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2020 – today
- 2022
[j11]Mengqi Zhang, Sahar Gelfman, Cristiane Araujo Martins Moreno
, Janice M. McCarthy, Matthew B. Harms, David B. Goldstein, Andrew S. Allen:
Focused goodness of fit tests for gene set analyses. Briefings Bioinform. 23(1) (2022)- 2021
- [j10]Kevin A. Murgas, Yanlin Ma, Lidea K. Shahidi, Sayan Mukherjee, Andrew S. Allen, Darryl Shibata, Marc D. Ryser:
A Bayesian hierarchical model to estimate DNA methylation conservation in colorectal tumors. Bioinform. 38(1): 22-29 (2021) - 2020
- [j9]William H. Majoros, Young-Sook Kim, Alejandro Barrera, Fan Li, Xingyan Wang, Sarah J. Cunningham, Graham D. Johnson, Cong Guo, William L. Lowe, Denise M. Scholtens, M. Geoffrey Hayes, Timothy E. Reddy, Andrew S. Allen:
Bayesian estimation of genetic regulatory effects in high-throughput reporter assays. Bioinform. 36(2): 331-338 (2020)
2010 – 2019
- 2019
- [j8]Zhiguo Li, Jiaxing Lin, Alexander B. Sibley, Tracy Truong, Katherina C. Chua, Yu Jiang, Janice M. McCarthy, Deanna L. Kroetz, Andrew S. Allen, Kouros Owzar:
Efficient estimation of grouped survival models. BMC Bioinform. 20(1): 269:1-269:11 (2019) - 2018
- [j7]Jiaxing Lin, Jeremy Gresham, Tongrong Wang, So Young Kim, James Alvarez, Jeffrey S. Damrauer, Scott Floyd, Joshua A. Granek, Andrew S. Allen, Cliburn Chan, Jichun Xie, Kouros Owzar:
bcSeq: an R package for fast sequence mapping in high-throughput shRNA and CRISPR screens. Bioinform. 34(20): 3581-3583 (2018) - [j6]Sahar Gelfman, Quanli Wang, Yi-Fan Lu, Diana Hall, Christopher D. Bostick, Ryan Dhindsa, Matt Halvorsen, K. Melodi McSweeney, Ellese Cotterill, Tom Edinburgh, Michael A. Beaumont, Wayne N. Frankel, Slavé Petrovski, Andrew S. Allen, Michael J. Boland, David B. Goldstein, Stephen J. Eglen:
meaRtools: An R package for the analysis of neuronal networks recorded on microelectrode arrays. PLoS Comput. Biol. 14(10) (2018) - 2017
- [j5]William H. Majoros, Michael Campbell, Carson Holt, Erin K. DeNardo, Doreen Ware, Andrew S. Allen, Mark Yandell, Timothy E. Reddy:
High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE. Bioinform. 33(10): 1437-1446 (2017) - [j4]Chaitanya R. Acharya, Kouros Owzar, Andrew S. Allen:
Mapping eQTL by leveraging multiple tissues and DNA methylation. BMC Bioinform. 18(1): 455 (2017) - [c2]Jingkang Zhao, Dongshunyi Li, Jungkyun Seo, Andrew S. Allen, Raluca Gordân:
Quantifying the Impact of Non-coding Variants on Transcription Factor-DNA Binding. RECOMB 2017: 336-352 - 2016
- [j3]Chaitanya R. Acharya, Janice M. McCarthy, Kouros Owzar, Andrew S. Allen:
Exploiting expression patterns across multiple tissues to map expression quantitative trait loci. BMC Bioinform. 17: 257 (2016) - 2014
- [b1]Andrew S. Allen:
Ruratae: a physics-based audio engine. University of California, San Diego, USA, 2014 - 2013
- [j2]Nanye Long, Samuel P. Dickson, Jessica M. Maia, Hee Shin Kim, Qianqian Zhu, Andrew S. Allen:
Leveraging Prior Information to Detect Causal Variants via Multi-Variant Regression. PLoS Comput. Biol. 9(6) (2013) - 2011
- [j1]Dongliang Ge, Elizabeth K. Ruzzo, Kevin V. Shianna, Min He, Kimberly Pelak, Erin L. Heinzen, Anna C. Need, Elizabeth T. Cirulli, Jessica M. Maia, Samuel P. Dickson, Mingfu Zhu, Abanish Singh, Andrew S. Allen, David B. Goldstein:
SVA: software for annotating and visualizing sequenced human genomes. Bioinform. 27(14): 1998-2000 (2011)
2000 – 2009
- 2008
- [c1]Andrew S. Allen:
Invited Keynote Talk: Haplotype Sharing for Genome-Wide Case-Control Association Studies. ISBRA 2008: 183
Coauthor Index
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