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2020 – today
- 2022
[j34]Maxwell Adam Levinson
, Justin Niestroy, Sadnan Al Manir, Karen Fairchild, Douglas E. Lake, J. Randall Moorman, Timothy W. Clark:
FAIRSCAPE: a Framework for FAIR and Reproducible Biomedical Analytics. Neuroinformatics 20(1): 187-202 (2022)- [j33]Justin Niestroy, J. Randall Moorman, Maxwell Adam Levinson, Sadnan Al Manir, Timothy W. Clark, Karen Fairchild, Douglas E. Lake:
Discovery of signatures of fatal neonatal illness in vital signs using highly comparative time-series analysis. npj Digit. Medicine 5 (2022) - 2021
- [c10]Sadnan Al Manir, Justin Niestroy, Maxwell Adam Levinson, Timothy W. Clark:
Evidence Graphs: Supporting Transparent and FAIR Computation, with Defeasible Reasoning on Data, Methods, and Results. IPAW 2021: 39-50 - [c9]Tim Clark:
The FAIRSCAPE digital commons framework and Evidence Graphs for reproducibility (keynote). DISCO@JCDL 2021: 3 - 2020
- [j32]Daniel S. Katz, Neil P. Chue Hong, Tim Clark, Martin Fenner, Maryann E. Martone:
Software and Data Citation. Comput. Sci. Eng. 22(2): 4-7 (2020) - [j31]Nick S. Juty, Sarala M. Wimalaratne, Stian Soiland-Reyes, John A. Kunze, Carole A. Goble, Tim Clark:
Unique, Persistent, Resolvable: Identifiers as the Foundation of FAIR. Data Intell. 2(1-2): 30-39 (2020) - [j30]Paul Groth, Helena Cousijn, Tim Clark, Carole A. Goble:
FAIR Data Reuse - the Path through Data Citation. Data Intell. 2(1-2): 78-86 (2020)
2010 – 2019
- 2019
- [i8]Daniel S. Katz, Daina Bouquin, Neil P. Chue Hong, Jessica Hausman, Catherine Mary Jones, Daniel Chivvis, Tim Clark, Mercè Crosas, Stephan Druskat, Martin Fenner, Tom Gillespie, Alejandra N. González-Beltrán, Morane Gruenpeter, Ted Habermann, Robert Haines, Melissa Harrison, Edwin A. Henneken, Lorraine J. Hwang, Matthew B. Jones, Alastair A. Kelly, David N. Kennedy, Katrin Leinweber, Fernando Rios, Carly Robinson, Ilian T. Todorov, Mingfang Wu, Qian Zhang:
Software Citation Implementation Challenges. CoRR abs/1905.08674 (2019) - 2017
- [j29]Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Arnold Kuzniar, Anand Gavai, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier:
Interoperability and FAIRness through a novel combination of Web technologies. PeerJ Comput. Sci. 3: e110 (2017) - [i7]Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Arnold Kuzniar, Anand Gavai, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier:
Interoperability and FAIRness through a novel combination of Web technologies. PeerJ Prepr. 5: e2522 (2017) - 2016
- [i6]Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier:
Interoperability and FAIRness through a novel combination of Web technologies. PeerJ Prepr. 4: e2522 (2016) - 2015
- [j28]Joan Starr, Eleni Castro, Mercè Crosas, Michel Dumontier, Robert R. Downs, Ruth E. Duerr, Laurel L. Haak, Melissa A. Haendel, Iván Herman, Simon Hodson, Joe Hourclé, John Ernest Kratz, Jennifer Lin, Lars Holm Nielsen, Amy Nurnberger, Stefan Pröll, Andreas Rauber, Simone Sacchi, Arthur P. Smith, Michael Taylor, Tim Clark:
Achieving human and machine accessibility of cited data in scholarly publications. PeerJ Comput. Sci. 1: e1 (2015) - [c8]Tim Clark, Carsten Keßler, Hemant Purohit:
Feasibility of Information Interoperability in the Humanitarian Domain. AAAI Spring Symposia 2015 - [c7]Jodi Schneider, Mathias Brochhausen, Samuel Rosko, Paolo Ciccarese, William R. Hogan, Daniel C. Malone, Yifan Ning, Tim Clark, Richard D. Boyce:
Formalizing Knowledge and Evidence about Potential Drug-drug Interactions. BDM2I@ISWC 2015 - [i5]Joan Starr, Eleni Castro, Mercè Crosas, Michel Dumontier, Robert R. Downs, Ruth E. Duerr, Laurel L. Haak, Melissa A. Haendel, Iván Herman, Simon Hodson, Joe Hourclé, John Ernest Kratz, Jennifer Lin, Lars Holm Nielsen, Amy Nurnberger, Stefan Pröll, Andreas Rauber, Simone Sacchi, Arthur P. Smith, Michael Taylor, Tim Clark:
Achieving human and machine accessibility of cited data in scholarly publications. PeerJ Prepr. 3: e697 (2015) - 2014
- [j27]Tim Clark, Paolo Ciccarese, Carole A. Goble:
Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications. J. Biomed. Semant. 5: 28 (2014) - [j26]Emily Merrill, Stephane Corlosquet, Paolo Ciccarese, Tim Clark, Sudeshna Das:
Semantic Web repositories for genomics data using the eXframe platform. J. Biomed. Semant. 5(S-1): S3 (2014) - [j25]Sudeshna Das, Patricia G. Mccaffrey, Megan Talkington, Neil Andrews, Stephane Corlosquet, Adrian Ivinson, Tim Clark:
Pain Research Forum: application of scientific social media frameworks in neuroscience. Frontiers Neuroinformatics 8: 21 (2014) - [j24]Tim Clark:
Simulating "soft" electronics. J. Cheminformatics 6(S-1): 19 (2014) - [j23]Tim Clark:
Next Generation Scientific Publishing and the Web of Data. Semantic Web 5(4): 257-259 (2014) - [j22]Paolo Ciccarese, David M. Shotton, Silvio Peroni, Tim Clark:
CiTO + SWAN: The web semantics of bibliographic records, citations, evidence and discourse relationships. Semantic Web 5(4): 295-311 (2014) - [j21]Tim Clark, Marco Roos:
Recent applications of web semantics in eLifeScience. J. Web Semant. 29: 1-2 (2014) - [c6]Jodi Schneider, Paolo Ciccarese, Tim Clark, Richard D. Boyce:
Using the Micropublications Ontology and the Open Annotation Data Model to Represent Evidence within a Drug-Drug Interaction Knowledge Base. LISC@ISWC 2014: 60-70 - [c5]Paolo Ciccarese, Tim Clark:
Annotopia: An Open Source Universal Annotation Server for Biomedical Research. SWAT4LS 2014 - [c4]Emily Merrill, Shannan J. Ho Sui, Stephane Corlosquet, Tim Clark, Sudeshna Das:
Using eXframe to Build Semantic Web Genomics Repositories. SWAT4LS 2014 - 2013
- [j20]Paolo Ciccarese, Stian Soiland-Reyes, Khalid Belhajjame, Alasdair J. G. Gray, Carole A. Goble, Tim Clark:
PAV ontology: provenance, authoring and versioning. J. Biomed. Semant. 4: 37 (2013) - [j19]Paolo Ciccarese, Stian Soiland-Reyes, Tim Clark:
Web Annotation as a First-Class Object. IEEE Internet Comput. 17(6): 71-75 (2013) - [i4]Paolo Ciccarese, Stian Soiland-Reyes, Khalid Belhajjame, Alasdair J. G. Gray, Carole A. Goble, Tim Clark:
PAV ontology: Provenance, Authoring and Versioning. CoRR abs/1304.7224 (2013) - [i3]Tim Clark, Paolo Ciccarese, Carole A. Goble:
Micropublications: a Semantic Model for Claims, Evidence, Arguments and Annotations in Biomedical Communications. CoRR abs/1305.3506 (2013) - [i2]Paolo Ciccarese, Stian Soiland-Reyes, Tim Clark:
Web Annotation as a First Class Object. CoRR abs/1310.6555 (2013) - 2012
- [j18]Anita E. Bandrowski, Jonathan Cachat, Yuling Li, Hans-Michael Müller, Paul W. Sternberg, Paolo Ciccarese, Tim Clark, Luis N. Marenco, Rixin Wang, Vadim Astakhov, Jeffrey S. Grethe, Maryann E. Martone:
A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework. Database J. Biol. Databases Curation 2012 (2012) - [j17]Paolo Ciccarese, Marco Ocana, Tim Clark:
Open semantic annotation of scientific publications using DOMEO. J. Biomed. Semant. 3(S-1): S1 (2012) - [c3]Timothy W. Clark, William W. Cohen, Lawrence Hunter, Chris J. Lintott, Jude W. Shavlik:
Invited Talks. AAAI Fall Symposium: Discovery Informatics 2012 - 2011
- [j16]Joanne S. Luciano, Bosse Andersson, Colin R. Batchelor, Olivier Bodenreider, Tim Clark, Christine K. Denney, Christopher Domarew, Thomas Gambet, Lee Harland, Anja Jentzsch, Vipul Kashyap, Peter J. Kos, Julia Kozlovsky, Timothy Lebo, M. Scott Marshall, Jamie P. McCusker, Deborah L. McGuinness, Chimezie Ogbuji, Elgar Pichler, Robert L. Powers, Eric Prud'hommeaux, Matthias Samwald, Lynn M. Schriml, Peter J. Tonellato, Patricia L. Whetzel, Jun Zhao, Susie Stephens, Michel Dumontier:
The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside. J. Biomed. Semant. 2(S-2): S1 (2011) - [j15]Paolo Ciccarese, Marco Ocana, Leyla Jael García Castro, Sudeshna Das, Tim Clark:
An open annotation ontology for science on web 3.0. J. Biomed. Semant. 2(S-2): S4 (2011) - [j14]Amit U. Sinha, Emily Merrill, Scott A. Armstrong, Timothy W. Clark, Sudeshna Das:
eXframe: reusable framework for storage, analysis and visualization of genomics experiments. BMC Bioinform. 12: 452 (2011) - [j13]Philip E. Bourne, Timothy W. Clark, Robert Dale, Anita de Waard, Ivan Herman, Eduard H. Hovy, David M. Shotton:
Improving The Future of Research Communications and e-Scholarship (Dagstuhl Perspectives Workshop 11331). Dagstuhl Manifestos 1(1): 41-60 (2011) - [i1]Tim Clark, Anita de Waard, Ivan Herman, Eduard H. Hovy:
The Future of Research Communication (Dagstuhl Perspectives Workshop 11331). Dagstuhl Reports 1(8): 29-52 (2011)
2000 – 2009
- 2009
- [j12]Sudeshna Das, Lisa Girard, Tom Green, Louis Weitzman, Alister Lewis-Bowen, Tim Clark:
Building biomedical web communities using a semantically aware content management system. Briefings Bioinform. 10(2): 129-138 (2009) - [c2]Mark Goetz, Tim Clark, Sudeshna Das, Lisa Girard:
Scientific publications on Web 3.0. ELPUB 2009: 107-129 - [c1]Stephane Corlosquet, Renaud Delbru, Tim Clark, Axel Polleres, Stefan Decker:
Produce and Consume Linked Data with Drupal! ISWC 2009: 763-778 - 2008
- [j11]Paolo Ciccarese, Elizabeth Wu, Gwendolyn T. Wong, Marco Ocana, June Kinoshita, Alan Ruttenberg, Tim Clark:
The SWAN biomedical discourse ontology. J. Biomed. Informatics 41(5): 739-751 (2008) - 2007
- [j10]Tim Clark:
Knowledge Integration in Biomedicine: Technology and Community. Briefings Bioinform. 8(3) (2007) - [j9]Tim Clark, June Kinoshita:
Alzforum and SWAN: the present and future of scientific web communities. Briefings Bioinform. 8(3): 163-171 (2007) - [j8]Tim Clark:
Knowledge Integration in Biomedicine: Technology and Community. Briefings Bioinform. 8(5): 380 (2007) - [j7]Hugo Y. K. Lam, Luis N. Marenco, Tim Clark, Yong Gao, June Kinoshita, Gordon M. Shepherd, Perry L. Miller, Elizabeth Wu, Gwendolyn T. Wong, Nian Liu, Chiquito J. Crasto, Thomas M. Morse, Susie Stephens, Kei-Hoi Cheung:
AlzPharm: integration of neurodegeneration data using RDF. BMC Bioinform. 8(S-3) (2007) - [j6]Alan Ruttenberg, Tim Clark, William J. Bug, Matthias Samwald, Olivier Bodenreider, Helen Chen, Donald Doherty, Kerstin Forsberg, Yong Gao, Vipul Kashyap, June Kinoshita, Joanne Luciano, M. Scott Marshall, Chimezie Ogbuji, Jonathan Rees, Susie Stephens, Gwendolyn T. Wong, Elizabeth Wu, Davide Zaccagnini, Tonya Hongsermeier, Eric Neumann, Ivan Herman, Kei-Hoi Cheung:
Advancing translational research with the Semantic Web. BMC Bioinform. 8(S-3) (2007) - 2006
- [j5]Yong Gao, June Kinoshita, Elizabeth Wu, Eric L. Miller, Ryan Lee, Andy Seaborne, Steve Cayzer, Tim Clark:
SWAN: A distributed knowledge infrastructure for Alzheimer disease research. J. Web Semant. 4(3): 222-228 (2006) - 2004
- [j4]Tim Clark, Sean Martin, Ted Liefeld:
Globally distributed object identification for biological knowledgebases. Briefings Bioinform. 5(1): 59-70 (2004) - 2003
- [j3]Tim Clark:
Editorial: Identity and Interoperability in Bioinformatics. Briefings Bioinform. 4(1): 4-6 (2003) - [j2]David Ficenec, Mark Osborne, Joël R. Pradines, Daniel R. Richards, Ramon M. Felciano, Raymond J. Cho, Richard O. Chen, Ted Liefeld, James Owen, Alan Ruttenberg, Christian G. Reich, Joseph Horvath, Tim Clark:
Computational knowledge integration in biopharmaceutical research. Briefings Bioinform. 4(3): 260-278 (2003) - 2000
- [j1]Tim Clark:
Virtual Private Networks with QoS. Inf. Secur. J. A Glob. Perspect. 9(2): 1-8 (2000)
Coauthor Index
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