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ORCIDNucleic Acids Research, Volume 30
Volume 30, Number 1, January 2002
- Andreas D. Baxevanis:
The Molecular Biology Database Collection: 2002 update. 1-12 - David L. Wheeler, Deanna M. Church, Alex E. Lash, Detlef D. Leipe, Thomas L. Madden, Joan U. Pontius, Gregory D. Schuler, Lynn M. Schriml, Tatiana A. Tatusova, Lukas Wagner, Barbara A. Rapp:
Database resources of the National Center for Biotechnology Information: 2002 update. 13-16 - Dennis A. Benson, Ilene Karsch-Mizrachi
, David J. Lipman, James Ostell, Barbara A. Rapp, David L. Wheeler:
GenBank. 17-20 - Guenter Stoesser, Wendy Baker, Alexandra van den Broek, Evelyn Camon, Maria Garcia-Pastor, Carola Kanz, Tamara Kulikova, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Nicole Redaschi, Peter Stoehr, Mary Ann Tuli, Katerina Tzouvara, Robert Vaughan:
The EMBL Nucleotide Sequence Database. 21-26 - Yoshio Tateno, Tadashi Imanishi, Satoru Miyazaki, Kaoru Fukami-Kobayashi, Naruya Saitou, Hideaki Sugawara, Takashi Gojobori:
DNA Data Bank of Japan (DDBJ) for genome scale research in life science. 27-30 - Hans-Werner Mewes, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Mokrejs, Burkhard Morgenstern, Martin Münsterkötter, Stephen Rudd, B. Weil:
MIPS: a database for genomes and protein sequences. 31-34 - Cathy H. Wu, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Robert S. Ledley, Kali C. Lewis, Hans-Werner Mewes, Bruce C. Orcutt, Baris E. Suzek, Akira Tsugita, Cholanayakanahalli R. Vinayaka, Lai-Su L. Yeh, Jian Zhang, Winona C. Barker:
The Protein Information Resource: an integrated public resource of functional annotation of proteins. 35-37 - Tim J. P. Hubbard, Daniel Barker, Ewan Birney, Graham Cameron, Yuan Chen, Laura Clarke, Tony Cox, James A. Cuff, Val Curwen, Thomas A. Down, Richard Durbin, Eduardo Eyras, James G. R. Gilbert, Martin Hammond, Lukasz Huminiecki, Arek Kasprzyk, Heikki Lehväslaiho, Philip Lijnzaad, Craig Melsopp, Emmanuel Mongin, Roger Pettett, Matthew R. Pocock, Simon C. Potter, Alistair G. Rust, Esther Schmidt, Stephen M. J. Searle, Guy Slater, James A. Smith, William Spooner, Arne Stabenau, Jim Stalker, Elia Stupka, Abel Ureta-Vidal, Imre Vastrik, Michele E. Clamp:
The Ensembl genome database project. 38-41 - Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Akihiro Nakaya:
The KEGG databases at GenomeNet. 42-46 - Ida Schomburg, Antje Chang, Dietmar Schomburg:
BRENDA, enzyme data and metabolic information. 47-49 - Björn M. Ursing, Frank H. J. van Enckevort, Jack A. M. Leunissen, Roland J. Siezen:
EXProt: a database for proteins with an experimentally verified function. 50-51 - Ada Hamosh, Alan F. Scott, Joanna S. Amberger, Carol A. Bocchini, David Valle, Victor A. McKusick:
Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders. 52-55 - Peter D. Karp, Monica Riley, Milton H. Saier Jr., Ian T. Paulsen, Julio Collado-Vides, Suzanne M. Paley, Alida Pellegrini-Toole, César Bonavides-Martínez, Socorro Gama-Castro:
The EcoCyc Database. 56-58 - Peter D. Karp, Monica Riley, Suzanne M. Paley, Alida Pellegrini-Toole:
The MetaCyc Database. 59-61 - Ivan Moszer, Louis M. Jones, Sandrine Moreira, Cécilia Fabry, Antoine Danchin:
SubtiList: the reference database for the Bacillus subtilis genome. 62-65 - Masaki Fumoto, Satoru Miyazaki, Hideaki Sugawara:
Genome Information Broker (GIB): data retrieval and comparative analysis system for completed microbial genomes and more. 66-68 - Selina S. Dwight, Midori A. Harris, Kara Dolinski, Catherine A. Ball, Gail Binkley, Karen R. Christie, Dianna G. Fisk, Laurie Issel-Tarver, Mark Schroeder, Gavin Sherlock, Anand Sethuraman, Shuai Weng, David Botstein, J. Michael Cherry:
Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO). 69-72 - Anuj Kumar, Kei-Hoi Cheung, Nick P. Tosches, Peter Masiar, Yang Liu, Perry L. Miller, Michael Snyder:
The TRIPLES database: a community resource for yeast molecular biology. 73-75 - Stéphane Le Crom, Frédéric Devaux, Claude Jacq, Philippe Marc:
yMGV: helping biologists with yeast microarray data mining. 76-79 - Georg Habeler, Klaus Natter, Gerhard G. Thallinger, Matthew E. Crawford, Sepp D. Kohlwein, Zlatko Trajanoski:
YPL.db: the Yeast Protein Localization database. 80-83 - Lisa Kreppel, Alan R. Kimmel:
Genomic database resources for Dictyostelium discoideum. 84-86 - Amit Bahl, Brian P. Brunk, Ross L. Coppel, Jonathan Crabtree, Sharon J. Diskin, Martin J. Fraunholz, Gregory R. Grant, Dinesh Gupta, Robert L. Huestis, Jessica C. Kissinger, Philip Labo, Li Li, Shannon K. McWeeney, Arthur J. Milgram, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr.:
PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished). 87-90 - Heiko Schoof, Paolo Zaccaria, Heidrun Gundlach, Kai Lemcke, Stephen Rudd, Grigory Kolesov, Roland Arnold, Hans-Werner Mewes, Klaus F. X. Mayer:
MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome. 91-93 - Franck Samson, Véronique Brunaud, Sandrine Balzergue, B. Dubreucq, L. Lepiniec, G. Pelletier, Michel Caboche, Alain Lecharny:
FLAGdb/FST: a database of mapped flanking insertion sites (FSTs) of Arabidopsis thaliana T-DNA transformants. 94-97 - Katsumi Sakata, Yoshiaki Nagamura, Hisataka Numa, Baltazar A. Antonio, Hideki Nagasaki, Atsuko Idonuma, Wakako Watanabe, Yuji Shimizu, Ikuo Horiuchi, Takashi Matsumoto, Takuji Sasaki, Kenichi Higo:
RiceGAAS: an automated annotation system and database for rice genome sequence. 98-102 - Doreen Ware, Pankaj Jaiswal, Junjian Ni, Xiaokang Pan, Kuan Y. Chang, Kenneth Clark, Leonid Teytelman, Steven Schmidt, Wei Zhao, Samuel Cartinhour, Susan McCouch, Lincoln Stein:
Gramene: a resource for comparative grass genomics. 103-105 - Yves Van de Peer, John Shawe-Taylor, Jayabalan Joseph, Axel Meyer:
Wanda: a database of duplicated fish genes. 109-112 - Judith A. Blake, Joel E. Richardson, Carol J. Bult, James A. Kadin, Janan T. Eppig:
The Mouse Genome Database (MGD): the model organism database for the laboratory mouse. 113-115 - Hidemasa Bono, Takeya Kasukawa, Masaaki Furuno, Yoshihide Hayashizaki, Yasushi Okazaki:
FANTOM DB: database of Functional Annotation of RIKEN Mouse cDNA Clones. 116-118 - Takeshi Kawashima, Shuichi Kawashima, Yuji Kohara, Minoru Kanehisa, Kazuhiro W. Makabe:
Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags. 119-120 - Stanton L. Martin, Barbara P. Blackmon, Ravi Rajagopalan, Thomas D. Houfek, Robert G. Sceeles, Sheila O. Denn, Thomas K. Mitchell, Douglas E. Brown, Rod A. Wing, Ralph A. Dean:
MagnaportheDB: a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea. 121-124 - Simon N. Twigger, Jian Lu, Mary Shimoyama, Dan Chen, Dean Pasko, Hanping Long, Jessica Ginster, Chin-Fu Chen, Rajni Nigam, Anne E. Kwitek, Janan T. Eppig, Lois Maltais, Donna R. Maglott, Gregory D. Schuler, Howard J. Jacob, Peter J. Tonellato:
Rat Genome Database (RGD): mapping disease onto the genome. 125-128 - Anthony R. Kerlavage, Vivien Bonazzi, Matteo di Tommaso, Charles Lawrence, Peter Li, Frank Mayberry, Richard J. Mural, Marc Nodell, Mark Yandell, Jinghui Zhang, Paul D. Thomas:
The Celera Discovery SystemTM. 129-136 - Peter E. Hodges, Pauline M. Carrico, Jennifer D. Hogan, Kathy E. O'Neill, J. J. Owen, Mary E. Mangan, Brian P. Davis, Joan E. Brooks, James I. Garrels:
Annotating the human proteome: the Human Proteome Survey Database (HumanPSDTM) and an in-depth target database for G protein-coupled receptors (GPCR-PDTM) from Incyte Genomics. 137-141 - Claude-Alain H. Roten, Patrick Gamba, Jean-Luc Barblan, Dimitri Karamata:
Comparative Genometrics (CG): a database dedicated to biometric comparisons of whole genomes. 142-144 - Donald G. Gilbert:
euGenes: a eukaryote genome information system. 145-148 - Samson Chien, Lawrence T. Reiter, Ethan Bier, Michael Gribskov:
Homophila: human disease gene cognates in Drosophila. 149-151 - Mika Hirakawa:
HOWDY: an integrated database system for human genome research. 152-157 - Mika Hirakawa, Toshihiro Tanaka, Yoichi Hashimoto, Masako Kuroda, Toshihisa Takagi, Yusuke Nakamura:
JSNP: a database of common gene variations in the Japanese population. 158-162 - Micheal Hewett, Diane E. Oliver, Daniel L. Rubin, Katrina L. Easton, Joshua M. Stuart, Russ B. Altman, Teri E. Klein:
PharmGKB: the Pharmacogenetics Knowledge Base. 163-165 - Reiko Kikuno, Takahiro Nagase, Mina Waki, Osamu Ohara:
HUGE: a database for human large proteins identified in the Kazusa cDNA sequencing project. 166-168 - Hester M. Wain, Michael J. Lush, Fabrice Ducluzeau, Sue Povey:
Genew: the Human Gene Nomenclature Database. 169-171 - Marcella Attimonelli, Domenico Catalano, Carmela Gissi, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Monica Santamaria, Graziano Pesole, Cecilia Saccone:
MitoNuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002. 172-173 - Cecilia Lanave, Flavio Licciulli, Mariateresa De Robertis, Alessandra Marolla, Marcella Attimonelli:
Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences. 174-175 - Maciej Szymanski, Miroslawa Z. Barciszewska, Volker A. Erdmann, Jan Barciszewski:
5S Ribosomal RNA Database. 176-178 - Kelly P. Williams:
The tmRNA Website: invasion by an intron. 179-182 - Jan Wuyts, Yves Van de Peer, Tina Winkelmans, Rupert De Wachter:
The European database on small subunit ribosomal RNA. 183-185 - Yen-Hua Huang, Yu-Tin Chen, Jiunn-Jei Lai, S.-T. Yang, Ueng-Cheng Yang:
PALS db: Putative Alternative Splicing database. 186-190 - Meena K. Sakharkar, F. Passetti, Jorge Estefano de Souza, Manyuan Long, Sandro J. de Souza:
ExInt: an Exon Intron Database. 191-194 - Julia V. Ponomarenko, Galina Orlova, Anatoly S. Frolov, Mikhail S. Gelfand, Mikhail P. Ponomarenko:
SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data. 195-199 - Vadim P. Valuev, Dmitry A. Afonnikov, Mikhail P. Ponomarenko, Luciano Milanesi, Nikolay A. Kolchanov:
ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro. 200-202 - Kenji Onodera, Ulrich Melcher:
VirOligo: a database of virus-specific oligonucleotides. 203-204 - Jan Paces, Adam Pavlícek, Václav Paces:
HERVd: database of human endogenous retroviruses. 205-206 - Ron Edgar, Michael Domrachev, Alex E. Lash:
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. 207-210 - Hidemasa Bono, Takeya Kasukawa, Yoshihide Hayashizaki, Yasushi Okazaki:
READ: RIKEN Expression Array Database. 211-213 - Peter M. Haverty, Zhiping Weng, Nathan L. Best, Kenneth R. Auerbach, Li-Li Hsiao, Roderick V. Jensen, Steven R. Gullans:
HugeIndex: a database with visualization tools for high-density oligonucleotide array data from normal human tissues. 214-217 - Peter S. Nelson, Colin C. Pritchard, Denise Abbott, Nigel Clegg:
The human (PEDB) and mouse (mPEDB) Prostate Expression Databases. 218-220 - Toshihiko Honkura, Jun Ogasawara, Tomoyuki Yamada, Shinichi Morishita:
The Gene Resource Locator: gene locus maps for transcriptome analysis. 221-225 - Christian Schönbach, Judice L. Y. Koh, Darren R. Flower, Limsoon Wong, Vladimir Brusic:
FIMM, a database of functional molecular immunology: update 2002. 226-229 - Jean-Marie Buerstedde, Hiroshi Arakawa, Akira Watahiki, Piero Carninci, Yoshihide Hayashizaki, Bernhard Korn, Jiri Plachy:
The DT40 web site: sampling and connecting the genes of a B cell line. 230-231 - Jouni Väliaho, Marianne Pusa, Tuomo Ylinen, Mauno Vihinen:
IDR: the ImmunoDeficiency Resource. 232-234 - Laurent Falquet, Marco Pagni, Philipp Bucher, Nicolas Hulo, Christian J. A. Sigrist, Kay Hofmann, Amos Bairoch:
The PROSITE database, its status in 2002. 235-238 - Terri K. Attwood, Martin J. Blythe, Darren R. Flower, Anna Gaulton, J. E. Mabey, Neil Maudling, L. McGregor, Alex L. Mitchell, G. Moulton, K. Paine, Philip Scordis:
PRINTS and PRINTS-S shed light on protein ancestry. 239-241 - Ivica Letunic, Leo Goodstadt, Nicholas J. Dickens, Tobias Doerks, Jörg Schultz, Richard Mott, Francesca D. Ciccarelli, Richard R. Copley, Chris P. Ponting, Peer Bork:
Recent improvements to the SMART domain-based sequence annotation resource. 242-244 - John D. Westbrook, Zukang Feng, Shri Jain, T. N. Bhat, Narmada Thanki, Veerasamy Ravichandran, Gary Gilliland, Wolfgang Bluhm, Helge Weissig, Douglas S. Greer, Philip E. Bourne, Helen M. Berman:
The Protein Data Bank: unifying the archive. 245-248 - Yanli Wang, John B. Anderson, Jie Chen, Lewis Y. Geer, Siqian He, David I. Hurwitz, Cynthia A. Liebert, Thomas Madej, Gabriele H. Marchler, Aron Marchler-Bauer, Anna R. Panchenko, Benjamin A. Shoemaker, James S. Song, Paul A. Thiessen, Roxanne A. Yamashita, Stephen H. Bryant:
MMDB: Entrez's 3D-structure database. 249-252 - Jan Reichert, Jürgen Sühnel:
The IMB Jena Image Library of Biological Macromolecules: 2002 update. 253-254 - Ursula Pieper, Narayanan Eswar, Ashley C. Stuart, Valentin A. Ilyin, Andrej Sali:
MODBASE, a database of annotated comparative protein structure models. 255-259 - John-Marc Chandonia, Nigel S. Walker, Loredana Lo Conte, Patrice Koehl, Michael Levitt, Steven E. Brenner:
ASTRAL compendium enhancements. 260-263 - Loredana Lo Conte, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin:
SCOP database in 2002: refinements accommodate structural genomics. 264-267 - Julian Gough, Cyrus Chothia:
SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments. 268-272 - Kristian Vlahovicek, János Murvai, Endre Barta, Sándor Pongor:
The SBASE protein domain library, release 9.0: an online resource for protein domain identification. 273-275 - Alex Bateman, Ewan Birney, Lorenzo Cerutti, Richard Durbin, Laurence Ettwiller, Sean R. Eddy, Sam Griffiths-Jones, Kevin L. Howe, Mhairi Marshall, Erik L. L. Sonnhammer:
The Pfam Protein Families Database. 276-280 - Aron Marchler-Bauer, Anna R. Panchenko, Benjamin A. Shoemaker, Paul A. Thiessen, Lewis Y. Geer, Stephen H. Bryant:
CDD: a database of conserved domain alignments with links to domain three-dimensional structure. 281-283 - V. Mallika, Anirban Bhaduri, Ramanathan Sowdhamini:
PASS2: a semi-automated database of Protein Alignments Organised as Structural Superfamilies. 284-288 - Shashi B. Pandit, Dilip Gosar, S. Abhiman, S. Sujatha, Sayali S. Dixit, Natasha S. Mhatre, Ramanathan Sowdhamini, Narayanaswamy Srinivasan:
SUPFAM - a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes. 289-293 - Takeshi Kawabata, Satoshi Fukuchi, Keiichi Homma, Motonori Ota, Jiro Araki, Takehiko Ito, Nobuyuki Ichiyoshi, Ken Nishikawa:
GTOP: a database of protein structures predicted from genome sequences. 294-298 - Antje Krause, Stefan A. Haas, Eivind Coward, Martin Vingron:
SYSTERS, GeneNest, SpliceNest: exploring sequence space from genome to protein. 299-300 - M. Michael Gromiha, Hatsuho Uedaira, Jianghong An, Samuel Selvaraj, Ponraj Prabakaran, Akinori Sarai:
ProTherm, Thermodynamic Database for Proteins and Mutants: developments in version 3.0. 301-302 - Ioannis Xenarios, Lukasz Salwínski, Xiaoqun Joyce Duan, Patrick Higney, Sul-Min Kim, David S. Eisenberg:
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. 303-305 - Joseph C. Mellor, Itai Yanai, Karl H. Clodfelter, Julian Mintseris, Charles DeLisi:
Predictome: a database of putative functional links between proteins. 306-309 - Grant H. Jacobs, Oliver Rackham, Peter A. Stockwell, Warren Tate, Chris M. Brown:
Transterm: a database of mRNAs and translational control elements. 310-311 - Nikolay A. Kolchanov, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, Irina L. Stepanenko, Tatyana I. Merkulova, Mikhail A. Pozdnyakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, Aida G. Romashchenko:
Transcription Regulatory Regions Database (TRRD): its status in 2002. 312-317 - Raquel Tobes, Juan L. Ramos:
AraC-XylS database: a family of positive transcriptional regulators in bacteria. 318-321 - Viviane Praz, Rouaïda Périer, Claude Bonnard, Philipp Bucher:
The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data. 322-324 - Magali Lescot, Patrice Déhais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouzé, Stephane Rombauts:
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. 325-327 - Yutaka Suzuki, Riu Yamashita, Kenta Nakai, Sumio Sugano:
DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs. 328-331 - Olga V. Kel-Margoulis, Alexander E. Kel, Ingmar Reuter, Igor Deineko, Edgar Wingender:
TRANSCompel®: a database on composite regulatory elements in eukaryotic genes. 332-334 - Graziano Pesole, Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Flavio Mignone, Carmela Gissi, Cecilia Saccone:
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002. 335-340 - Steven A. Sullivan, Daniel W. Sink, Kenneth L. Trout, Izabela Makalowska, Patrick M. Taylor, Andreas D. Baxevanis, David Landsman:
The Histone Database. 341-342 - Neil D. Rawlings, Emmet A. O'Brien, Alan J. Barrett:
MEROPS: the protease database. 343-346 - Francesca De Leo, Mariateresa Volpicella, Flavio Licciulli, Sabino Liuni, Raffaele Gallerani, Luigi R. Ceci:
PLANT-PIs: a database for plant protease inhibitors and their genes. 347-348 - Natalia Maltsev, Elizabeth Marland, Gong-Xin Yu, Saurabha Bhatnagar, Richard W. Lusk:
Sentra, a database of signal transduction proteins. 349-350 - Alexander V. Spirov, Mikhail Borovsky, Olesya A. Spirova:
HOX Pro DB: the functional genomics of hox ensembles. 351-353 - Chiquito J. Crasto, Luis N. Marenco, Perry L. Miller, Gordon M. Shepherd:
Olfactory Receptor Database: a metadata-driven automated population from sources of gene and protein sequences. 354-360 - Øyvind Edvardsen, Anne Lise Reiersen, Margot W. Beukers, Kurt Kristiansen:
tGRAP, the G-protein coupled receptors mutant database. 361-363 - Jorge Duarte, Guy Perrière, Vincent Laudet, Marc Robinson-Rechavi:
NUREBASE: database of nuclear hormone receptors. 364-368 - Tae-Kwon Sohn, Eun-Joung Moon, Seok-Ki Lee, Hwan-Gue Cho, Kyu-Won Kim:
AngioDB: database of angiogenesis and angiogenesis-related molecules. 369-371 - Ines Liebich, Jürgen Bode, Matthias Frisch, Edgar Wingender:
S/MARt DB: a database on scaffold/matrix attached regions. 372-374 - Michael H. W. Weber, Ingo Fricke, Niclas Doll, Mohamed A. Marahiel:
CSDBase: an interactive database for cold shock domain-containing proteins and the bacterial cold shock response. 375-378 - Jesus M. Castagnetto, Sean W. Hennessy, Victoria A. Roberts, Elizabeth D. Getzoff, John A. Tainer, Michael E. Pique:
MDB: the Metalloprotein Database and Browser at The Scripps Research Institute. 379-382 - Francine B. Perler:
InBase: the Intein Database. 383-384 - Fei Li, David L. Herrin:
FUGOID: functional genomics of organellar introns database. 385-386 - D. Fredman, Marianne Siegfried, Yan P. Yuan, Peer Bork, Heikki Lehväslaiho, Anthony J. Brookes:
HGVbase: a human sequence variation database emphasizing data quality and a broad spectrum of data sources. 387-391 - Peter S. Klosterman, Makio Tamura, Stephen R. Holbrook, Steven E. Brenner:
SCOR: a Structural Classification of RNA database. 392-394 - Uma Nagaswamy, Maia Larios-Sanz, James Hury, Shakaala Collins, Zhengdong Zhang, Qin Zhao, George E. Fox:
NCIR: a database of non-canonical interactions in known RNA structures. 395-397 - Elena A. Ananko, Nikolay L. Podkolodny, Irina L. Stepanenko, Elena V. Ignatieva, Olga A. Podkolodnaya, Nikolay A. Kolchanov:
GeneNet: a database on structure and functional organisation of gene networks. 398-401 - Susumu Goto, Yasushi Okuno, Masahiro Hattori, Takaaki Nishioka, Minoru Kanehisa:
LIGAND: database of chemical compounds and reactions in biological pathways. 402-404 - Alexander Loß, Peter Bunsmann, Andreas Bohne, Annika Loß, Eberhard Schwarzer, Elke Lang, Claus-Wilhelm von der Lieth:
SWEET-DB: an attempt to create annotated data collections for carbohydrates. 405-408 - Wilfred W. Li, Boojala V. B. Reddy, John G. Tate, Ilya N. Shindyalov, Philip E. Bourne:
CKAAPs DB: a Conserved Key Amino Acid Positions DataBase. 409-411 - X. Chen, Zhi Liang Ji, Yuzong Chen:
TTD: Therapeutic Target Database. 412-415 - Dag Harmsen, Jörg Rothgänger, Matthias Frosch, Jürgen Albert:
RIDOM: Ribosomal Differentiation of Medical Micro-organisms Database. 416-417
Volume 30, Number 13, July 2002
- Perry M. Kim, Kimberly S. Paffett, Jachen A. Solinger, Wolf-Dietrich Heyer, Jac A. Nickoloff:
Spontaneous and double-strand break-induced recombination, and gene conversion tract lengths, are differentially affected by overexpression of wild-type or ATPase-defective yeast Rad54. 2727-2735 - Duyen T. Dang, Weidong Zhao, Channing S. Mahatan, Deborah E. Geiman, Vincent W. Yang:
Opposing effects of Krüppel-like factor 4 (gut-enriched Krüppel-like factor) and Krüppel-like factor 5 (intestinal-enriched Krüppel-like factor) on the promoter of the Krüppel-like factor 4 gene. 2736-2741 - Li Liu, Shuqiu Cheng, Anja J. van Brabant, Eric B. Kmiec:
Rad51p and Rad54p, but not Rad52p, elevate gene repair in Saccharomyces cerevisiae directed by modified single-stranded oligonucleotide vectors. 2742-2750 - Dorte Renneberg, Emilie Bouliong, Ulrich Reber, Daniel Schümperli, Christian J. Leumann:
Antisense properties of tricyclo-DNA. 2751-2757 - Liya Gu, Jianxin Wu, Bei-Bei Zhu, Guo-Min Li:
Deficiency of a novel mismatch repair activity in a bladder tumor cell line. 2758-2763 - Andreas W. Rüfer, Brian Sauer:
Non-contact positions impose site selectivity on Cre recombinase. 2764-2771 - Deborah B. Schulman, David R. Setzer:
Identification and characterization of transcription factor IIIA from Schizosaccharomyces pombe. 2772-2781 - Christopher J. Nulf, David R. Corey:
DNA assembly using bis-peptide nucleic acids (bisPNAs). 2782-2789 - Melanie P. Gygi, Mark D. Ferguson, Heather C. Mefford, Kevin P. Lund, Christine O'Day, Peiwen Zhou, Cynthia Friedman, Ger van den Engh, Mark L. Stolowitz, Barbara J. Trask:
Use of fluorescent sequence-specific polyamides to discriminate human chromosomes by microscopy and flow cytometry. 2790-2799 - Alexandros G. Georgakilas, Paula V. Bennett, Betsy M. Sutherland:
High efficiency detection of bi-stranded abasic clusters in -irradiated DNA by putrescine. 2800-2808 - Esther E. Biswas, Pei-Hua Chen, Subhasis B. Biswas:
Modulation of enzymatic activities of Escherichia coli DnaB helicase by single-stranded DNA-binding proteins. 2809-2816 - Maria A. Graziewicz, Brian J. Day, William C. Copeland:
The mitochondrial DNA polymerase as a target of oxidative damage. 2817-2824 - Mark P. McPike, Julie M. Sullivan, Jerry Goodisman, James C. Dabrowiak:
Footprinting, circular dichroism and UV melting studies on neomycin B binding to the packaging region of human immunodeficiency virus type-1 RNA. 2825-2831 - Ioannis Amarantos, Ioannis K. Zarkadis, Dimitrios L. Kalpaxis:
The identification of spermine binding sites in 16S rRNA allows interpretation of the spermine effect on ribosomal 30S subunit functions. 2832-2843 - Christine Mayer, Uttam L. RajBhandary:
Conformational change of Escherichia coli initiator methionyl-tRNAfMet upon binding to methionyl-tRNA formyl transferase. 2844-2850 - Kazuko Shiroki, Chieko Ohsawa, Natuki Sugi, Motoaki Wakiyama, Kin-ichiro Miura, Manabu Watanabe, Yutaka Suzuki, Sumio Sugano:
Internal ribosome entry site-mediated translation of Smad5 in vivo: requirement for a nuclear event. 2851-2861 - Chao Wei, Rose Skopp, Minoru Takata, Shunichi Takeda, Carolyn M. Price:
Effects of double-strand break repair proteins on vertebrate telomere structure. 2862-2870 - Cristian Cañestro, Roser Gonzàlez-Duarte, Ricard Albalat:
Minisatellite instability at the Adh locus reveals somatic polymorphism in amphioxus. 2871-2876 - Patrick J. Finn, Lei Sun, Satyam Nampalli, Haiguang Xiao, John R. Nelson, J. Anthony Mamone, Greg Grossmann, Parke K. Flick, Carl W. Fuller, Shiv Kumar:
Synthesis and application of charge-modified dye-labeled dideoxynucleoside-5'-triphosphates to ?direct-load? DNA sequencing. 2877-2885 - Chiara Sabatti, Lars Rohlin, Min-Kyu Oh, James C. Liao:
Co-expression pattern from DNA microarray experiments as a tool for operon prediction. 2886-2893 - Kristyna Stehlikova, Hana Kostrhunova, Jana Kasparkova, Viktor Brabec:
DNA bending and unwinding due to the major 1, 2-GG intrastrand cross-link formed by antitumor cis-diamminedichloroplatinum(II) are flanking-base independent. 2894-2898 - Imre Cserpán, Róbert Katona, Tünde Praznovszky, Edit Novák, Márta Rózsavölgyi, Erika Csonka, Mónika Mórocz, Katalin Fodor, Gyula Hadlaczky:
The chAB4 and NF1-related long-range multisequence DNA families are contiguous in the centromeric heterochromatin of several human chromosomes. 2899-2905 - Ippeita Dan, Norinobu M. Watanabe, Eriko Kajikawa, Takafumi Ishida, Akhilesh Pandey, Akihiro Kusumi:
Overlapping of MINK and CHRNE gene loci in the course of mammalian evolution. 2906-2910 - Juliet M. Daniel, Christopher M. Spring, Howard C. Crawford, Albert B. Reynolds, Akeel Baig:
The p120ctn-binding partner Kaiso is a bi-modal DNA-binding protein that recognizes both a sequence-specific consensus and methylated CpG dinucleotides. 2911-2919 - Kerby Shedden, Stephen Cooper:
Analysis of cell-cycle gene expression in Saccharomyces cerevisiae using microarrays and multiple synchronization methods. 2920-2929 - Ying Chen, Rajiv P. Sharma, Robert H. Costa, Erminio Costa, Dennis R. Grayson:
On the epigenetic regulation of the human reelin promoter. 2930-2939 - Subhra Chakraborty, Bhaskarjyoti Sarmah, Niranjan Chakraborty, Asis Datta:
Premature termination of RNA polymerase II mediated transcription of a seed protein gene in Schizosaccharomyces pombe. 2940-2949 - Franca Fraternali, Luigi Cavallo:
Parameter optimized surfaces (POPS): analysis of key interactions and conformational changes in the ribosome. 2950-2960 - Yi Zhang, Zhijie Li, Daniel S. Pilch, Michael J. Leibowitz:
Pentamidine inhibits catalytic activity of group I intron Ca.LSU by altering RNA folding. 2961-2971 - Luciano De Haro, Ralf Janknecht:
Functional analysis of the transcription factor ER71 and its activation of the matrix metalloproteinase-1 promoter. 2972-2979 - Torunn Berge, Nigel S. Jenkins, Richard B. Hopkirk, Michael J. Waring, J. Michael Edwardson, Robert M. Henderson:
Structural perturbations in DNA caused by bis-intercalation of ditercalinium visualised by atomic force microscopy. 2980-2986 - Guillaume Achaz, Eduardo P. C. Rocha, P. Netter, Eric Coissac:
Origin and fate of repeats in bacteria. 2987-2994 - Conchita Vens, Els Dahmen-Mooren, Manon Verwijs-Janssen, Wim Blyweert, Lise Graversen, Harry Bartelink, Adrian C. Begg:
The role of DNA polymerase beta in determining sensitivity to ionizing radiation in human tumor cells. 2995-3004 - Jun Chen, Liang Ren Zhang, Ji Mei Min, Li He Zhang:
Studies on the synthesis of a G-rich octaoligoisonucleotide (isoT)2(isoG)4(isoT)2 by the phosphotriester approach and its formation of G-quartet structure. 3005-3014
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