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2010 – 2019
- 2019
[j13]Tony E. Lewis, Ian Sillitoe, Jonathan G. Lees:
cath-resolve-hits: a new tool that resolves domain matches suspiciously quickly. Bioinform. 35(10): 1766-1767 (2019)- [j12]Ian Sillitoe, Natalie L. Dawson
, Tony E. Lewis, Sayoni Das, Jonathan G. Lees, Paul Ashford, Adeyelu Tolulope, Harry M. Scholes, Ilya Senatorov, Andra Bujan, Fatima Ceballos Rodriguez-Conde, Benjamin Dowling, Janet M. Thornton, Christine A. Orengo:
CATH: expanding the horizons of structure-based functional annotations for genome sequences. Nucleic Acids Res. 47(Database-Issue): D280-D284 (2019) - 2018
- [j11]Tony E. Lewis, Ian Sillitoe, Natalie L. Dawson, Su Datt Lam, Tristan Clarke, David A. Lee, Christine A. Orengo, Jonathan G. Lees:
Gene3D: Extensive prediction of globular domains in proteins. Nucleic Acids Res. 46(Database-Issue): D1282 (2018) - [j10]Tony E. Lewis, Ian Sillitoe, Natalie L. Dawson, Su Datt Lam, Tristan Clarke, David A. Lee, Christine A. Orengo, Jonathan G. Lees:
Gene3D: Extensive prediction of globular domains in proteins. Nucleic Acids Res. 46(Database-Issue): D435-D439 (2018) - 2017
- [j9]Natalie L. Dawson, Tony E. Lewis, Sayoni Das, Jonathan G. Lees, David A. Lee, Paul Ashford, Christine A. Orengo, Ian Sillitoe:
CATH: an expanded resource to predict protein function through structure and sequence. Nucleic Acids Res. 45(Database-Issue): D289-D295 (2017) - 2015
- [j8]Ian Sillitoe, Tony E. Lewis, Alison L. Cuff, Sayoni Das, Paul Ashford, Natalie L. Dawson, Nicholas Furnham, Roman A. Laskowski, David A. Lee, Jonathan G. Lees, Sonja Lehtinen, Romain A. Studer, Janet M. Thornton, Christine A. Orengo:
CATH: comprehensive structural and functional annotations for genome sequences. Nucleic Acids Res. 43(Database-Issue): 376-381 (2015) - [j7]Tony E. Lewis, Ian Sillitoe, Antonina Andreeva, Tom L. Blundell, Daniel W. A. Buchan, Cyrus Chothia, Domenico Cozzetto, Jose M. Dana, Ioannis Filippis, Julian Gough, David T. Jones, Lawrence A. Kelley, Gerard J. Kleywegt, Federico Minneci, Jaina Mistry, Alexey G. Murzin, Bernardo Ochoa-Montaño, Matt E. Oates, Marco Punta, Owen J. L. Rackham, Jonathan Stahlhacke, Michael J. E. Sternberg, Sameer Velankar, Christine A. Orengo:
Genome3D: exploiting structure to help users understand their sequences. Nucleic Acids Res. 43(Database-Issue): 382-386 (2015) - 2013
- [j6]Ian Sillitoe, Alison L. Cuff, Benoit H. Dessailly, Natalie L. Dawson, Nicholas Furnham, David A. Lee, Jonathan G. Lees, Tony E. Lewis, Romain A. Studer, Robert Rentzsch, Corin Yeats, Janet M. Thornton, Christine A. Orengo:
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures. Nucleic Acids Res. 41(Database-Issue): 490-498 (2013) - [j5]Tony E. Lewis, Ian Sillitoe, Antonina Andreeva, Tom L. Blundell, Daniel W. A. Buchan, Cyrus Chothia, Alison L. Cuff, Jose M. Dana, Ioannis Filippis, Julian Gough, Sarah Hunter, David T. Jones, Lawrence A. Kelley, Gerard J. Kleywegt, Federico Minneci, Alex L. Mitchell, Alexey G. Murzin, Bernardo Ochoa-Montaño, Owen J. L. Rackham, James Smith, Michael J. E. Sternberg, Sameer Velankar, Corin Yeats, Christine A. Orengo:
Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains. Nucleic Acids Res. 41(Database-Issue): 499-507 (2013) - 2011
- [j4]Alison L. Cuff, Ian Sillitoe, Tony E. Lewis, Andrew B. Clegg, Robert Rentzsch, Nicholas Furnham, Marialuisa Pellegrini-Calace, David T. Jones, Janet M. Thornton, Christine A. Orengo:
Extending CATH: increasing coverage of the protein structure universe and linking structure with function. Nucleic Acids Res. 39(Database-Issue): 420-426 (2011) - [c5]Tony E. Lewis, George D. Magoulas:
Identifying similarities in TMBL programs with alignment to quicken their compilation for GPUs: computational intelligence on consumer games and graphics hardware. GECCO (Companion) 2011: 447-454 - [c4]Tony E. Lewis, George D. Magoulas:
TMBL kernels for CUDA GPUs compile faster using PTX: computational intelligence on consumer games and graphics hardware. GECCO (Companion) 2011: 455-462 - 2010
- [c3]Tony E. Lewis, George D. Magoulas:
Tweaking a tower of blocks leads to a TMBL: Pursuing long term fitness growth in program evolution. IEEE Congress on Evolutionary Computation 2010: 1-8
2000 – 2009
- 2009
- [j3]Alison L. Cuff, Ian Sillitoe, Tony E. Lewis, Oliver Redfern, Richard Garratt, Janet M. Thornton, Christine A. Orengo:
The CATH classification revisited - architectures reviewed and new ways to characterize structural divergence in superfamilies. Nucleic Acids Res. 37(Database-Issue): 310-314 (2009) - [c2]Tony E. Lewis, George D. Magoulas:
Strategies to minimise the total run time of cyclic graph based genetic programming with GPUs. GECCO 2009: 1379-1386 - 2008
- [c1]Tony E. Lewis, George D. Magoulas:
TREAD: a new genetic programming representation aimed at research of long term complexity growth. GECCO 2008: 1339-1340 - 2007
- [j2]Lesley H. Greene, Tony E. Lewis, Sarah Addou, Alison L. Cuff, Timothy Dallman, Mark Dibley, Oliver Redfern, Frances M. G. Pearl, Rekha Nambudiry, Adam James Reid, Ian Sillitoe, Corin Yeats, Janet M. Thornton, Christine A. Orengo:
The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution. Nucleic Acids Res. 35(Database-Issue): 291-297 (2007) - 2005
- [j1]Frances M. G. Pearl, Annabel E. Todd, Ian Sillitoe, Mark Dibley, Oliver Redfern, Tony E. Lewis, Christopher Bennett, Russell L. Marsden, Alastair Grant, David A. Lee, Adrian Akpor, Michael Maibaum, Andrew P. Harrison, Timothy Dallman, Gabrielle A. Reeves, Ilhem Diboun, Sarah Addou, Stefano Lise, Caroline E. Johnston, Antonio Sillero, Janet M. Thornton, Christine A. Orengo:
The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. Nucleic Acids Res. 33(Database-Issue): 247-251 (2005)
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