): 184-189 (2011) - 2010
- [j11]Patricia Francis-Lyon, Shengyin Gu, Joel Hass, Nina Amenta, Patrice Koehl
:
Sampling the conformation of protein surface residues for flexible protein docking. BMC Bioinform. 11: 575 (2010)
2000 – 2009
- 2009
- [c2]Xinwei Shi, Patrice Koehl:
Adaptive surface meshes coarsening with guaranteed quality and topology. CGI 2009: 53-61 - 2008
- [p1]Vijay Natarajan, Patrice Koehl, Yusu Wang, Bernd Hamann:
Visual Analysis of Biomolecular Surfaces. Visualization in Medicine and Life Sciences 2008: 237-255 - 2007
- [j10]Joel Franklin, Patrice Koehl
, Sebastian Doniach, Marc Delarue:
MinActionPath: maximum likelihood trajectory for large-scale structural transitions in a coarse-grained locally harmonic energy landscape. Nucleic Acids Res. 35(Web-Server-Issue): 477-482 (2007) - [c1]Shengyin Gu, Olivier Poch, Bernd Hamann, Patrice Koehl:
A Geometric Representation of Protein Sequences. BIBM 2007: 135-142 - 2006
- [j9]Afra Zomorodian, Leonidas J. Guibas, Patrice Koehl
:
Geometric filtering of pairwise atomic interactions applied to the design of efficient statistical potentials. Comput. Aided Geom. Des. 23(6): 531-544 (2006) - [j8]Cyril Azuara, Erik Lindahl
, Patrice Koehl
, Henri Orland
, Marc Delarue:
PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics. Nucleic Acids Res. 34(Web-Server-Issue): 38-42 (2006) - [j7]Erik Lindahl
, Cyril Azuara, Patrice Koehl
, Marc Delarue:
NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis. Nucleic Acids Res. 34(Web-Server-Issue): 52-56 (2006) - 2005
- [j6]Rachel Kolodny, Leonidas J. Guibas, Michael Levitt, Patrice Koehl
:
Inverse Kinematics in Biology: The Protein Loop Closure Problem. Int. J. Robotics Res. 24(2-3): 151-163 (2005) - 2004
- [j5]Robert L. Bryant
, Herbert Edelsbrunner, Patrice Koehl
, Michael Levitt:
The Area Derivative of a Space-Filling Diagram. Discret. Comput. Geom. 32(3): 293-308 (2004) - [j4]John-Marc Chandonia
, Gary Chung Hon, Nigel S. Walker, Loredana Lo Conte, Patrice Koehl
, Michael Levitt, Steven E. Brenner:
The ASTRAL Compendium in 2004. Nucleic Acids Res. 32(Database-Issue): 189-192 (2004) - 2002
- [j3]Pankaj K. Agarwal, Leonidas J. Guibas, Herbert Edelsbrunner, Jeff Erickson, Michael Isard, Sariel Har-Peled
, John Hershberger, Christian S. Jensen
, Lydia E. Kavraki
, Patrice Koehl
, Ming C. Lin, Dinesh Manocha
, Dimitris N. Metaxas, Brian Mirtich, David M. Mount
, S. Muthukrishnan, Dinesh K. Pai, Elisha Sacks, Jack Snoeyink
, Subhash Suri, Ouri Wolfson
:
Algorithmic issues in modeling motion. ACM Comput. Surv. 34(4): 550-572 (2002) - [j2]John-Marc Chandonia
, Nigel S. Walker, Loredana Lo Conte, Patrice Koehl
, Michael Levitt, Steven E. Brenner:
ASTRAL compendium enhancements. Nucleic Acids Res. 30(1): 260-263 (2002) - 2000
- [j1]Steven E. Brenner, Patrice Koehl
, Michael Levitt:
The ASTRAL compendium for protein structure and sequence analysis. Nucleic Acids Res. 28(1): 254-256 (2000)
Coauthor Index
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last updated on 2024-07-05 20:09 CEST by the dblp team
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