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2020 – today
- 2023
[j19]Junhong Huang, Wu-Jian Zheng, Ping Zhang, Qiao Lin, Zhi-Rong Chen, Jia-Jia Xuan
, Chang Liu, Di Wu, Qiaojuan Huang, Ling-Ling Zheng, Shurong Liu, Keren Zhou, Liang-Hu Qu, Bin Li, Jian-Hua Yang:
ChIPBase v3.0: the encyclopedia of transcriptional regulations of non-coding RNAs and protein-coding genes. Nucleic Acids Res. 51(D1): 46-56 (2023)- [j18]Hao-Tian Lei, Zhang-Hao Wang, Bin Li, Yang Sun, Shi-Qiang Mei, Jian-Hua Yang, Liang-Hu Qu, Ling-Ling Zheng:
tModBase: deciphering the landscape of tRNA modifications and their dynamic changes from epitranscriptome data. Nucleic Acids Res. 51(D1): 315-327 (2023) - 2022
- [j17]Li Cai, Jia-Jia Xuan, Qiao Lin, Junhao Wang, Shurong Liu, Fangzhou Xie, Ling-Ling Zheng, Bin Li, Liang-Hu Qu, Jianhua Yang:
Pol3Base: a resource for decoding the interactome, expression, evolution, epitranscriptome and disease variations of Pol III-transcribed ncRNAs. Nucleic Acids Res. 50(D1): 279-286 (2022) - [j16]Jun-Hao Wang, Wen-Xin Chen, Shi-Qiang Mei, Yue-Dong Yang, Jian-Hua Yang, Liang-Hu Qu, Ling-Ling Zheng:
tsRFun: a comprehensive platform for decoding human tsRNA expression, functions and prognostic value by high-throughput small RNA-Seq and CLIP-Seq data. Nucleic Acids Res. 50(D1): 421-431 (2022) - 2021
- [j15]Ling-Ling Zheng, Jing-Hua Xiong, Wu-Jian Zheng, Jun-Hao Wang, Zi-Liang Huang, Zhi-Rong Chen, Xin-Yao Sun, Yi-Min Zheng, Keren Zhou, Bin Li, Shun Liu, Liang-Hu Qu, Jian-Hua Yang:
ColorCells: a database of expression, classification and functions of lncRNAs in single cells. Briefings Bioinform. 22(4) (2021) - [j14]Fangzhou Xie, Shurong Liu, Junhao Wang, Jia-Jia Xuan, Xiaoqin Zhang, Liang-Hu Qu, Ling-Ling Zheng, Jianhua Yang:
deepBase v3.0: expression atlas and interactive analysis of ncRNAs from thousands of deep-sequencing data. Nucleic Acids Res. 49(Database-Issue): D877-D883 (2021)
2010 – 2019
- 2018
- [j13]Liming Ma, Zirui Liang, Hui Zhou, Liang-Hu Qu:
Applications of RNA Indexes for Precision Oncology in Breast Cancer. Genom. Proteom. Bioinform. 16(2): 108-119 (2018) - [j12]Jia-Jia Xuan, Wen-Ju Sun, Peng-Hui Lin, Keren Zhou, Shun Liu, Ling-Ling Zheng, Liang-Hu Qu, Jian-Hua Yang:
RMBase v2.0: deciphering the map of RNA modifications from epitranscriptome sequencing data. Nucleic Acids Res. 46(Database-Issue): D327-D334 (2018) - [j11]Ling-Ling Zheng, Keren Zhou, Shun Liu, Ding-Yao Zhang, Ze-Lin Wang, Zhi-Rong Chen, Jian-Hua Yang, Liang-Hu Qu:
dreamBase: DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease. Nucleic Acids Res. 46(Database-Issue): D85-D91 (2018) - 2017
- [j10]Keren Zhou, Shun Liu, Wen-Ju Sun, Ling-Ling Zheng, Hui Zhou, Jian-Hua Yang, Liang-Hu Qu:
ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data. Nucleic Acids Res. 45(Database-Issue): D43-D50 (2017) - 2016
- [j9]Ling-Ling Zheng, Jun-Hao Li, Jie Wu, Wen-Ju Sun, Shun Liu, Ze-Lin Wang, Hui Zhou, Jian-Hua Yang, Liang-Hu Qu:
deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data. Nucleic Acids Res. 44(Database-Issue): 196-202 (2016) - [j8]Wen-Ju Sun, Jun-Hao Li, Shun Liu, Jie Wu, Hui Zhou, Liang-Hu Qu, Jian-Hua Yang:
RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data. Nucleic Acids Res. 44(Database-Issue): 259-265 (2016) - [j7]Ling-Ling Zheng, Wei-Lin Xu, Shun Liu, Wen-Ju Sun, Jun-Hao Li, Jie Wu, Jian-Hua Yang, Liang-Hu Qu:
tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers. Nucleic Acids Res. 44(Webserver-Issue): W185-W193 (2016) - 2015
- [j6]Shun Liu, Jun-Hao Li, Jie Wu, Keren Zhou, Hui Zhou, Jian-Hua Yang, Liang-Hu Qu:
StarScan: a web server for scanning small RNA targets from degradome sequencing data. Nucleic Acids Res. 43(Webserver-Issue): W480-W486 (2015) - 2014
- [j5]Jun-Hao Li, Shun Liu, Hui Zhou, Liang-Hu Qu, Jian-Hua Yang:
starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. Nucleic Acids Res. 42(Database-Issue): 92-97 (2014) - 2013
- [j4]Jian-Hua Yang, Jun-Hao Li, Shan Jiang, Hui Zhou, Liang-Hu Qu:
ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data. Nucleic Acids Res. 41(Database-Issue): 177-187 (2013) - 2011
- [j3]Jian-Hua Yang, Jun-Hao Li, Peng Shao, Hui Zhou, Yue-Qin Chen, Liang-Hu Qu:
starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data. Nucleic Acids Res. 39(Database-Issue): 202-209 (2011) - 2010
- [j2]Jian-Hua Yang, Peng Shao, Hui Zhou, Yue-Qin Chen, Liang-Hu Qu:
deepBase: a database for deeply annotating and mining deep sequencing data. Nucleic Acids Res. 38(Database-Issue): 123-130 (2010)
2000 – 2009
- 2003
- [j1]John W. S. Brown, Manuel Echeverria, Liang-Hu Qu, Todd M. Lowe, Jean-Pierre Bachellerie, Alexander Hüttenhofer, James P. Kastenmayer, Pamela J. Green, Paul D. Shaw, David F. Marshall:
Plant snoRNA database. Nucleic Acids Res. 31(1): 432-435 (2003)
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