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ORCIDAchim Tresch
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2020 – today
- 2024
[j21]Jason M. Müller, Katharina Moos, Till Baar
, Kerstin C. Maier, Kristina Zumer, Achim Tresch:
Nuclear export is a limiting factor in eukaryotic mRNA metabolism. PLoS Comput. Biol. 20(5): 1012059 (2024)
2010 – 2019
- 2019
- [j20]Henrik Failmezger, Ezgi Dursun, Sebastian Dümcke, Max Endele, Don Poron, Timm Schroeder, Anne Krug, Achim Tresch:
Clustering of samples with a tree-shaped dependence structure, with an application to microscopic time lapse imaging. Bioinform. 35(13): 2291-2299 (2019) - 2017
- [j19]Georg Stricker, Alexander Engelhardt, Daniel Schulz, Matthias Schmid, Achim Tresch, Julien Gagneur:
GenoGAM: genome-wide generalized additive models for ChIP-Seq analysis. Bioinform. 33(15): 2258-2265 (2017) - 2015
- [j18]Theresa Niederberger, Henrik Failmezger, Diana Uskat, Don Poron, Ingmar Glauche, Nico Scherf, Ingo Roeder, Timm Schroeder, Achim Tresch:
Factor graph analysis of live cell-imaging data reveals mechanisms of cell fate decisions. Bioinform. 31(11): 1816-1823 (2015) - 2014
- [j17]Sebastian Dümcke, Johannes Bräuer, Benedict Anchang, Rainer Spang, Niko Beerenwinkel, Achim Tresch:
Exact likelihood computation in Boolean networks with probabilistic time delays, and its application in signal network reconstruction. Bioinform. 30(3): 414-419 (2014) - [j16]Kemal Akman, Thomas Haaf, Silvia Gravina, Jan Vijg, Achim Tresch:
Genome-wide quantitative analysis of DNA methylation from bisulfite sequencing data. Bioinform. 30(13): 1933-1934 (2014) - 2013
- [j15]Henrik Failmezger, Paurush Praveen, Achim Tresch, Holger Fröhlich:
Learning gene network structure from time laps cell imaging in RNAi Knock downs. Bioinform. 29(12): 1534-1540 (2013) - [j14]Henrik Failmezger, Holger Fröhlich, Achim Tresch:
Unsupervised automated high throughput phenotyping of RNAi time-lapse movies. BMC Bioinform. 14: 292 (2013) - [j13]Henrik Failmezger, Benjamin Jaegle, Andrea Schrader, Martin Hülskamp, Achim Tresch:
Semi-automated 3D Leaf Reconstruction and Analysis of Trichome Patterning from Light Microscopic Images. PLoS Comput. Biol. 9(4) (2013) - 2012
- [j12]Björn Schwalb, Daniel Schulz, Mai Sun, Benedikt Zacher, Sebastian Dümcke, Dietmar E. Martin, Patrick Cramer, Achim Tresch:
Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA). Bioinform. 28(6): 884-885 (2012) - [j11]Benedikt Zacher, Khalid Abnaof, Stephan Gade, Erfan Younesi, Achim Tresch, Holger Fröhlich:
Joint Bayesian inference of condition-specific miRNA and transcription factor activities from combined gene and microRNA expression data. Bioinform. 28(13): 1714-1720 (2012) - [j10]Theresa Niederberger, Stefanie Etzold, Michael Lidschreiber, Kerstin C. Maier, Dietmar E. Martin, Holger Fröhlich, Patrick Cramer, Achim Tresch:
MC EMiNEM Maps the Interaction Landscape of the Mediator. PLoS Comput. Biol. 8(6) (2012) - [i2]Ramin Norousi, Stephan Wickles, Christoph Leidig, Thomas Becker, Volker J. Schmid, Roland Beckmann, Achim Tresch:
Automatic post-picking using MAPPOS improves particle image detection from Cryo-EM micrographs. CoRR abs/1212.4871 (2012) - 2011
- [j9]Holger Fröhlich, Paurush Praveen, Achim Tresch:
Fast and efficient dynamic nested effects models. Bioinform. 27(2): 238-244 (2011) - [j8]Julien Gagneur, Markus C. Elze, Achim Tresch:
Selective Phenotyping, Entropy Reduction and the Mastermind Game. BMC Bioinform. 12: 406 (2011) - [i1]Ramin Norousi, Stephan Wickles, Thomas Becker, Roland Beckmann, Volker J. Schmid, Achim Tresch:
Automatic post-picking improves particle image detection from Cryo-EM micrographs. CoRR abs/1112.3173 (2011) - 2010
- [j7]Anika Jöcker, Johanna Sonntag, Frauke Henjes, Frank Götschel, Achim Tresch, Tim Beißbarth, Stefan Wiemann, Ulrike Korf:
QuantProReloaded: quantitative analysis of microspot immunoassays. Bioinform. 26(19): 2480-2481 (2010) - [j6]Benedikt Zacher, Pei Fen Kuan, Achim Tresch:
Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data. BMC Bioinform. 11: 194 (2010)
2000 – 2009
- 2009
- [j5]Andreas Buness, Markus Ruschhaupt, Ruprecht Kuner, Achim Tresch:
Classification across gene expression microarray studies. BMC Bioinform. 10: 453 (2009) - [j4]Cordula Zeller, Holger Fröhlich, Achim Tresch:
A Bayesian Network View on Nested Effects Models. EURASIP J. Bioinform. Syst. Biol. 2009 (2009) - 2008
- [j3]Holger Fröhlich, Tim Beißbarth, Achim Tresch, Dennis Kostka, Juby Jacob, Rainer Spang, Florian Markowetz:
Analyzing gene perturbation screens with nested effects models in R and bioconductor. Bioinform. 24(21): 2549-2550 (2008) - 2007
- [j2]Andreas Buness, Ruprecht Kuner, Markus Ruschhaupt, Annemarie Poustka, Holger Sültmann, Achim Tresch:
Identification of aberrant chromosomal regions from gene expression microarray studies applied to human breast cancer. Bioinform. 23(17): 2273-2280 (2007) - [j1]Achim Tresch, Tim Beißbarth, Holger Sültmann, Ruprecht Kuner, Annemarie Poustka, Andreas Buness:
Discrimination of Direct and Indirect Interactions in a Network of Regulatory Effects. J. Comput. Biol. 14(9): 1217-1228 (2007)
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