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ORCIDAnthony J. Kusalik
Person information
- affiliation: University of Saskatchewan, Canada
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2020 – today
- 2023
[j25]Ali Akbar Jamali
, Anthony J. Kusalik, Fang-Xiang Wu:
NMTF-DTI: A Nonnegative Matrix Tri-factorization Approach With Multiple Kernel Fusion for Drug-Target Interaction Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 20(1): 586-594 (2023)- 2021
- [j24]Zoe Parker Cates, Antonio Facciuolo, Daniel J. Hogan, Philip J. Griebel, Scott Napper, Anthony J. Kusalik:
EPIphany - A Platform for Analysis and Visualization of Peptide Immunoarray Data. Frontiers Bioinform. 1 (2021) - 2020
- [j23]Ali Akbar Jamali, Anthony J. Kusalik, Fang-Xiang Wu:
MDIPA: a microRNA-drug interaction prediction approach based on non-negative matrix factorization. Bioinform. 36(20): 5061-5067 (2020)
2010 – 2019
- 2019
- [j22]Jin-Hong Shi, Yan Yan, Matthew G. Links, Longhai Li, Jo-Anne R. Dillon, Michael Horsch, Anthony J. Kusalik:
Antimicrobial resistance genetic factor identification from whole-genome sequence data using deep feature selection. BMC Bioinform. 20-S(15): 535 (2019) - [j21]Yan Yan, Connor Burbridge, Jin-Hong Shi, Juxin Liu, Anthony J. Kusalik:
Effects of input data quantity on genome-wide association studies (GWAS). Int. J. Data Min. Bioinform. 22(1): 19-43 (2019) - [j20]Farhad Maleki, Katie L. Ovens, Daniel J. Hogan, Elham Rezaei, Alan M. Rosenberg, Anthony J. Kusalik:
Measuring consistency among gene set analysis methods: A systematic study. J. Bioinform. Comput. Biol. 17(5): 1940010:1-1940010:18 (2019) - [c30]Farhad Maleki, Katie L. Ovens, Ian McQuillan, Elham Rezaei, Alan M. Rosenberg, Anthony J. Kusalik:
Gene Set Databases: A Fountain of Knowledge or a Siren Call? BCB 2019: 269-278 - [c29]Farhad Maleki, Katie L. Ovens, Elham Rezaei, Alan M. Rosenberg, Anthony J. Kusalik:
Method Choice in Gene Set Analysis Has Important Consequences for Analysis Outcome. BIOINFORMATICS 2019: 43-54 - [c28]Farhad Maleki, Anthony J. Kusalik:
Gene Set Overlap: An Impediment to Achieving High Specificity in Over-representation Analysis. BIOINFORMATICS 2019: 182-193 - 2018
- [c27]Farhad Maleki, Katie L. Ovens, Ian McQuillan, Anthony J. Kusalik:
Sample Size and Reproducibility of Gene Set Analysis. BIBM 2018: 122-129 - [c26]Yan Yan, Connor Burbridge, Jin-Hong Shi, Juxin Liu, Anthony J. Kusalik:
Comparing Four Genome-Wide Association Study (GWAS) Programs with Varied Input Data Quantity. BIBM 2018: 1802-1809 - 2017
- [j19]Yan Yan, Anthony J. Kusalik, Fang-Xiang Wu:
NovoExD: De novo Peptide Sequencing for ETD/ECD Spectra. IEEE ACM Trans. Comput. Biol. Bioinform. 14(2): 337-344 (2017) - 2015
- [j18]Brett Trost, Scott Napper, Anthony J. Kusalik:
Case study: using sequence homology to identify putative phosphorylation sites in an evolutionarily distant species (honeybee). Briefings Bioinform. 16(5): 820-829 (2015) - 2014
- [j17]Jeffrey R. Long, Vanessa Pittet, Brett Trost, Qingxiang Yan, David Vickers, Monique Haakensen, Anthony J. Kusalik:
Equivalent input produces different output in the UniFrac significance test. BMC Bioinform. 15: 278 (2014) - [j16]Stephen Johnson, Brett Trost, Jeffrey R. Long, Vanessa Pittet, Anthony J. Kusalik:
A better sequence-read simulator program for metagenomics. BMC Bioinform. 15(S-9): S14 (2014) - [c25]Jeffrey R. Long, Qingxiang Yan, Brett Trost, Anthony J. Kusalik:
The UniFrac significance test generates different outputs given semantically equivalent inputs. BCB 2014: 589 - [c24]Yan Yan, Anthony J. Kusalik, Fang-Xiang Wu:
NovoPair: De novo peptide sequencing for tandem mass spectra pair. BIBM 2014: 150-155 - [c23]Yan Yan, Anthony J. Kusalik, Fang-Xiang Wu:
NovoGMET: De Novo Peptide Sequencing Using Graphs with Multiple Edge Types (GMET) for ETD/ECD Spectra. ISBRA 2014: 200-211 - 2013
- [j15]Brett Trost, Anthony J. Kusalik:
Computational phosphorylation site prediction in plants using random forests and organism-specific instance weights. Bioinform. 29(6): 686-694 (2013) - [j14]Brett Trost, Ryan Arsenault, Philip J. Griebel, Scott Napper, Anthony J. Kusalik:
DAPPLE: a pipeline for the homology-based prediction of phosphorylation sites. Bioinform. 29(13): 1693-1695 (2013) - [c22]Yan Yan, Anthony J. Kusalik, Fang-Xiang Wu:
A multi-edge graph based de novo peptide sequencing method for HCD spectra. BIBM 2013: 176-181 - 2011
- [j13]Brett Trost, Anthony J. Kusalik:
Computational prediction of eukaryotic phosphorylation sites. Bioinform. 27(21): 2927-2935 (2011) - 2010
- [j12]Giovanni Capone, Giuseppe Novello, Candida Fasano, Brett Trost, Mikelis G. Bickis, Anthony J. Kusalik, Darja Kanduc:
The oligodeoxynucleotide sequences corresponding to never-expressed peptide motifs are mainly located in the non-coding strand. BMC Bioinform. 11: 383 (2010)
2000 – 2009
- 2009
- [j11]Chushin Koh, Fang-Xiang Wu, Gopalan Selvaraj, Anthony J. Kusalik:
Using a State-Space Model and Location Analysis to Infer Time-Delayed Regulatory Networks. EURASIP J. Bioinform. Syst. Biol. 2009 (2009) - 2006
- [j10]Fang-Xiang Wu, Wen-Jun Zhang, Anthony J. Kusalik:
Determination of the minimum number of microarray experiments for discovery of gene expression patterns. BMC Bioinform. 7(S-4) (2006) - [j9]Chenhong Zhang, Mikelis G. Bickis, Fang-Xiang Wu, Anthony J. Kusalik:
Optimally-connected Hidden Markov Models for Predicting Mhc-binding Peptides. J. Bioinform. Comput. Biol. 4(5): 959-980 (2006) - [c21]Fang-Xiang Wu, Wen-Jun Zhang, Anthony J. Kusalik:
On Determination of Minimum Sample Size for Discovery of Temporal Gene Expression Patterns. IMSCCS (1) 2006: 96-103 - 2005
- [j8]Fang-Xiang Wu, Wen-Jun Zhang, Anthony J. Kusalik:
Dynamic Model-based Clustering for Time-course Gene Expression Data. J. Bioinform. Comput. Biol. 3(4): 821-836 (2005) - [c20]Fang-Xiang Wu, Anthony J. Kusalik, Wen-Jun Zhang:
Genetic Weighted K-means for Large-Scale Clustering Problems. FLAIRS 2005: 864-865 - 2004
- [c19]Fang-Xiang Wu, Wen-Jun Zhang, Anthony J. Kusalik:
Model-Based Clustering with Genes Expression Dynamics for Time-Course Gene Expression Data. BIBE 2004: 267-274 - [c18]Fang-Xiang Wu, Wen-Jun Zhang, Anthony J. Kusalik:
State-Space Model for Gene Regulatory Networks with Time Delays. CSB 2004: 454-455 - [c17]Fang-Xiang Wu, Anthony J. Kusalik, Wen-Jun Zhang:
A. Genetic Algorithm for Inferring Time Delays in Gene Regulatory Networks. CSB 2004: 610-611 - [c16]Fang-Xiang Wu, Wen-Jun Zhang, Anthony J. Kusalik:
Modeling Gene Expression from Microarray Expression Data with State-Space Equations. Pacific Symposium on Biocomputing 2004: 581-592 - 2003
- [c15]Fang-Xiang Wu, Wen-Jun Zhang, Anthony J. Kusalik:
A Genetic K-means Clustering Algorithm Applied to Gene Expression Data. AI 2003: 520-526 - [c14]Fang-Xiang Wu, Wen-Jun Zhang, Anthony J. Kusalik:
An Algorithm to Reconstruct a Target DNA Sequence from Its Spectrum Connected at a Given Level. BIBE 2003: 201-205 - [c13]Fang-Xiang Wu, Wen-Jun Zhang, Anthony J. Kusalik:
Determination of the Minimum Sample Size in Microarray Experiments to Cluster Genes Using K-means Clustering. BIBE 2003: 401-406 - 2001
- [e5]Anthony J. Kusalik:
Proceedings of the Eleventh Workshop on Logic Programming Environments (WLPE'01), Paphos, Cyprus, December 1, 2001. 2001 [contents] - [i1]Anthony J. Kusalik:
Proceedings of the Eleventh Workshop on Logic Programming Environments (WLPE'01). CoRR cs.PL/0111042 (2001) - 2000
- [j7]Alpesh Patel, Anthony J. Kusalik, Carl McCrosky:
Area-Efficient VLSI Layouts for Binary Hypercubes. IEEE Trans. Computers 49(2): 160-169 (2000)
1990 – 1999
- 1999
- [c12]Mohammad Ashrafuzzaman, Anthony J. Kusalik:
An Implementation Architecture for Orthogonally Persistent Deductive Object-Oriented Database Systems. IDEAS 1999: 424-432 - [c11]Mireille Ducassé, Anthony J. Kusalik, Germán Puebla:
Preface. WLPE@ICLP 1999: 197 - [e4]Mireille Ducassé, Anthony J. Kusalik, Germán Puebla:
Tenth Workshop on Logic Programming Environments, WLPE 1999, in connection with the International Conference on Logic Programming, ICLP 1999, Las Cruces, New Mexico, USA, Nobember 29, 1999. Electronic Notes in Theoretical Computer Science 30(4), Elsevier 1999 [contents] - 1998
- [j6]Gregory M. Oster, Anthony J. Kusalik:
Icola - Incremental Constraint-Based Graphics for Visualization. Constraints An Int. J. 3(1): 33-59 (1998) - 1997
- [j5]Ahmad Ghazanfari, Anthony J. Kusalik, Joseph Irudayaraj:
Application of a Multi-Structure Neural Network (MSNN) to Sorting Pistachio Nuts. Int. J. Neural Syst. 8(1): 55-61 (1997) - [c10]Eric Neufeld, Anthony J. Kusalik, Michael Dobrohoczki:
Visual Metaphors fro Understanding Logic Program Execution. Graphics Interface 1997: 114-120 - [c9]Anthony J. Kusalik, Eric Neufeld:
Resolving Color Conflicts During Color Unification. LPE 1997: 22-32 - [e3]Anthony J. Kusalik, Mireille Ducassé, Ulrich Neumerkel:
Proceedings of the 8th Workshop on Logic Programming Environments, LPE '97, post-conference workshop at ICLP 1997, Leuven, Belgium, July 11, 1997. 1997 [contents] - 1996
- [c8]Anthony J. Kusalik, Steven D. Prestwich:
Visualizing Parallel Logic Program Execution for Performance Tuning. JICSLP 1996: 498-512 - [c7]Michael Dobrohoczki, Anthony J. Kusalik, Eric Neufeld:
Colour Tagging for Prolog Visualization (Poster Abstract). JICSLP 1996: 548 - 1995
- [e2]Markus P. J. Fromherz, Marc Kirschenbaum, Anthony J. Kusalik:
Proceedings of the 7th Workshop on Logic Programming Environments, LPR '95, in conjunction with ILPS '95, Portland, Oregon, USA, December 8, 1995. 1995 [contents] - 1994
- [c6]Steven D. Prestwich, Anthony J. Kusalik:
High-Level Visualisation of Parallel Logic Program Execution. PARLE 1994: 180-191 - 1993
- [c5]Anthony J. Kusalik, Gregory M. Oster:
Towards Generalized Visualization Support for Logic Programming. ICLP 1993: 844 - [c4]Anthony J. Kusalik, Gregory M. Oster:
A Constraint-Based Declarative Display Description Language for Visualization. LPE 1993: 59-67 - [c3]Anthony J. Kusalik, Steven D. Prestwich:
Programmer-Oriented Visualization of Parallel Logic Program Execution. LPE 1993: 69-74 - 1990
- [j4]Anthony J. Kusalik:
Secondary storage in a concurrent logic programming environment. J. Syst. Softw. 11(1): 31-44 (1990) - [e1]Mireille Ducassé, Anna-Maria Emde, Anthony J. Kusalik, Jacob Levy:
Proceedings of the ICLP 1990 Workshop on Logic Programming Environments, Eilat, Israel, June 16, 1990. Technical Report, ECRC IR-LP-31-25. 1990 [contents]
1980 – 1989
- 1988
- [c2]Carl McCrosky, Anthony J. Kusalik:
Improving First-Class Array Expressions Using Prolog. ICLP/SLP 1988: 18-25 - 1986
- [j3]Anthony J. Kusalik:
Specification and Initialization of a Logic Computer System. New Gener. Comput. 4(2): 189-209 (1986) - [c1]Ian T. Foster, Anthony J. Kusalik:
A Logical Treatment of Secondary Storage. SLP 1986: 58-67 - 1984
- [j2]Anthony J. Kusalik:
Bounded-Wait Merge in Shapiro's Concurrent Prolog. New Gener. Comput. 2(2): 157-169 (1984) - [j1]Anthony J. Kusalik:
Serialization of Process Reduction in Concurrent Prolog. New Gener. Comput. 2(3): 289-298 (1984)
Coauthor Index
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