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ORCIDBibTeX records: Guergana K. Savova
@article{DBLP:journals/jamia/ChenLLVASB24,
author = {Shan Chen and
Yingya Li and
Sheng Lu and
Hoang Van and
Hugo J. W. L. Aerts and
Guergana K. Savova and
Danielle S. Bitterman},
title = {Evaluating the ChatGPT family of models for biomedical reasoning and
classification},
journal = {J. Am. Medical Informatics Assoc.},
volume = {31},
number = {4},
pages = {940--948},
year = {2024},
url = {https://doi.org/10.1093/jamia/ocad256},
doi = {10.1093/JAMIA/OCAD256},
timestamp = {Sun, 19 Jan 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/ChenLLVASB24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/GuevaraCTCFKMQGHACSMB24,
author = {Marco Guevara and
Shan Chen and
Spencer Thomas and
Tafadzwa L. Chaunzwa and
Idalid Franco and
Benjamin H. Kann and
Shalini Moningi and
Jack M. Qian and
Madeleine Goldstein and
Susan Harper and
Hugo J. W. L. Aerts and
Paul J. Catalano and
Guergana K. Savova and
Raymond H. Mak and
Danielle S. Bitterman},
title = {Large language models to identify social determinants of health in
electronic health records},
journal = {npj Digit. Medicine},
volume = {7},
number = {1},
year = {2024},
url = {https://doi.org/10.1038/s41746-023-00970-0},
doi = {10.1038/S41746-023-00970-0},
timestamp = {Fri, 08 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/npjdm/GuevaraCTCFKMQGHACSMB24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl-clinicalnlp/CaiWPSM24,
author = {Jon Z. Cai and
Kristin Wright{-}Bettner and
Martha Palmer and
Guergana Savova and
James H. Martin},
editor = {Tristan Naumann and
Asma Ben Abacha and
Steven Bethard and
Kirk Roberts and
Danielle S. Bitterman},
title = {Adapting Abstract Meaning Representation Parsing to the Clinical Narrative
- the {SPRING} {THYME} parser},
booktitle = {Proceedings of the 6th Clinical Natural Language Processing Workshop,
ClinicalNLP@NAACL 2024, Mexico City, Mexico, June 21, 2024},
pages = {271--282},
publisher = {Association for Computational Linguistics},
year = {2024},
url = {https://doi.org/10.18653/v1/2024.clinicalnlp-1.23},
doi = {10.18653/V1/2024.CLINICALNLP-1.23},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl-clinicalnlp/CaiWPSM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl-clinicalnlp/YaoHYGS24,
author = {Jiarui Yao and
Harry Hochheiser and
Wonjin Yoon and
Eli Goldner and
Guergana Savova},
editor = {Tristan Naumann and
Asma Ben Abacha and
Steven Bethard and
Kirk Roberts and
Danielle S. Bitterman},
title = {Overview of the 2024 Shared Task on Chemotherapy Treatment Timeline
Extraction},
booktitle = {Proceedings of the 6th Clinical Natural Language Processing Workshop,
ClinicalNLP@NAACL 2024, Mexico City, Mexico, June 21, 2024},
pages = {557--569},
publisher = {Association for Computational Linguistics},
year = {2024},
url = {https://doi.org/10.18653/v1/2024.clinicalnlp-1.53},
doi = {10.18653/V1/2024.CLINICALNLP-1.53},
timestamp = {Thu, 26 Sep 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl-clinicalnlp/YaoHYGS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2405-09153,
author = {Jon Z. Cai and
Kristin Wright{-}Bettner and
Martha Palmer and
Guergana K. Savova and
James H. Martin},
title = {Adapting Abstract Meaning Representation Parsing to the Clinical Narrative
- the {SPRING} {THYME} parser},
journal = {CoRR},
volume = {abs/2405.09153},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2405.09153},
doi = {10.48550/ARXIV.2405.09153},
eprinttype = {arXiv},
eprint = {2405.09153},
timestamp = {Wed, 12 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2405-09153.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2410-09937,
author = {Daniela Andreeva and
Guergana Savova},
title = {Artificial Intelligence in the Legal Field: Law Students Perspective},
journal = {CoRR},
volume = {abs/2410.09937},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2410.09937},
doi = {10.48550/ARXIV.2410.09937},
eprinttype = {arXiv},
eprint = {2410.09937},
timestamp = {Fri, 22 Nov 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2410-09937.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2410-12722,
author = {Jo{\~{a}}o Matos and
Shan Chen and
Siena Placino and
Yingya Li and
Juan Carlos Climent Pardo and
Daphna Idan and
Takeshi Tohyama and
David Restrepo and
Luis Filipe Nakayama and
Jose M. M. Pascual{-}Leone and
Guergana Savova and
Hugo J. W. L. Aerts and
Leo A. Celi and
An{-}Kwok Ian Wong and
Danielle S. Bitterman and
Jack Gallifant},
title = {WorldMedQA-V: a multilingual, multimodal medical examination dataset
for multimodal language models evaluation},
journal = {CoRR},
volume = {abs/2410.12722},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2410.12722},
doi = {10.48550/ARXIV.2410.12722},
eprinttype = {arXiv},
eprint = {2410.12722},
timestamp = {Thu, 20 Feb 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2410-12722.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2410-12774,
author = {Yingya Li and
Timothy A. Miller and
Steven Bethard and
Guergana Savova},
title = {Identifying Task Groupings for Multi-Task Learning Using Pointwise
V-Usable Information},
journal = {CoRR},
volume = {abs/2410.12774},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2410.12774},
doi = {10.48550/ARXIV.2410.12774},
eprinttype = {arXiv},
eprint = {2410.12774},
timestamp = {Sun, 24 Nov 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2410-12774.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ZhouYAGSM23,
author = {Weipeng Zhou and
Meliha Yetisgen and
Majid Afshar and
Yanjun Gao and
Guergana Savova and
Timothy A. Miller},
title = {Improving model transferability for clinical note section classification
models using continued pretraining},
journal = {J. Am. Medical Informatics Assoc.},
volume = {31},
number = {1},
pages = {89--97},
year = {2023},
url = {https://doi.org/10.1093/jamia/ocad190},
doi = {10.1093/JAMIA/OCAD190},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/ZhouYAGSM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/WangLMBS23,
author = {Lijing Wang and
Yingya Li and
Timothy A. Miller and
Steven Bethard and
Guergana Savova},
editor = {Anna Rogers and
Jordan L. Boyd{-}Graber and
Naoaki Okazaki},
title = {Two-Stage Fine-Tuning for Improved Bias and Variance for Large Pretrained
Language Models},
booktitle = {Proceedings of the 61st Annual Meeting of the Association for Computational
Linguistics (Volume 1: Long Papers), {ACL} 2023, Toronto, Canada,
July 9-14, 2023},
pages = {15746--15761},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.acl-long.877},
doi = {10.18653/V1/2023.ACL-LONG.877},
timestamp = {Tue, 04 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/acl/WangLMBS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl-clinicalnlp/YaoBWG0S23,
author = {Jiarui Yao and
Steven Bethard and
Kristin Wright{-}Bettner and
Eli Goldner and
David Harris and
Guergana Savova},
editor = {Tristan Naumann and
Asma Ben Abacha and
Steven Bethard and
Kirk Roberts and
Anna Rumshisky},
title = {Textual Entailment for Temporal Dependency Graph Parsing},
booktitle = {Proceedings of the 5th Clinical Natural Language Processing Workshop,
ClinicalNLP@ACL 2023, Toronto, Canada, July 14, 2023},
pages = {191--199},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.clinicalnlp-1.25},
doi = {10.18653/V1/2023.CLINICALNLP-1.25},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl-clinicalnlp/YaoBWG0S23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/MillerBDS23,
author = {Timothy A. Miller and
Steven Bethard and
Dmitriy Dligach and
Guergana Savova},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {End-to-end clinical temporal information extraction with multi-head
attention},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {313--319},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.28},
doi = {10.18653/V1/2023.BIONLP-1.28},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/MillerBDS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/LuCLBSG23,
author = {Sheng Lu and
Shan Chen and
Yingya Li and
Danielle S. Bitterman and
Guergana Savova and
Iryna Gurevych},
editor = {Houda Bouamor and
Juan Pino and
Kalika Bali},
title = {Measuring Pointwise {\textbackslash}mathcalV-Usable Information In-Context-ly},
booktitle = {Findings of the Association for Computational Linguistics: {EMNLP}
2023, Singapore, December 6-10, 2023},
pages = {15739--15756},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.findings-emnlp.1054},
doi = {10.18653/V1/2023.FINDINGS-EMNLP.1054},
timestamp = {Fri, 12 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/emnlp/LuCLBSG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2303-13722,
author = {Shan Chen and
Marco Guevara and
Nicolas Ramirez and
Arpi Murray and
Jeremy L. Warner and
Hugo J. W. L. Aerts and
Timothy A. Miller and
Guergana K. Savova and
Raymond H. Mak and
Danielle S. Bitterman},
title = {Natural language processing to automatically extract the presence
and severity of esophagitis in notes of patients undergoing radiotherapy},
journal = {CoRR},
volume = {abs/2303.13722},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2303.13722},
doi = {10.48550/ARXIV.2303.13722},
eprinttype = {arXiv},
eprint = {2303.13722},
timestamp = {Fri, 14 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2303-13722.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2304-02496,
author = {Shan Chen and
Yingya Li and
Sheng Lu and
Hoang Van and
Hugo J. W. L. Aerts and
Guergana K. Savova and
Danielle S. Bitterman},
title = {Evaluation of ChatGPT Family of Models for Biomedical Reasoning and
Classification},
journal = {CoRR},
volume = {abs/2304.02496},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2304.02496},
doi = {10.48550/ARXIV.2304.02496},
eprinttype = {arXiv},
eprint = {2304.02496},
timestamp = {Tue, 18 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2304-02496.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2308-06354,
author = {Marco Guevara and
Shan Chen and
Spencer Thomas and
Tafadzwa L. Chaunzwa and
Idalid Franco and
Benjamin H. Kann and
Shalini Moningi and
Jack M. Qian and
Madeleine Goldstein and
Susan Harper and
Hugo J. W. L. Aerts and
Guergana K. Savova and
Raymond H. Mak and
Danielle S. Bitterman},
title = {Large Language Models to Identify Social Determinants of Health in
Electronic Health Records},
journal = {CoRR},
volume = {abs/2308.06354},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2308.06354},
doi = {10.48550/ARXIV.2308.06354},
eprinttype = {arXiv},
eprint = {2308.06354},
timestamp = {Wed, 23 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2308-06354.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-12300,
author = {Sheng Lu and
Shan Chen and
Yingya Li and
Danielle S. Bitterman and
Guergana Savova and
Iryna Gurevych},
title = {Measuring Pointwise {\textdollar}{\textbackslash}mathcal\{V\}{\textdollar}-Usable
Information In-Context-ly},
journal = {CoRR},
volume = {abs/2310.12300},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2310.12300},
doi = {10.48550/ARXIV.2310.12300},
eprinttype = {arXiv},
eprint = {2310.12300},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2310-12300.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-17703,
author = {Shan Chen and
Marco Guevara and
Shalini Moningi and
Frank Hoebers and
Hesham Elhalawani and
Benjamin H. Kann and
Fallon E. Chipidza and
Jonathan Leeman and
Hugo J. W. L. Aerts and
Timothy A. Miller and
Guergana K. Savova and
Raymond H. Mak and
Maryam Lustberg and
Majid Afshar and
Danielle S. Bitterman},
title = {The impact of using an {AI} chatbot to respond to patient messages},
journal = {CoRR},
volume = {abs/2310.17703},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2310.17703},
doi = {10.48550/ARXIV.2310.17703},
eprinttype = {arXiv},
eprint = {2310.17703},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2310-17703.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HochheiserFYLDH22,
author = {Harry Hochheiser and
Sean Finan and
Zhou Yuan and
John D. Levander and
Eric B. Durbin and
Isaac Hands and
Ramakanth Kavuluru and
Jeremy L. Warner and
Guergana Savova},
title = {DeepPhe: Natural Language Processing Tools for Cancer Research and
Surveillance},
booktitle = {{AMIA} 2022, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 5-9, 2022},
publisher = {{AMIA}},
year = {2022},
url = {https://knowledge.amia.org/76677-amia-1.4637602/f009-1.4640668/f009-1.4640669/126-1.4640700/52-1.4640697},
timestamp = {Thu, 11 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/HochheiserFYLDH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LinMDBS21,
author = {Chen Lin and
Timothy A. Miller and
Dmitriy Dligach and
Steven Bethard and
Guergana Savova},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {EntityBERT: Entity-centric Masking Strategy for Model Pretraining
for the Clinical Domain},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {191--201},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.21},
doi = {10.18653/V1/2021.BIONLP-1.21},
timestamp = {Fri, 06 Aug 2021 00:41:22 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/LinMDBS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/GevaAMIMGLSM20,
author = {Alon Geva and
Steven H. Abman and
Shannon F. Manzi and
Dunbar D. Ivy and
Mary Mullen and
John Griffin and
Chen Lin and
Guergana K. Savova and
Kenneth D. Mandl},
title = {Adverse drug event rates in pediatric pulmonary hypertension: a comparison
of real-world data sources},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {2},
pages = {294--300},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocz194},
doi = {10.1093/JAMIA/OCZ194},
timestamp = {Tue, 20 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/GevaAMIMGLSM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LinBDSSM20,
author = {Chen Lin and
Steven Bethard and
Dmitriy Dligach and
Farig Sadeque and
Guergana Savova and
Timothy A. Miller},
title = {Does {BERT} need domain adaptation for clinical negation detection?},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {4},
pages = {584--591},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocaa001},
doi = {10.1093/JAMIA/OCAA001},
timestamp = {Tue, 20 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/LinBDSSM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl-clinicalnlp/BittermanMHLFWM20,
author = {Danielle S. Bitterman and
Timothy A. Miller and
David Harris and
Chen Lin and
Sean Finan and
Jeremy L. Warner and
Raymond H. Mak and
Guergana Savova},
editor = {Anna Rumshisky and
Kirk Roberts and
Steven Bethard and
Tristan Naumann},
title = {Extracting Relations between Radiotherapy Treatment Details},
booktitle = {Proceedings of the 3rd Clinical Natural Language Processing Workshop,
ClinicalNLP@EMNLP 2020, Online, November 19, 2020},
pages = {194--200},
publisher = {Association for Computational Linguistics},
year = {2020},
url = {https://doi.org/10.18653/v1/2020.clinicalnlp-1.21},
doi = {10.18653/V1/2020.CLINICALNLP-1.21},
timestamp = {Thu, 06 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl-clinicalnlp/BittermanMHLFWM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl-louhi/Wright-BettnerL20,
author = {Kristin Wright{-}Bettner and
Chen Lin and
Timothy A. Miller and
Steven Bethard and
Dmitriy Dligach and
Martha Palmer and
James H. Martin and
Guergana Savova},
editor = {Eben Holderness and
Antonio Jimeno{-}Yepes and
Alberto Lavelli and
Anne{-}Lyse Minard and
James Pustejovsky and
Fabio Rinaldi},
title = {Defining and Learning Refined Temporal Relations in the Clinical Narrative},
booktitle = {Proceedings of the 11th International Workshop on Health Text Mining
and Information Analysis, LOUHI@EMNLP 2020, Online, November 20, 2020},
pages = {104--114},
publisher = {Association for Computational Linguistics},
year = {2020},
url = {https://doi.org/10.18653/v1/2020.louhi-1.12},
doi = {10.18653/V1/2020.LOUHI-1.12},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl-louhi/Wright-BettnerL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ChapmanGJSH20,
author = {Wendy W. Chapman and
Adela Grando and
Merida L. Johns and
Guergana Savova and
Maia Hightower},
title = {Training Women for Leadership in Informatics and Digital Health: {A}
Report from the Inaugural Women in {AMIA} Leadership Program},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t002-1.4606605/t002-1.4606606/3414484-1.4606724/3411506-1.4606721},
timestamp = {Wed, 17 Apr 2024 11:47:01 +0200},
biburl = {https://dblp.org/rec/conf/amia/ChapmanGJSH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MeystreSSPM20,
author = {St{\'{e}}phane M. Meystre and
Jonathan C. Silverstein and
Guergana Savova and
Valentina Petkov and
Bradley A. Malin},
title = {De-Identification of Clinical Text: Stakeholders' Perspectives and
Acceptance of Automatic De-Identification},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t002-1.4606605/t002-1.4606606/3413747-1.4606661/3409693-1.4606658},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/MeystreSSPM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LinMDSBS20,
author = {Chen Lin and
Timothy A. Miller and
Dmitriy Dligach and
Farig Sadeque and
Steven Bethard and
Guergana Savova},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {A BERT-based One-Pass Multi-Task Model for Clinical Temporal Relation
Extraction},
booktitle = {Proceedings of the 19th SIGBioMed Workshop on Biomedical Language
Processing, BioNLP 2020, Online, July 9, 2020},
pages = {70--75},
publisher = {Association for Computational Linguistics},
year = {2020},
url = {https://doi.org/10.18653/v1/2020.bionlp-1.7},
doi = {10.18653/V1/2020.BIONLP-1.7},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/LinMDSBS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2006-13721,
author = {Cindy Li and
Elizabeth Chen and
Guergana Savova and
Hamish Fraser and
Carsten Eickhoff},
title = {Mining Misdiagnosis Patterns from Biomedical Literature},
journal = {CoRR},
volume = {abs/2006.13721},
year = {2020},
url = {https://arxiv.org/abs/2006.13721},
eprinttype = {arXiv},
eprint = {2006.13721},
timestamp = {Tue, 25 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2006-13721.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2006-13737,
author = {Gil Alon and
Elizabeth Chen and
Guergana Savova and
Carsten Eickhoff},
title = {Diagnosis Prevalence vs. Efficacy in Machine-learning Based Diagnostic
Decision Support},
journal = {CoRR},
volume = {abs/2006.13737},
year = {2020},
url = {https://arxiv.org/abs/2006.13737},
eprinttype = {arXiv},
eprint = {2006.13737},
timestamp = {Thu, 02 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2006-13737.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/VianiMNPSBS19,
author = {Natalia Viani and
Timothy A. Miller and
Carlo Napolitano and
Silvia G. Priori and
Guergana K. Savova and
Riccardo Bellazzi and
Lucia Sacchi},
title = {Supervised methods to extract clinical events from cardiology reports
in Italian},
journal = {J. Biomed. Informatics},
volume = {95},
year = {2019},
url = {https://doi.org/10.1016/j.jbi.2019.103219},
doi = {10.1016/J.JBI.2019.103219},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/VianiMNPSBS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl-louhi/Wright-BettnerP19,
author = {Kristin Wright{-}Bettner and
Martha Palmer and
Guergana Savova and
Piet C. de Groen and
Timothy A. Miller},
editor = {Eben Holderness and
Antonio Jimeno{-}Yepes and
Alberto Lavelli and
Anne{-}Lyse Minard and
James Pustejovsky and
Fabio Rinaldi},
title = {Cross-document coreference: An approach to capturing coreference without
context},
booktitle = {Proceedings of the Tenth International Workshop on Health Text Mining
and Information Analysis LOUHI@EMNLP 2019, Hong Kong, November 3,
2019},
pages = {1--10},
publisher = {Association for Computational Linguistics},
year = {2019},
url = {https://doi.org/10.18653/v1/D19-6201},
doi = {10.18653/V1/D19-6201},
timestamp = {Thu, 05 Aug 2021 17:36:17 +0200},
biburl = {https://dblp.org/rec/conf/acl-louhi/Wright-BettnerP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/NeveolDVSZ18,
author = {Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
Hercules Dalianis and
Sumithra Velupillai and
Guergana Savova and
Pierre Zweigenbaum},
title = {Clinical Natural Language Processing in languages other than English:
opportunities and challenges},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {12:1--12:13},
year = {2018},
url = {https://doi.org/10.1186/s13326-018-0179-8},
doi = {10.1186/S13326-018-0179-8},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/NeveolDVSZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl-louhi/LinMDABS18,
author = {Chen Lin and
Timothy A. Miller and
Dmitriy Dligach and
Hadi Amiri and
Steven Bethard and
Guergana Savova},
editor = {Alberto Lavelli and
Anne{-}Lyse Minard and
Fabio Rinaldi},
title = {Self-training improves Recurrent Neural Networks performance for Temporal
Relation Extraction},
booktitle = {Proceedings of the Ninth International Workshop on Health Text Mining
and Information Analysis, Louhi@EMNLP 2018, Brussels, Belgium, October
31, 2018},
pages = {165--176},
publisher = {Association for Computational Linguistics},
year = {2018},
url = {https://doi.org/10.18653/v1/w18-5619},
doi = {10.18653/V1/W18-5619},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl-louhi/LinMDABS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/AmiriMWSW18,
author = {Hadi Amiri and
Kara M. Magane and
Lauren E. Wisk and
Guergana Savova and
Elissa R. Weitzman},
title = {Toward Large-scale and Multi-facet Analysis of First Person Alcohol
Drinking},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t006-1.4263223/t006-1.4263224/2976242-1.4263597/2976400-1.4263594},
timestamp = {Wed, 17 Apr 2024 11:47:15 +0200},
biburl = {https://dblp.org/rec/conf/amia/AmiriMWSW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/GevaSSLMAM18,
author = {Alon Geva and
Jason P. Stedman and
Guergana Savova and
Chen Lin and
Shannon F. Manzi and
Paul Avillach and
Kenneth D. Mandl},
title = {{ADEPT:} An End-to-End System for High-Throughput Pharmacovigilance},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t008-1.4262115/t008-1.4262116/2970045-1.4262159/2973896-1.4262156},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/GevaSSLMAM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SavovaJLBJ18,
author = {Guergana Savova and
Merida L. Johns and
Nancy M. Lorenzi and
Patricia F. Brennan and
Rebecca Crowley Jacobson},
title = {Women in {AMIA} - Resources for Emerging Leaders},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t003-1.4264090/t003-1.4264091/2970665-1.4264101/2976697-1.4264098},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SavovaJLBJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WarnerSEBG18,
author = {Jeremy L. Warner and
Guergana Savova and
Noemie Elhadad and
Lisa Bastarache and
David Gotz},
title = {Computable Longitudinal Patient Trajectories},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t002-1.4264134/t002-1.4264135/2970686-1.4264142/2975567-1.4264139},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WarnerSEBG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/naacl/AmiriMS18,
author = {Hadi Amiri and
Timothy A. Miller and
Guergana Savova},
editor = {Marilyn A. Walker and
Heng Ji and
Amanda Stent},
title = {Spotting Spurious Data with Neural Networks},
booktitle = {Proceedings of the 2018 Conference of the North American Chapter of
the Association for Computational Linguistics: Human Language Technologies,
{NAACL-HLT} 2018, New Orleans, Louisiana, USA, June 1-6, 2018, Volume
1 (Long Papers)},
pages = {2006--2016},
publisher = {Association for Computational Linguistics},
year = {2018},
url = {https://doi.org/10.18653/v1/n18-1182},
doi = {10.18653/V1/N18-1182},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/naacl/AmiriMS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/MillerDBLS17,
author = {Timothy A. Miller and
Dmitriy Dligach and
Steven Bethard and
Chen Lin and
Guergana Savova},
title = {Towards generalizable entity-centric clinical coreference resolution},
journal = {J. Biomed. Informatics},
volume = {69},
pages = {251--258},
year = {2017},
url = {https://doi.org/10.1016/j.jbi.2017.04.015},
doi = {10.1016/J.JBI.2017.04.015},
timestamp = {Tue, 20 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/MillerDBLS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aime/VianiMDBNPBSS17,
author = {Natalia Viani and
Timothy A. Miller and
Dmitriy Dligach and
Steven Bethard and
Carlo Napolitano and
Silvia G. Priori and
Riccardo Bellazzi and
Lucia Sacchi and
Guergana K. Savova},
editor = {Annette ten Teije and
Christian Popow and
John H. Holmes and
Lucia Sacchi},
title = {Recurrent Neural Network Architectures for Event Extraction from Italian
Medical Reports},
booktitle = {Artificial Intelligence in Medicine - 16th Conference on Artificial
Intelligence in Medicine, {AIME} 2017, Vienna, Austria, June 21-24,
2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10259},
pages = {198--202},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-59758-4\_21},
doi = {10.1007/978-3-319-59758-4\_21},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aime/VianiMDBNPBSS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/NeveolEVXS17,
author = {Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
No{\'{e}}mie Elhadad and
Sumithra Velupillai and
Hua Xu and
Guergana Savova},
title = {Clinical Natural Language Processing in Languages Other Than English},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t002-1.4258887/f002-1.4258888/2730401-1.4258943/2731428-1.4258940},
timestamp = {Wed, 17 Apr 2024 11:47:24 +0200},
biburl = {https://dblp.org/rec/conf/amia/NeveolEVXS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SavovaTFCMMHHLC17,
author = {Guergana Savova and
Eugene Tseytlin and
Sean Finan and
Melissa Castine and
Timothy A. Miller and
Olga Medvedeva and
David Harris and
Harry Hochheiser and
Chen Lin and
Girish Chavan and
Rebecca Jacobson},
title = {DeepPhe - {A} Natural Language Processing System for Extracting Cancer
Phenotypes from Clinical Records},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t001-1.4259018/f001-1.4259019/2731845-1.4259110/2730617-1.4259107},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SavovaTFCMMHHLC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/MillerBAS17,
author = {Timothy A. Miller and
Steven Bethard and
Hadi Amiri and
Guergana Savova},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
Junichi Tsujii},
title = {Unsupervised Domain Adaptation for Clinical Negation Detection},
booktitle = {BioNLP 2017, Vancouver, Canada, August 4, 2017},
pages = {165--170},
publisher = {Association for Computational Linguistics},
year = {2017},
url = {https://doi.org/10.18653/v1/W17-2320},
doi = {10.18653/V1/W17-2320},
timestamp = {Fri, 06 Aug 2021 00:41:21 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/MillerBAS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LinMDBS17,
author = {Chen Lin and
Timothy A. Miller and
Dmitriy Dligach and
Steven Bethard and
Guergana Savova},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
Junichi Tsujii},
title = {Representations of Time Expressions for Temporal Relation Extraction
with Convolutional Neural Networks},
booktitle = {BioNLP 2017, Vancouver, Canada, August 4, 2017},
pages = {322--327},
publisher = {Association for Computational Linguistics},
year = {2017},
url = {https://doi.org/10.18653/v1/W17-2341},
doi = {10.18653/V1/W17-2341},
timestamp = {Tue, 20 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/LinMDBS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eacl/BethardMDLS17,
author = {Dmitriy Dligach and
Timothy A. Miller and
Chen Lin and
Steven Bethard and
Guergana Savova},
editor = {Mirella Lapata and
Phil Blunsom and
Alexander Koller},
title = {Neural Temporal Relation Extraction},
booktitle = {Proceedings of the 15th Conference of the European Chapter of the
Association for Computational Linguistics, {EACL} 2017, Valencia,
Spain, April 3-7, 2017, Volume 2: Short Papers},
pages = {746--751},
publisher = {Association for Computational Linguistics},
year = {2017},
url = {https://doi.org/10.18653/v1/e17-2118},
doi = {10.18653/V1/E17-2118},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/eacl/BethardMDLS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/AmiriMS17,
author = {Hadi Amiri and
Timothy A. Miller and
Guergana Savova},
editor = {Martha Palmer and
Rebecca Hwa and
Sebastian Riedel},
title = {Repeat before Forgetting: Spaced Repetition for Efficient and Effective
Training of Neural Networks},
booktitle = {Proceedings of the 2017 Conference on Empirical Methods in Natural
Language Processing, {EMNLP} 2017, Copenhagen, Denmark, September
9-11, 2017},
pages = {2401--2410},
publisher = {Association for Computational Linguistics},
year = {2017},
url = {https://doi.org/10.18653/v1/d17-1255},
doi = {10.18653/V1/D17-1255},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/emnlp/AmiriMS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/BethardSPP17,
author = {Steven Bethard and
Guergana Savova and
Martha Palmer and
James Pustejovsky},
editor = {Steven Bethard and
Marine Carpuat and
Marianna Apidianaki and
Saif M. Mohammad and
Daniel M. Cer and
David Jurgens},
title = {SemEval-2017 Task 12: Clinical TempEval},
booktitle = {Proceedings of the 11th International Workshop on Semantic Evaluation,
SemEval@ACL 2017, Vancouver, Canada, August 3-4, 2017},
pages = {565--572},
publisher = {Association for Computational Linguistics},
year = {2017},
url = {https://doi.org/10.18653/v1/S17-2093},
doi = {10.18653/V1/S17-2093},
timestamp = {Fri, 06 Aug 2021 00:39:34 +0200},
biburl = {https://dblp.org/rec/conf/semeval/BethardSPP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ranlp/2017biomedical,
editor = {Svetla Boytcheva and
Kevin Bretonnel Cohen and
Guergana Savova and
Galia Angelova},
title = {Proceedings of the Biomedical {NLP} Workshop associated with {RANLP}
2017, Varna, Bulgaria, September 2017},
publisher = {{INCOMA} Ltd.},
year = {2017},
url = {https://aclanthology.org/volumes/W17-80/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ranlp/2017biomedical.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aci/BradyNKBPNDCRCK16,
author = {Cassandra Brady and
Bahram Namjou and
Stephanie Kennebeck and
Jonathan Bickel and
Nandan Patibandla and
Yizhao Ni and
Sara Van Driest and
Lixin Chen and
Ashton Roach and
Beth Cobb and
Jacqueline Kirby and
Joshua C. Denny and
Lisa Bailey{-}Davis and
Marc S. Williams and
Keith Marsolo and
Imre Solti and
Ingrid A. Holm and
John Harley and
Isaac S. Kohane and
Guergana Savova and
Nancy Crimmins and
Todd Lingren and
Vidhu Thaker},
title = {Developing an Algorithm to Detect Early Childhood Obesity in Two Tertiary
Pediatric Medical Centers},
journal = {Appl. Clin. Inform.},
volume = {07},
number = {03},
pages = {693--706},
year = {2016},
url = {https://doi.org/10.4338/aci-2016-01-ra-0015},
doi = {10.4338/ACI-2016-01-RA-0015},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/aci/BradyNKBPNDCRCK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/MowerySCLPSSMVE16,
author = {Danielle L. Mowery and
Brett R. South and
Lee M. Christensen and
Jianwei Leng and
Laura{-}Maria Peltonen and
Sanna Salanter{\"{a}} and
Hanna Suominen and
David Mart{\'{\i}}nez and
Sumithra Velupillai and
No{\'{e}}mie Elhadad and
Guergana Savova and
Sameer Pradhan and
Wendy W. Chapman},
title = {Normalizing acronyms and abbreviations to aid patient understanding
of clinical texts: ShARe/CLEF eHealth Challenge 2013, Task 2},
journal = {J. Biomed. Semant.},
volume = {7},
pages = {43},
year = {2016},
url = {https://doi.org/10.1186/s13326-016-0084-y},
doi = {10.1186/S13326-016-0084-Y},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biomedsem/MowerySCLPSSMVE16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LinDMBS16,
author = {Chen Lin and
Dmitriy Dligach and
Timothy A. Miller and
Steven Bethard and
Guergana K. Savova},
title = {Multilayered temporal modeling for the clinical domain},
journal = {J. Am. Medical Informatics Assoc.},
volume = {23},
number = {2},
pages = {387--395},
year = {2016},
url = {https://doi.org/10.1093/jamia/ocv113},
doi = {10.1093/JAMIA/OCV113},
timestamp = {Tue, 20 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/LinDMBS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/KirbySRBGPPTPCE16,
author = {Jacqueline Kirby and
Peter Speltz and
Luke V. Rasmussen and
Melissa A. Basford and
Omri Gottesman and
Peggy L. Peissig and
Jennifer A. Pacheco and
Gerard Tromp and
Jyotishman Pathak and
David S. Carrell and
Stephen B. Ellis and
Todd Lingren and
William K. Thompson and
Guergana Savova and
Jonathan L. Haines and
Dan M. Roden and
Paul A. Harris and
Joshua C. Denny},
title = {PheKB: a catalog and workflow for creating electronic phenotype algorithms
for transportability},
journal = {J. Am. Medical Informatics Assoc.},
volume = {23},
number = {6},
pages = {1046--1052},
year = {2016},
url = {https://doi.org/10.1093/jamia/ocv202},
doi = {10.1093/JAMIA/OCV202},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/KirbySRBGPPTPCE16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/HochheiserCHSJ16,
author = {Harry Hochheiser and
Melissa Castine and
David Harris and
Guergana Savova and
Rebecca S. Jacobson},
title = {An information model for computable cancer phenotypes},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {16},
pages = {121},
year = {2016},
url = {https://doi.org/10.1186/s12911-016-0358-4},
doi = {10.1186/S12911-016-0358-4},
timestamp = {Sun, 06 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/HochheiserCHSJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MeystreLXAWPSWZ16,
author = {St{\'{e}}phane M. Meystre and
Hongfang Liu and
Rong Xu and
Sivaram Arabandi and
Kavishwar B. Wagholikar and
Jon D. Patrick and
Guergana K. Savova and
Chunhua Weng and
Pierre Zweigenbaum and
Dina Demner{-}Fushman and
{\"{O}}zlem Uzuner and
Hua Xu},
title = {Natural Language Processing Working Group Pre-Symposium: Graduate
Student Consortium and 'Hackathon'},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t009-1.3369175/f009-1.3369176/2499034-1.3369215/2499356-1.3369212},
timestamp = {Wed, 14 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/MeystreLXAWPSWZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MillerDLBS16,
author = {Timothy A. Miller and
Dmitriy Dligach and
Chen Lin and
Steven Bethard and
Guergana Savova},
title = {Feature Portability in Cross-domain Clinical Coreference},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t001-1.3365273/f001-1.3365274/2499016-1.3365459/2499817-1.3365454},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/MillerDLBS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/MillerDS16,
author = {Timothy A. Miller and
Dmitriy Dligach and
Guergana Savova},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
Jun'ichi Tsujii},
title = {Unsupervised Document Classification with Informed Topic Models},
booktitle = {Proceedings of the 15th Workshop on Biomedical Natural Language Processing,
BioNLP@ACL 2016, Berlin, Germany, August 12, 2016},
pages = {83--91},
publisher = {Association for Computational Linguistics},
year = {2016},
url = {https://doi.org/10.18653/v1/W16-2911},
doi = {10.18653/V1/W16-2911},
timestamp = {Fri, 06 Aug 2021 00:41:22 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/MillerDS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LinMDBS16,
author = {Chen Lin and
Timothy A. Miller and
Dmitriy Dligach and
Steven Bethard and
Guergana Savova},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
Jun'ichi Tsujii},
title = {Improving Temporal Relation Extraction with Training Instance Augmentation},
booktitle = {Proceedings of the 15th Workshop on Biomedical Natural Language Processing,
BioNLP@ACL 2016, Berlin, Germany, August 12, 2016},
pages = {108--113},
publisher = {Association for Computational Linguistics},
year = {2016},
url = {https://doi.org/10.18653/v1/W16-2914},
doi = {10.18653/V1/W16-2914},
timestamp = {Tue, 20 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/LinMDBS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/BethardSCDPV16,
author = {Steven Bethard and
Guergana Savova and
Wei{-}Te Chen and
Leon Derczynski and
James Pustejovsky and
Marc Verhagen},
editor = {Steven Bethard and
Daniel M. Cer and
Marine Carpuat and
David Jurgens and
Preslav Nakov and
Torsten Zesch},
title = {SemEval-2016 Task 12: Clinical TempEval},
booktitle = {Proceedings of the 10th International Workshop on Semantic Evaluation,
SemEval@NAACL-HLT 2016, San Diego, CA, USA, June 16-17, 2016},
publisher = {The Association for Computer Linguistics},
year = {2016},
url = {https://doi.org/10.18653/v1/s16-1165},
doi = {10.18653/V1/S16-1165},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semeval/BethardSCDPV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/PradhanES0CVSCS15,
author = {Sameer Pradhan and
No{\'{e}}mie Elhadad and
Brett R. South and
David Mart{\'{\i}}nez and
Lee M. Christensen and
Amy Vogel and
Hanna Suominen and
Wendy W. Chapman and
Guergana Savova},
title = {Evaluating the state of the art in disorder recognition and normalization
of the clinical narrative},
journal = {J. Am. Medical Informatics Assoc.},
volume = {22},
number = {1},
pages = {143--154},
year = {2015},
url = {https://doi.org/10.1136/amiajnl-2013-002544},
doi = {10.1136/AMIAJNL-2013-002544},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/PradhanES0CVSCS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LinKDRMMBCGDS15,
author = {Chen Lin and
Elizabeth W. Karlson and
Dmitriy Dligach and
Monica P. Ramirez and
Timothy A. Miller and
Huan Mo and
Natalie S. Braggs and
Andrew Cagan and
Vivian S. Gainer and
Joshua C. Denny and
Guergana K. Savova},
title = {Automatic identification of methotrexate-induced liver toxicity in
patients with rheumatoid arthritis from the electronic medical record},
journal = {J. Am. Medical Informatics Assoc.},
volume = {22},
number = {e1},
pages = {e151--e161},
year = {2015},
url = {https://doi.org/10.1136/amiajnl-2014-002642},
doi = {10.1136/AMIAJNL-2014-002642},
timestamp = {Tue, 20 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/LinKDRMMBCGDS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/DligachMS15,
author = {Dmitriy Dligach and
Timothy A. Miller and
Guergana Savova},
title = {Semi-supervised Learning for Phenotyping Tasks},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t004-1.2745466/f004-1.2745467/2246390-1.2745759/2247088-1.2745756},
timestamp = {Wed, 17 Apr 2024 11:47:40 +0200},
biburl = {https://dblp.org/rec/conf/amia/DligachMS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/KartounKCYLKAXG15,
author = {Uri Kartoun and
Vishesh Kumar and
Su{-}Chun Cheng and
Sheng Yu and
Katherine P. Liao and
Elizabeth W. Karlson and
Ashwin N. Ananthakrishnan and
Zongqi Xia and
Vivian S. Gainer and
Andrew Cagan and
Guergana Savova and
Pei J. Chen and
Shawn N. Murphy and
Susanne E. Churchill and
Isaac S. Kohane and
Peter Szolovits and
Tianxi Cai and
Stanley Y. Shaw},
title = {Demonstrating the Advantages of Applying Data Mining Techniques on
Time-Dependent Electronic Medical Records},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t001-1.2745946/f001-1.2745947/2248164-1.2746113/2248716-1.2746110},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/KartounKCYLKAXG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MillerFDS15,
author = {Timothy A. Miller and
Sean Finan and
Dmitriy Dligach and
Guergana Savova},
title = {Robust Sentence Segmentation for Clinical Text},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t001-1.2745946/f001-1.2745947/2231286-1.2746047/2248387-1.2746044},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/MillerFDS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SavovaJDWH15,
author = {Guergana Savova and
Rebecca S. Jacobson and
Joshua C. Denny and
Nicole L. Washington and
Harry Hochheiser},
title = {Natural Language Processing for Phenotype Extraction: Challenges in
Extraction and Representation},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t002-1.2745869/f002-1.2745870/2223904-1.2745886/2248024-1.2745883},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SavovaJDWH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/MillerBDLS15,
author = {Timothy A. Miller and
Steven Bethard and
Dmitriy Dligach and
Chen Lin and
Guergana Savova},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
Jun'ichi Tsujii},
title = {Extracting Time Expressions from Clinical Text},
booktitle = {Proceedings of the Workshop on Biomedical Natural Language Processing,
BioNLP@IJCNLP 2015, Beijing, China, July 30, 2015},
pages = {81--91},
publisher = {Association for Computational Linguistics},
year = {2015},
url = {https://doi.org/10.18653/v1/W15-3809},
doi = {10.18653/V1/W15-3809},
timestamp = {Fri, 06 Aug 2021 00:41:21 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/MillerBDLS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/ElhadadPGMCS15,
author = {No{\'{e}}mie Elhadad and
Sameer Pradhan and
Sharon Lipsky Gorman and
Suresh Manandhar and
Wendy W. Chapman and
Guergana K. Savova},
editor = {Daniel M. Cer and
David Jurgens and
Preslav Nakov and
Torsten Zesch},
title = {SemEval-2015 Task 14: Analysis of Clinical Text},
booktitle = {Proceedings of the 9th International Workshop on Semantic Evaluation,
SemEval@NAACL-HLT 2015, Denver, Colorado, USA, June 4-5, 2015},
pages = {303--310},
publisher = {The Association for Computer Linguistics},
year = {2015},
url = {https://doi.org/10.18653/v1/s15-2051},
doi = {10.18653/V1/S15-2051},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semeval/ElhadadPGMCS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/BethardDSPV15,
author = {Steven Bethard and
Leon Derczynski and
Guergana Savova and
James Pustejovsky and
Marc Verhagen},
editor = {Daniel M. Cer and
David Jurgens and
Preslav Nakov and
Torsten Zesch},
title = {SemEval-2015 Task 6: Clinical TempEval},
booktitle = {Proceedings of the 9th International Workshop on Semantic Evaluation,
SemEval@NAACL-HLT 2015, Denver, Colorado, USA, June 4-5, 2015},
pages = {806--814},
publisher = {The Association for Computer Linguistics},
year = {2015},
url = {https://doi.org/10.18653/v1/s15-2136},
doi = {10.18653/V1/S15-2136},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semeval/BethardDSPV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/DligachBBMS14,
author = {Dmitriy Dligach and
Steven Bethard and
Lee Becker and
Timothy A. Miller and
Guergana K. Savova},
title = {Discovering body site and severity modifiers in clinical texts},
journal = {J. Am. Medical Informatics Assoc.},
volume = {21},
number = {3},
pages = {448--454},
year = {2014},
url = {https://doi.org/10.1136/amiajnl-2013-001766},
doi = {10.1136/AMIAJNL-2013-001766},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/DligachBBMS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tacl/StylerBFPPGEMLSP14,
author = {William F. Styler IV and
Steven Bethard and
Sean Finan and
Martha Palmer and
Sameer Pradhan and
Piet C. de Groen and
Bradley James Erickson and
Timothy A. Miller and
Chen Lin and
Guergana K. Savova and
James Pustejovsky},
title = {Temporal Annotation in the Clinical Domain},
journal = {Trans. Assoc. Comput. Linguistics},
volume = {2},
pages = {143--154},
year = {2014},
url = {https://doi.org/10.1162/tacl\_a\_00172},
doi = {10.1162/TACL\_A\_00172},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tacl/StylerBFPPGEMLSP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/LinMKBDPS14,
author = {Chen Lin and
Timothy A. Miller and
Alvin Kho and
Steven Bethard and
Dmitriy Dligach and
Sameer Pradhan and
Guergana Savova},
title = {Descending-Path Convolution Kernel for Syntactic Structures},
booktitle = {Proceedings of the 52nd Annual Meeting of the Association for Computational
Linguistics, {ACL} 2014, June 22-27, 2014, Baltimore, MD, USA, Volume
2: Short Papers},
pages = {81--86},
publisher = {The Association for Computer Linguistics},
year = {2014},
url = {https://doi.org/10.3115/v1/p14-2014},
doi = {10.3115/V1/P14-2014},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl/LinMKBDPS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/FinanGS14,
author = {Sean Finan and
Piet C. de Groen and
Guergana Savova},
title = {Narrative Event and Temporal Relation Visualization Tool},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-008-1.1543755/f-008-1.1543756/a-627-1.1543784/a-628-1.1543781},
timestamp = {Wed, 17 Apr 2024 11:47:48 +0200},
biburl = {https://dblp.org/rec/conf/amia/FinanGS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HaugWFSHC14,
author = {Peter J. Haug and
Xinzi Wu and
Jeffrey P. Ferraro and
Guergana Savova and
Stanley M. Huff and
Christopher G. Chute},
title = {Developing a Section Labeler for Clinical Documents},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-004-1.1544972/f-004-1.1544973/a-160-1.1545193/a-161-1.1545190},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/HaugWFSHC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/NeveolDSZ14,
author = {Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
Hercules Dalianis and
Guergana Savova and
Pierre Zweigenbaum},
title = {Clinical Natural Language Processing in Languages Other Than English},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-002-1.1545363/f-002-1.1545364/a-098-1.1545383/a-099-1.1545380},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/NeveolDSZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/VelupillaiMCEPS14,
author = {Sumithra Velupillai and
Danielle L. Mowery and
Lee M. Christensen and
Noemie Elhadad and
Sameer Pradhan and
Guergana K. Savova and
Wendy W. Chapman},
title = {Disease/Disorder Semantic Template Filling - Information Extraction
Challenge in the ShARe/CLEF eHealth Evaluation Lab 2014},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-005-1.1543914/f-005-1.1543915/a-544-1.1544039/a-545-1.1544036},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/VelupillaiMCEPS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/MoweryVSCMKGEPSC14,
author = {Danielle L. Mowery and
Sumithra Velupillai and
Brett R. South and
Lee M. Christensen and
David Mart{\'{\i}}nez and
Liadh Kelly and
Lorraine Goeuriot and
No{\'{e}}mie Elhadad and
Sameer Pradhan and
Guergana K. Savova and
Wendy W. Chapman},
editor = {Linda Cappellato and
Nicola Ferro and
Martin Halvey and
Wessel Kraaij},
title = {Task 2: ShARe/CLEF eHealth Evaluation Lab 2014},
booktitle = {Working Notes for {CLEF} 2014 Conference, Sheffield, UK, September
15-18, 2014},
series = {{CEUR} Workshop Proceedings},
volume = {1180},
pages = {31--42},
publisher = {CEUR-WS.org},
year = {2014},
url = {https://ceur-ws.org/Vol-1180/CLEF2014wn-eHealth-MoweryEt2014.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:41 +0100},
biburl = {https://dblp.org/rec/conf/clef/MoweryVSCMKGEPSC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/PradhanECMS14,
author = {Sameer Pradhan and
No{\'{e}}mie Elhadad and
Wendy W. Chapman and
Suresh Manandhar and
Guergana Savova},
editor = {Preslav Nakov and
Torsten Zesch},
title = {SemEval-2014 Task 7: Analysis of Clinical Text},
booktitle = {Proceedings of the 8th International Workshop on Semantic Evaluation,
SemEval@COLING 2014, Dublin, Ireland, August 23-24, 2014},
pages = {54--62},
publisher = {The Association for Computer Linguistics},
year = {2014},
url = {https://doi.org/10.3115/v1/s14-2007},
doi = {10.3115/V1/S14-2007},
timestamp = {Thu, 25 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semeval/PradhanECMS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/WuKDMCBCSLC13,
author = {Stephen T. Wu and
Vinod Kaggal and
Dmitriy Dligach and
James J. Masanz and
Pei J. Chen and
Lee Becker and
Wendy Webber Chapman and
Guergana K. Savova and
Hongfang Liu and
Christopher G. Chute},
title = {A common type system for clinical natural language processing},
journal = {J. Biomed. Semant.},
volume = {4},
pages = {1},
year = {2013},
url = {https://doi.org/10.1186/2041-1480-4-1},
doi = {10.1186/2041-1480-4-1},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/WuKDMCBCSLC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/DelegerMSXLLMJKSS13,
author = {Louise Del{\'{e}}ger and
Katalin Moln{\'{a}}r and
Guergana Savova and
Fei Xia and
Todd Lingren and
Qi Li and
Keith Marsolo and
Anil G. Jegga and
Megan Kaiser and
Laura Stoutenborough and
Imre Solti},
title = {Large-scale evaluation of automated clinical note de-identification
and its impact on information extraction},
journal = {J. Am. Medical Informatics Assoc.},
volume = {20},
number = {1},
pages = {84--94},
year = {2013},
url = {https://doi.org/10.1136/amiajnl-2012-001012},
doi = {10.1136/AMIAJNL-2012-001012},
timestamp = {Tue, 12 Nov 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/DelegerMSXLLMJKSS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/AlbrightLFSWHCDNMWPS13,
author = {Daniel Albright and
Arrick Lanfranchi and
Anwen Fredriksen and
William F. Styler IV and
Colin Warner and
Jena D. Hwang and
Jinho D. Choi and
Dmitriy Dligach and
Rodney D. Nielsen and
James H. Martin and
Wayne H. Ward and
Martha Palmer and
Guergana K. Savova},
title = {Towards comprehensive syntactic and semantic annotations of the clinical
narrative},
journal = {J. Am. Medical Informatics Assoc.},
volume = {20},
number = {5},
pages = {922--930},
year = {2013},
url = {https://doi.org/10.1136/amiajnl-2012-001317},
doi = {10.1136/AMIAJNL-2012-001317},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/AlbrightLFSWHCDNMWPS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/McMurryFSKR13,
author = {Andrew J. McMurry and
Britt Fitch and
Guergana Savova and
Isaac S. Kohane and
Ben Y. Reis},
title = {Improved de-identification of physician notes through integrative
modeling of both public and private medical text},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {13},
pages = {112},
year = {2013},
url = {https://doi.org/10.1186/1472-6947-13-112},
doi = {10.1186/1472-6947-13-112},
timestamp = {Sun, 06 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/McMurryFSKR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/DligachMS13,
author = {Dmitriy Dligach and
Timothy A. Miller and
Guergana Savova},
title = {Discovering Body Site and Severity Modifiers in Clinical Texts},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-02-1.584671/f-002-1.584672/a-107-1.584881/a-117-1.584876},
timestamp = {Wed, 17 Apr 2024 11:47:55 +0200},
biburl = {https://dblp.org/rec/conf/amia/DligachMS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LinKCMDCPSWSPS13,
author = {Chen Lin and
Elizabeth W. Karlson and
Helena Canh{\~{a}}o and
Timothy A. Miller and
Dmitriy Dligach and
Pei J. Chen and
Ra{\'{u}}l N. P{\'{e}}rez and
Yuanyuan Shen and
Michael E. Weinblatt and
Nancy A. Shadick and
Robert M. Plenge and
Guergana Savova},
title = {Automatic Prediction of Rheumatoid Arthritis Disease Activity from
the Electronic Medical Records},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-02-1.584671/f-002-1.584672/a-292-1.584816/a-303-1.584811},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/LinKCMDCPSWSPS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MillerDBPLS13,
author = {Timothy A. Miller and
Dmitriy Dligach and
Steven Bethard and
Sameer Pradhan and
Chen Lin and
Guergana K. Savova},
title = {Discovering Time Expressions in Clinical Text},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-03-1.584514/f-003-1.584515/a-342-1.584603/a-355-1.584598},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/MillerDBPLS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SavovaCEP13,
author = {Guergana Savova and
Wendy Webber Chapman and
Noemie Elhadad and
Martha Palmer},
title = {Panel: Shared Resources, Shared Code, and Shared Activities in Clinical
Natural Language Processing},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-04-1.584348/f-004-1.584349/a-456-1.584395/a-461-1.584392},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SavovaCEP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/MillerBDPLS13,
author = {Timothy A. Miller and
Steven Bethard and
Dmitriy Dligach and
Sameer Pradhan and
Chen Lin and
Guergana Savova},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
John Pestian and
Junichi Tsujii},
title = {Discovering Temporal Narrative Containers in Clinical Text},
booktitle = {Proceedings of the 2013 Workshop on Biomedical Natural Language Processing,
BioNLP@ACL 2013, Sofia, Bulgaria, August 8, 2013},
pages = {18--26},
publisher = {Association for Computational Linguistics},
year = {2013},
url = {https://aclanthology.org/W13-1903/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/MillerBDPLS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/MowerySCMSSMEPSC13,
author = {Danielle L. Mowery and
Brett R. South and
Lee M. Christensen and
Laura{-}Maria Murtola and
Sanna Salanter{\"{a}} and
Hanna Suominen and
David Mart{\'{\i}}nez and
No{\'{e}}mie Elhadad and
Sameer Pradhan and
Guergana K. Savova and
Wendy W. Chapman},
editor = {Pamela Forner and
Roberto Navigli and
Dan Tufis and
Nicola Ferro},
title = {Task 2: ShARe/CLEF eHealth Evaluation Lab 2013},
booktitle = {Working Notes for {CLEF} 2013 Conference , Valencia, Spain, September
23-26, 2013},
series = {{CEUR} Workshop Proceedings},
volume = {1179},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-1179/CLEF2013wn-CLEFeHealth-MoweryEt2013.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:37 +0100},
biburl = {https://dblp.org/rec/conf/clef/MowerySCMSSMEPSC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/PradhanESMCVSCS13,
author = {Sameer Pradhan and
No{\'{e}}mie Elhadad and
Brett R. South and
David Mart{\'{\i}}nez and
Lee M. Christensen and
Amy Vogel and
Hanna Suominen and
Wendy W. Chapman and
Guergana K. Savova},
editor = {Pamela Forner and
Roberto Navigli and
Dan Tufis and
Nicola Ferro},
title = {Task 1: ShARe/CLEF eHealth Evaluation Lab 2013},
booktitle = {Working Notes for {CLEF} 2013 Conference , Valencia, Spain, September
23-26, 2013},
series = {{CEUR} Workshop Proceedings},
volume = {1179},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-1179/CLEF2013wn-CLEFeHealth-PradhanEt2013.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/clef/PradhanESMCVSCS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/SuominenSVCSEPSMJLKGMZ13,
author = {Hanna Suominen and
Sanna Salanter{\"{a}} and
Sumithra Velupillai and
Wendy Webber Chapman and
Guergana K. Savova and
Noemie Elhadad and
Sameer Pradhan and
Brett R. South and
Danielle L. Mowery and
Gareth J. F. Jones and
Johannes Leveling and
Liadh Kelly and
Lorraine Goeuriot and
David Mart{\'{\i}}nez and
Guido Zuccon},
editor = {Pamela Forner and
Henning M{\"{u}}ller and
Roberto Paredes and
Paolo Rosso and
Benno Stein},
title = {Overview of the ShARe/CLEF eHealth Evaluation Lab 2013},
booktitle = {Information Access Evaluation. Multilinguality, Multimodality, and
Visualization - 4th International Conference of the {CLEF} Initiative,
{CLEF} 2013, Valencia, Spain, September 23-26, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8138},
pages = {212--231},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40802-1\_24},
doi = {10.1007/978-3-642-40802-1\_24},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/clef/SuominenSVCSEPSMJLKGMZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ranlp/DligachMS13,
author = {Dmitriy Dligach and
Timothy A. Miller and
Guergana Savova},
editor = {Guergana Savova and
Kevin Bretonnel Cohen and
Galia Angelova},
title = {Active Learning for Phenotyping Tasks},
booktitle = {Proceedings of the Workshop on {NLP} for Medicine and Biology associated
with {RANLP} 2013, Hissar, Bulgaria, September 13, 2013},
pages = {1--8},
publisher = {{INCOMA} Ltd. Shoumen, {BULGARIA}},
year = {2013},
url = {https://aclanthology.org/W13-5101/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ranlp/DligachMS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ranlp/2013medbio,
editor = {Guergana Savova and
Kevin Bretonnel Cohen and
Galia Angelova},
title = {Proceedings of the Workshop on {NLP} for Medicine and Biology associated
with {RANLP} 2013, Hissar, Bulgaria, September 13, 2013},
publisher = {{INCOMA} Ltd. Shoumen, {BULGARIA}},
year = {2013},
url = {https://aclanthology.org/volumes/W13-51/},
isbn = {978-954-452-024-3},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ranlp/2013medbio.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ZhengCMLCS12,
author = {Jiaping Zheng and
Wendy Webber Chapman and
Timothy A. Miller and
Chen Lin and
Rebecca S. Crowley and
Guergana K. Savova},
title = {A system for coreference resolution for the clinical narrative},
journal = {J. Am. Medical Informatics Assoc.},
volume = {19},
number = {4},
pages = {660--667},
year = {2012},
url = {https://doi.org/10.1136/amiajnl-2011-000599},
doi = {10.1136/AMIAJNL-2011-000599},
timestamp = {Tue, 20 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/ZhengCMLCS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SavovaOMCCGISCW12,
author = {Guergana K. Savova and
Janet E. Olson and
Sean P. Murphy and
Victoria L. Cafourek and
Fergus J. Couch and
Matthew P. Goetz and
James N. Ingle and
Vera J. Suman and
Christopher G. Chute and
Richard M. Weinshilboum},
title = {Automated discovery of drug treatment patterns for endocrine therapy
of breast cancer within an electronic medical record},
journal = {J. Am. Medical Informatics Assoc.},
volume = {19},
number = {e1},
year = {2012},
url = {https://doi.org/10.1136/amiajnl-2011-000295},
doi = {10.1136/AMIAJNL-2011-000295},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/SavovaOMCCGISCW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/ChapmanSZTC12,
author = {Wendy Webber Chapman and
Guergana K. Savova and
Jiaping Zheng and
Melissa Tharp and
Rebecca S. Crowley},
title = {Anaphoric reference in clinical reports: Characteristics of an annotated
corpus},
journal = {J. Biomed. Informatics},
volume = {45},
number = {3},
pages = {507--521},
year = {2012},
url = {https://doi.org/10.1016/j.jbi.2012.01.010},
doi = {10.1016/J.JBI.2012.01.010},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/ChapmanSZTC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/ReaPSOWBTPHHC12,
author = {Susan Rea and
Jyotishman Pathak and
Guergana K. Savova and
Thomas A. Oniki and
Les Westberg and
Calvin E. Beebe and
Cui Tao and
Craig G. Parker and
Peter J. Haug and
Stanley M. Huff and
Christopher G. Chute},
title = {Building a robust, scalable and standards-driven infrastructure for
secondary use of {EHR} data: The SHARPn project},
journal = {J. Biomed. Informatics},
volume = {45},
number = {4},
pages = {763--771},
year = {2012},
url = {https://doi.org/10.1016/j.jbi.2012.01.009},
doi = {10.1016/J.JBI.2012.01.009},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/ReaPSOWBTPHHC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/MillerDS12,
author = {Timothy A. Miller and
Dmitriy Dligach and
Guergana Savova},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
Bonnie L. Webber and
Jun'ichi Tsujii and
John Pestian},
title = {Active Learning for Coreference Resolution},
booktitle = {Proceedings of the 2012 Workshop on Biomedical Natural Language Processing,
BioNLP@HLT-NAACL Montr{\`{e}}al, Canada, June 8, 2012},
pages = {73--81},
publisher = {Association for Computational Linguistics},
year = {2012},
url = {https://aclanthology.org/W12-2409/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/MillerDS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SavovaCZC11,
author = {Guergana K. Savova and
Wendy Webber Chapman and
Jiaping Zheng and
Rebecca S. Crowley},
title = {Anaphoric relations in the clinical narrative: corpus creation},
journal = {J. Am. Medical Informatics Assoc.},
volume = {18},
number = {4},
pages = {459--465},
year = {2011},
url = {https://doi.org/10.1136/amiajnl-2011-000108},
doi = {10.1136/AMIAJNL-2011-000108},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/SavovaCZC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ChapmanNHDSU11,
author = {Wendy Webber Chapman and
Prakash M. Nadkarni and
Lynette Hirschman and
Leonard W. D'Avolio and
Guergana K. Savova and
{\"{O}}zlem Uzuner},
title = {Overcoming barriers to {NLP} for clinical text: the role of shared
tasks and the need for additional creative solutions},
journal = {J. Am. Medical Informatics Assoc.},
volume = {18},
number = {5},
pages = {540--543},
year = {2011},
url = {https://doi.org/10.1136/amiajnl-2011-000465},
doi = {10.1136/AMIAJNL-2011-000465},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/ChapmanNHDSU11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SohnKCS11,
author = {Sunghwan Sohn and
Jean{-}Pierre A. Kocher and
Christopher G. Chute and
Guergana K. Savova},
title = {Drug side effect extraction from clinical narratives of psychiatry
and psychology patients},
journal = {J. Am. Medical Informatics Assoc.},
volume = {18},
number = {Supplement},
pages = {144--149},
year = {2011},
url = {https://doi.org/10.1136/amiajnl-2011-000351},
doi = {10.1136/AMIAJNL-2011-000351},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/SohnKCS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/ZhengCCS11,
author = {Jiaping Zheng and
Wendy Webber Chapman and
Rebecca S. Crowley and
Guergana K. Savova},
title = {Coreference resolution: {A} review of general methodologies and applications
in the clinical domain},
journal = {J. Biomed. Informatics},
volume = {44},
number = {6},
pages = {1113--1122},
year = {2011},
url = {https://doi.org/10.1016/j.jbi.2011.08.006},
doi = {10.1016/J.JBI.2011.08.006},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/ZhengCCS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SavovaMOZSSC10,
author = {Guergana K. Savova and
James J. Masanz and
Philip V. Ogren and
Jiaping Zheng and
Sunghwan Sohn and
Karin Kipper Schuler and
Christopher G. Chute},
title = {Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES):
architecture, component evaluation and applications},
journal = {J. Am. Medical Informatics Assoc.},
volume = {17},
number = {5},
pages = {507--513},
year = {2010},
url = {https://doi.org/10.1136/jamia.2009.001560},
doi = {10.1136/JAMIA.2009.001560},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/SavovaMOZSSC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/KulloFPSAC10,
author = {Iftikhar J. Kullo and
Jin Fan and
Jyotishman Pathak and
Guergana K. Savova and
Zeenat Ali and
Christopher G. Chute},
title = {Leveraging informatics for genetic studies: use of the electronic
medical record to enable a genome-wide association study of peripheral
arterial disease},
journal = {J. Am. Medical Informatics Assoc.},
volume = {17},
number = {5},
pages = {568--574},
year = {2010},
url = {https://doi.org/10.1136/jamia.2010.004366},
doi = {10.1136/JAMIA.2010.004366},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/KulloFPSAC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/ChengZSE10,
author = {Lionel Tim{-}Ee Cheng and
Jiaping Zheng and
Guergana K. Savova and
Bradley James Erickson},
title = {Discerning Tumor Status from Unstructured {MRI} Reports - Completeness
of Information in Existing Reports and Utility of Automated Natural
Language Processing},
journal = {J. Digit. Imaging},
volume = {23},
number = {2},
pages = {119--132},
year = {2010},
url = {https://doi.org/10.1007/s10278-009-9215-7},
doi = {10.1007/S10278-009-9215-7},
timestamp = {Fri, 22 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jdi/ChengZSE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ihi/NielsenMOWMSP10,
author = {Rodney D. Nielsen and
James J. Masanz and
Philip V. Ogren and
Wayne H. Ward and
James H. Martin and
Guergana K. Savova and
Martha Palmer},
editor = {Tiffany C. Veinot and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Gang Luo and
Henrique Andrade and
Neil R. Smalheiser},
title = {An architecture for complex clinical question answering},
booktitle = {{ACM} International Health Informatics Symposium, {IHI} 2010, Arlington,
VA, USA, November 11 - 12, 2010, Proceedings},
pages = {395--399},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1882992.1883050},
doi = {10.1145/1882992.1883050},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ihi/NielsenMOWMSP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/TaoSSWSC10,
author = {Cui Tao and
Harold R. Solbrig and
Deepak K. Sharma and
Wei{-}Qi Wei and
Guergana K. Savova and
Christopher G. Chute},
editor = {Peter F. Patel{-}Schneider and
Yue Pan and
Pascal Hitzler and
Peter Mika and
Lei Zhang and
Jeff Z. Pan and
Ian Horrocks and
Birte Glimm},
title = {Time-Oriented Question Answering from Clinical Narratives Using Semantic-Web
Techniques},
booktitle = {The Semantic Web - {ISWC} 2010 - 9th International Semantic Web Conference,
{ISWC} 2010, Shanghai, China, November 7-11, 2010, Revised Selected
Papers, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {6497},
pages = {241--256},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-17749-1\_16},
doi = {10.1007/978-3-642-17749-1\_16},
timestamp = {Sun, 19 Jan 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/semweb/TaoSSWSC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/CodenSSTMSCGG09,
author = {Anni Coden and
Guergana K. Savova and
Igor L. Sominsky and
Michael A. Tanenblatt and
James J. Masanz and
Karin Schuler and
James W. Cooper and
Wei Guan and
Piet C. de Groen},
title = {Automatically extracting cancer disease characteristics from pathology
reports into a Disease Knowledge Representation Model},
journal = {J. Biomed. Informatics},
volume = {42},
number = {5},
pages = {937--949},
year = {2009},
url = {https://doi.org/10.1016/j.jbi.2008.12.005},
doi = {10.1016/J.JBI.2008.12.005},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/CodenSSTMSCGG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SavovaBSMPMW09,
author = {Guergana Savova and
Steven Bethard and
William F. Styler IV and
James H. Martin and
Martha Palmer and
James J. Masanz and
Wayne H. Ward},
title = {Towards Temporal Relation Discovery from the Clinical Narrative},
booktitle = {{AMIA} 2009, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2009},
publisher = {{AMIA}},
year = {2009},
url = {https://knowledge.amia.org/amia-55142-a2009a-1.626575/t-001-1.627318/f-001-1.627319/a-109-1.627424/a-110-1.627421},
timestamp = {Wed, 17 Apr 2024 11:48:10 +0200},
biburl = {https://dblp.org/rec/conf/amia/SavovaBSMPMW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SohnS09,
author = {Sunghwan Sohn and
Guergana K. Savova},
title = {Mayo Clinic Smoking Status Classification System: Extensions and Improvements},
booktitle = {{AMIA} 2009, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2009},
publisher = {{AMIA}},
year = {2009},
url = {https://knowledge.amia.org/amia-55142-a2009a-1.626575/t-001-1.627318/f-001-1.627319/a-119-1.627394/a-120-1.627391},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SohnS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ranlp/2009bie,
editor = {Guergana Savova and
Vangelis Karkaletsis and
Galia Angelova},
title = {Proceedings of the Workshop on Biomedical Information Extraction@RANLP
2009, Borovets, Bulgaria, September 18, 2009},
publisher = {Association for Computational Linguistics},
year = {2009},
url = {https://aclanthology.org/volumes/W09-45/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ranlp/2009bie.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SavovaODBC08,
author = {Guergana K. Savova and
Philip V. Ogren and
Patrick H. Duffy and
James D. Buntrock and
Christopher G. Chute},
title = {Technical Brief: Mayo Clinic {NLP} System for Patient Smoking Status
Identification},
journal = {J. Am. Medical Informatics Assoc.},
volume = {15},
number = {1},
pages = {25--28},
year = {2008},
url = {https://doi.org/10.1197/jamia.M2437},
doi = {10.1197/JAMIA.M2437},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/SavovaODBC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/SavovaCSJOGC08,
author = {Guergana K. Savova and
Anni Coden and
Igor L. Sominsky and
Rie Johnson and
Philip V. Ogren and
Piet C. de Groen and
Christopher G. Chute},
title = {Word sense disambiguation across two domains: Biomedical literature
and clinical notes},
journal = {J. Biomed. Informatics},
volume = {41},
number = {6},
pages = {1088--1100},
year = {2008},
url = {https://doi.org/10.1016/j.jbi.2008.02.003},
doi = {10.1016/J.JBI.2008.02.003},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/SavovaCSJOGC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LiSS08,
author = {Dingcheng Li and
Guergana Savova and
Karin Kipper Schuler},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Bretonnel Cohen and
John Pestian and
Jun'ichi Tsujii and
Bonnie L. Webber},
title = {Conditional Random Fields and Support Vector Machines for Disorder
Named Entity Recognition in Clinical Texts},
booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural
Language Processing, BioNLP 2008, Columbus, Ohio, USA, June 19, 2008},
pages = {94--95},
publisher = {Association for Computational Linguistics},
year = {2008},
url = {https://aclanthology.org/W08-0615/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/LiSS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/OgrenSC08,
author = {Philip V. Ogren and
Guergana K. Savova and
Christopher G. Chute},
title = {Constructing Evaluation Corpora for Automated Clinical Named Entity
Recognition},
booktitle = {Proceedings of the International Conference on Language Resources
and Evaluation, {LREC} 2008, 26 May - 1 June 2008, Marrakech, Morocco},
publisher = {European Language Resources Association},
year = {2008},
url = {http://www.lrec-conf.org/proceedings/lrec2008/summaries/796.html},
timestamp = {Mon, 19 Aug 2019 15:22:28 +0200},
biburl = {https://dblp.org/rec/conf/lrec/OgrenSC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/SchulerKMOS08,
author = {Karin Schuler and
Vinod Kaggal and
James J. Masanz and
Philip V. Ogren and
Guergana K. Savova},
title = {System Evaluation on a Named Entity Corpus from Clinical Notes},
booktitle = {Proceedings of the International Conference on Language Resources
and Evaluation, {LREC} 2008, 26 May - 1 June 2008, Marrakech, Morocco},
publisher = {European Language Resources Association},
year = {2008},
url = {http://www.lrec-conf.org/proceedings/lrec2008/summaries/764.html},
timestamp = {Mon, 19 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/lrec/SchulerKMOS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/OgrenSBC06,
author = {Philip V. Ogren and
Guergana Savova and
James D. Buntrock and
Christopher G. Chute},
title = {Building and Evaluating Annotated Corpora for Medical {NLP} Systems},
booktitle = {{AMIA} 2006, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 11-15, 2006},
publisher = {{AMIA}},
year = {2006},
url = {https://knowledge.amia.org/amia-55142-a2006a-1.620145/t-002-1.622268/f-001-1.622269/a-378-1.622606/a-379-1.622603},
timestamp = {Wed, 17 Apr 2024 11:48:16 +0200},
biburl = {https://dblp.org/rec/conf/amia/OgrenSBC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaaiss/WattersMMMBGSPGPS05,
author = {Shana Watters and
Brian McInnes and
David McKoskey and
Timothy A. Miller and
Daniel Boley and
Maria L. Gini and
William Schuler and
A. Polukeyeva and
Jeanette K. Gundel and
Sergey V. Pakhomov and
Guergana Savova},
title = {Using Volunteers to Annotate Biomedical Corpora for Anaphora Resolution},
booktitle = {Knowledge Collection from Volunteer Contributors, Papers from the
2005 {AAAI} Spring Symposium, Technical Report SS-05-03, Stanford,
California, USA, March 21-23, 2005},
pages = {117},
publisher = {{AAAI}},
year = {2005},
url = {http://www.aaai.org/Library/Symposia/Spring/2005/ss05-03-019.php},
timestamp = {Thu, 17 Jul 2014 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aaaiss/WattersMMMBGSPGPS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SavovaHPC05,
author = {Guergana Savova and
Marcelline R. Harris and
Serguei Pakhomov and
Christopher G. Chute},
title = {Frame Semantics and the Domain of Functioning, Disability and Health},
booktitle = {{AMIA} 2005, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, October 22-26, 2005},
publisher = {{AMIA}},
year = {2005},
url = {https://knowledge.amia.org/amia-55142-a2005a-1.613296/t-003-1.615259/f-001-1.615260/a-403-1.615470/a-404-1.615467},
timestamp = {Wed, 17 Apr 2024 11:48:22 +0200},
biburl = {https://dblp.org/rec/conf/amia/SavovaHPC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/HarrisSJC03,
author = {Marcelline R. Harris and
Guergana K. Savova and
Thomas M. Johnson and
Christopher G. Chute},
title = {A term extraction tool for expanding content in the domain of functioning,
disability, and health: proof of concept},
journal = {J. Biomed. Informatics},
volume = {36},
number = {4-5},
pages = {250--259},
year = {2003},
url = {https://doi.org/10.1016/j.jbi.2003.09.005},
doi = {10.1016/J.JBI.2003.09.005},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/HarrisSJC03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HarrisKRSC03,
author = {Marcelline R. Harris and
Hyeoneui Kim and
Lori Rhudy and
Guergana Savova and
Christopher G. Chute},
title = {Testing the Generalizability of the {ISO} Model for Nursing Diagnoses},
booktitle = {{AMIA} 2003, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2003},
publisher = {{AMIA}},
year = {2003},
url = {https://knowledge.amia.org/amia-55142-a2003a-1.616734/t-001-1.619623/f-001-1.619624/a-055-1.619937/a-056-1.619934},
timestamp = {Wed, 17 Apr 2024 11:48:28 +0200},
biburl = {https://dblp.org/rec/conf/amia/HarrisKRSC03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SavovaHJPC03,
author = {Guergana K. Savova and
Marcelline R. Harris and
Thomas M. Johnson and
Serguei V. S. Pakhomov and
Christopher G. Chute},
title = {A Data-Driven Approach for Extracting "the Most Specific Term"
for Ontology Development},
booktitle = {{AMIA} 2003, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2003},
publisher = {{AMIA}},
year = {2003},
url = {https://knowledge.amia.org/amia-55142-a2003a-1.616734/t-001-1.619623/f-001-1.619624/a-117-1.619749/a-118-1.619745},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SavovaHJPC03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/diss/SavovaB03,
author = {Guergana K. Savova and
Joan Bachenko},
title = {Prosodic features of four types of disfluencies},
booktitle = {{ISCA} Tutorial and Research Workshop {(ITRW)} on Disfluency in Spontaneous
Speech, DiSS 2003, G{\"{o}}teborg, Sweden, September 5-8, 2003},
pages = {91--94},
publisher = {{ISCA}},
year = {2003},
url = {https://www.isca-archive.org/diss\_2003/savova03\_diss.html},
timestamp = {Thu, 01 Aug 2024 09:06:05 +0200},
biburl = {https://dblp.org/rec/conf/diss/SavovaB03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/interspeech/SavovaB03,
author = {Guergana K. Savova and
Joan Bachenko},
title = {Designing for errors: similarities and differences of disfluency rates
and prosodic characteristics across domains},
booktitle = {8th European Conference on Speech Communication and Technology, {EUROSPEECH}
2003 - {INTERSPEECH} 2003, Geneva, Switzerland, September 1-4, 2003},
pages = {229--232},
publisher = {{ISCA}},
year = {2003},
url = {https://doi.org/10.21437/Eurospeech.2003-106},
doi = {10.21437/EUROSPEECH.2003-106},
timestamp = {Thu, 22 Jun 2023 16:42:17 +0200},
biburl = {https://dblp.org/rec/conf/interspeech/SavovaB03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/interspeech/SavovaSP00,
author = {Guergana Savova and
Michael Schonwetter and
Sergey V. Pakhomov},
title = {Improving language model perplexity and recognition accuracy for medical
dictations via within-domain interpolation with literal and semi-literal
corpora},
booktitle = {Sixth International Conference on Spoken Language Processing, {ICSLP}
2000 / {INTERSPEECH} 2000, Beijing, China, October 16-20, 2000},
pages = {206--209},
publisher = {{ISCA}},
year = {2000},
url = {https://doi.org/10.21437/ICSLP.2000-51},
doi = {10.21437/ICSLP.2000-51},
timestamp = {Thu, 22 Jun 2023 16:42:19 +0200},
biburl = {https://dblp.org/rec/conf/interspeech/SavovaSP00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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