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ORCIDJunichi Higo
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2020 – today
- 2021
[j19]Junichi Higo
, Hajime Takashima, Yoshifumi Fukunishi, Atsushi Yoshimori:
Generalized-ensemble method study: A helix-mimetic compound inhibits protein-protein interaction by long-range and short-range intermolecular interactions. J. Comput. Chem. 42(14): 956-969 (2021)- [j18]Kei Moritsugu, Koh Takeuchi, Narutoshi Kamiya, Junichi Higo, Isao Yasumatsu, Yoshifumi Fukunishi, Ikuo Fukuda:
Flexibility and Cell Permeability of Cyclic Ras-Inhibitor Peptides Revealed by the Coupled Nosé-Hoover Equation. J. Chem. Inf. Model. 61(4): 1921-1930 (2021) - 2020
- [j17]Junichi Higo, Takeshi Kawabata, Ayumi Kusaka, Kota Kasahara, Narutoshi Kamiya, Ikuo Fukuda, Kentaro Mori, Yutaka Hata, Yoshifumi Fukunishi, Haruki Nakamura:
Molecular Interaction Mechanism of a 14-3-3 Protein with a Phosphorylated Peptide Elucidated by Enhanced Conformational Sampling. J. Chem. Inf. Model. 60(10): 4867-4880 (2020)
2010 – 2019
- 2019
- [j16]Tomonori Hayami, Junichi Higo, Haruki Nakamura, Kota Kasahara:
Multidimensional virtual-system coupled canonical molecular dynamics to compute free-energy landscapes of peptide multimer assembly. J. Comput. Chem. 40(28): 2453-2463 (2019) - 2018
- [j15]Tomonori Hayami, Kota Kasahara, Haruki Nakamura, Junichi Higo:
Molecular dynamics coupled with a virtual system for effective conformational sampling. J. Comput. Chem. 39(19): 1291-1299 (2018) - 2016
- [j14]Shinji Iida, Tadaaki Mashimo, Takashi Kurosawa, Hironobu Hojo, Hiroya Muta, Yuji Goto, Yoshifumi Fukunishi, Haruki Nakamura, Junichi Higo:
Variation of free-energy landscape of the p53 C-terminal domain induced by acetylation: Enhanced conformational sampling. J. Comput. Chem. 37(31): 2687-2700 (2016) - 2015
- [j13]Junichi Higo, Bhaskar Dasgupta, Tadaaki Mashimo, Kota Kasahara, Yoshifumi Fukunishi, Haruki Nakamura:
Virtual-system-coupled adaptive umbrella sampling to compute free-energy landscape for flexible molecular docking. J. Comput. Chem. 36(20): 1489-1501 (2015) - [j12]Hung Nguyen, Tien Tran, Yoshifumi Fukunishi, Junichi Higo, Haruki Nakamura, Ly Le:
Computational Study of Drug Binding Affinity to Influenza A Neuraminidase Using Smooth Reaction Path Generation (SRPG) Method. J. Chem. Inf. Model. 55(9): 1936-1943 (2015) - 2011
- [j11]Jinzen Ikebe, Koji Umezawa, Narutoshi Kamiya, Takanori Sugihara, Yasushige Yonezawa, Yu Takano, Haruki Nakamura, Junichi Higo:
Theory for trivial trajectory parallelization of multicanonical molecular dynamics and application to a polypeptide in water. J. Comput. Chem. 32(7): 1286-1297 (2011)
2000 – 2009
- 2005
- [c2]Junichi Higo:
Sampling of Protein Conformations with Computers to Predict the Native Structure. ISHPC 2005: 374-382 - 2004
- [j10]Mitsunori Takano, Junichi Higo, Hironori K. Nakamura, Masaki Sasai:
On the model granularity to simulate protein dynamics: A biological physics view on biomolecular computing. Nat. Comput. 3(4): 377-393 (2004) - 2003
- [j9]Kazuyoshi Ikeda, Oxana V. Galzitskaya, Haruki Nakamura, Junichi Higo:
beta-Hairpins, alpha-helices, and the intermediates among the secondary structures in the energy landscape of a peptide from a distal beta-hairpin of SH3 domain. J. Comput. Chem. 24(3): 310-318 (2003) - [c1]Mitsunori Takano, Hironori K. Nakamura, Junichi Higo, Masaki Sasai:
Molecular dynamics simulation using coarse-grained model to study protein function and beyond. IEEE Congress on Evolutionary Computation 2003: 2719-2726 - 2002
- [j8]Satoshi Ono, Masataka Kuroda, Junichi Higo, Nobuyuki Nakajima, Haruki Nakamura:
Calibration of force-field dependency in free energy landscapes of peptide conformations by quantum chemical calculations. J. Comput. Chem. 23(4): 470-476 (2002) - [j7]Junichi Higo, Masayoshi Nakasako:
Hydration structure of human lysozyme investigated by molecular dynamics simulation and cryogenic X-ray crystal structure analyses: On the correlation between crystal water sites, solvent density, and solvent dipole. J. Comput. Chem. 23(14): 1323-1336 (2002) - 2001
- [j6]Narutoshi Kamiya, Junichi Higo:
Repeated-annealing sampling combined with multicanonical algorithm for conformational sampling of bio-molecules. J. Comput. Chem. 22(10): 1098-1106 (2001) - [j5]Junichi Higo, Yasunobu Sugimoto, Katsuzo Wakabayashi, Haruki Nakamura:
Collective motions of myosin head derived from backbone molecular dynamics and combination with X-ray solution scattering data. J. Comput. Chem. 22(16): 1983-1994 (2001) - 2000
- [j4]Satoshi Ono, Nobuyuki Nakajima, Junichi Higo, Haruki Nakamura:
Peptide free-energy profile is strongly dependent on the force field: Comparison of C96 and AMBER95. J. Comput. Chem. 21(9): 748-762 (2000)
1990 – 1999
- 1996
- [j3]Shigeru Endo, Junichi Higo, Kuniaki Nagayama, Hiroshi Wako:
New implementation of and the modeling by the extended simulated annealing process to structures of T4 lysozyme mutants at the 86th residue. J. Comput. Chem. 17(4): 476-488 (1996) - 1994
- [j2]Junichi Higo, Mariko Yamaki, Michiru Hogyoku, Takuya Takahashi, Shigeru Endo, Kuniaki Nagayama:
Stability of Two-Dimensional Crystalline Aggregates of a PRotein Studied by Molecular Dynamics. J. Comput. Chem. 15(11): 1278-1290 (1994) - [j1]Junichi Higo, Shigeru Endo, Kuniaki Nagayama, Tomoyoshi Ito, Toshiyuki Fukushige, Toshikazu Ebisuzaki, Daiichiro Sugimoto, Hiroo Miyagawa, Kunihiro Kitamura, Junichiro Makino:
Application of a High-Performance, Special-Purpose Computer, GRAPE-2A, to Molecular Dynamics. J. Comput. Chem. 15(12): 1372-1376 (1994)
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