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2020 – today
- 2024
[j18]Dharmesh D. Bhuva
, Chin Wee Tan, Ning Liu, Holly J. Whitfield, Nicholas Papachristos, Samuel C. Lee, Malvika Kharbanda, Ahmed Mohamed, Melissa J. Davis:
vissE: a versatile tool to identify and visualise higher-order molecular phenotypes from functional enrichment analysis. BMC Bioinform. 25(1): 64 (2024)- 2023
- [j17]Ahmed Mohamed, Dharmesh D. Bhuva, Sam Lee, Ning Liu, Chin Wee Tan, Melissa J. Davis:
vissE.cloud: a webserver to visualise higher order molecular phenotypes from enrichment analysis. Nucleic Acids Res. 51(W1): 593-600 (2023) - [j16]Dhananjay Kimothi, Pravesh Biyani, James M. Hogan, Melissa J. Davis:
Sequence Representations and Their Utility for Predicting Protein-Protein Interactions. IEEE ACM Trans. Comput. Biol. Bioinform. 20(1): 646-657 (2023) - 2022
- [j15]Aparna Elangovan, Yuan Li, Douglas E. V. Pires, Melissa J. Davis, Karin Verspoor:
Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT. BMC Bioinform. 23(1): 4 (2022) - [i2]Aparna Elangovan, Yuan Li, Douglas E. V. Pires, Melissa J. Davis, Karin Verspoor:
Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT. CoRR abs/2201.02229 (2022) - 2020
- [i1]Aparna Elangovan, Melissa J. Davis, Karin Verspoor:
Assigning function to protein-protein interactions: a weakly supervised BioBERT based approach using PubMed abstracts. CoRR abs/2008.08727 (2020)
2010 – 2019
- 2018
- [j14]Momeneh Foroutan, Dharmesh D. Bhuva, Ruqian Lyu, Kristy Horan, Joseph Cursons, Melissa J. Davis:
Single sample scoring of molecular phenotypes. BMC Bioinform. 19(1): 404:1-404:10 (2018) - 2015
- [j13]Anup Shah, David Chen, Akash R. Boda, Leonard J. Foster, Melissa J. Davis, Michelle M. Hill:
RaftProt: mammalian lipid raft proteome database. Nucleic Acids Res. 43(Database-Issue): 335-338 (2015) - 2014
- [j12]Stefan Maetschke, Piyush B. Madhamshettiwar, Melissa J. Davis, Mark A. Ragan:
Supervised, semi-supervised and unsupervised inference of gene regulatory networks. Briefings Bioinform. 15(2): 195-211 (2014) - [j11]Liam G. Fearnley, Melissa J. Davis, Mark A. Ragan, Lars Keld Nielsen:
Extracting reaction networks from databases-opening Pandora's box. Briefings Bioinform. 15(6): 973-983 (2014) - 2013
- [j10]Piyush B. Madhamshettiwar, Stefan Maetschke, Melissa J. Davis, Mark A. Ragan:
RMaNI: Regulatory Module Network Inference framework. BMC Bioinform. 14(S-16): S14 (2013) - 2012
- [j9]Ignacio González, Kim-Anh Lê Cao, Melissa J. Davis, Sébastien Déjean:
Visualising associations between paired 'omics' data sets. BioData Min. 5: 19 (2012) - [j8]Stefan Maetschke, Martin Simonsen, Melissa J. Davis, Mark A. Ragan:
Gene Ontology-driven inference of protein-protein interactions using inducers. Bioinform. 28(1): 69-75 (2012) - [j7]Ralph Patrick, Kim-Anh Lê Cao, Melissa J. Davis, Bostjan Kobe, Mikael Bodén:
Mapping the stabilome: a novel computational method for classifying metabolic protein stability. BMC Syst. Biol. 6: 60 (2012) - [j6]Chenwei Wang, Alperen Taciroglu, Stefan Maetschke, Colleen C. Nelson, Mark A. Ragan, Melissa J. Davis:
mCOPA: analysis of heterogeneous features in cancer expression data. J. Clin. Bioinform. 2: 22 (2012) - 2010
- [j5]Melissa J. Davis, Muhammad Shoaib B. Sehgal, Mark A. Ragan:
Automatic, context-specific generation of Gene Ontology slims. BMC Bioinform. 11: 498 (2010) - [j4]Joo-Young Choi, Melissa J. Davis, Andrew F. Newman, Mark A. Ragan:
A Semantic Web Ontology for Small Molecules and Their Biological Targets. J. Chem. Inf. Model. 50(5): 732-741 (2010)
2000 – 2009
- 2009
- [j3]Chang Shin, Simon Wong, Melissa J. Davis, Mark A. Ragan:
Protein-protein interaction as a predictor of subcellular location. BMC Syst. Biol. 3: 28 (2009) - 2008
- [c1]Melissa J. Davis, Andrew F. Newman, Imran Khan, Jane Hunter, Mark A. Ragan:
Integrating Hierarchical Controlled Vocabularies With OWL Ontology: A Case Study from the Domain of Molecular Interactions. APBC 2008: 145-154 - 2006
- [j2]Melissa J. Davis, Fasheng Zhang, Zheng Yuan, Rohan D. Teasdale:
MemO: A Consensus Approach to the Annotation of a Protein's Membrane Organization. Silico Biol. 6(5): 387-399 (2006) - [j1]J. Lynn Fink, Rajith N. Aturaliya, Melissa J. Davis, Fasheng Zhang, Kelly Hanson, Melvena S. Teasdale, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Rohan D. Teasdale:
LOCATE: a mouse protein subcellular localization database. Nucleic Acids Res. 34(Database-Issue): 213-217 (2006)
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