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ORCIDSoftwareX, Volume 11
Volume 11, January 2020
- Dmitry Drozin
, Sergey Sozykin, Natalia Ivanova, Tatiana Olenchikova, Tatyana G. Krupnova, Natalia Krupina, Viacheslav Avdin:
Kinetic calculation: Software tool for determining the kinetic parameters of the thermal decomposition process using the Vyazovkin Method. 100359 - Matteo Ravasi, Ivan Vasconcelos:
PyLops - A linear-operator Python library for scalable algebra and optimization. 100361 - A. Kostenko, Willem Jan Palenstijn, Sophia Bethany Coban, Allard A. Hendriksen, Robert van Liere, Kees Joost Batenburg:
Prototyping X-ray tomographic reconstruction pipelines with FleXbox. 100364 - Adrian R. G. Harwood, James Gill, Simeon Gill:
JBlockCreator: An open source, pattern drafting framework to facilitate the automated manufacture of made-to-measure clothing. 100365 - Andrea Valenza, Luca Demetrio, Gabriele Costa, Giovanni Lagorio:
WAF-A-MoLE: An adversarial tool for assessing ML-based WAFs. 100367 - Konrad Werys, Iulius Dragonu, Qiang Zhang, Iulia A. Popescu, Evan Hann, Henrike Puchta, Agata Kubik, Dogan Polat, Cody Wu, Niall O. Moon, Ahmet Barutcu, Vanessa M. Ferreira, Stefan K. Piechnik:
Total Mapping Toolbox (TOMATO): An open source library for cardiac magnetic resonance parametric mapping. 100369 - Daniel Silvestre:
OPTool - An optimization toolbox for iterative algorithms. 100371 - Kara M. Koetje, Margaret L. Palmsten:
Coastal Imaging Station Design Toolbox. 100377 - Dimitrios Tsiotas, Avraam Charakopoulos:
VisExpA: Visibility expansion algorithm in the topology of complex networks. 100379 - Andy Spitzenberger, Sebastian Neumann, Martin Heinrich, Rüdiger Schwarze:
Particle detection in VOF-simulations with OpenFOAM. 100382 - Emerson Boeira, Diego Eckhard:
pyvrft: A Python package for the Virtual Reference Feedback Tuning, a direct data-driven control method. 100383 - Vladimir V. Kisil:
MoebInv: C++ libraries for manipulations in non-Euclidean geometry. 100385 - Gorka Urbikain, Luis Norberto López de Lacalle:
MoniThor: A complete monitoring tool for machining data acquisition based on FPGA programming. 100387 - Ken-ichi Nomura, Rajiv K. Kalia, Aiichiro Nakano, Pankaj Rajak, Priya Vashishta:
RXMD: A scalable reactive molecular dynamics simulator for optimized time-to-solution. 100389 - Sindre Nordmark Olufsen, Marius Endre Andersen, Egil Fagerholt:
μDIC: An open-source toolkit for digital image correlation. 100391 - Yihong Z. Mauro, Collin J. Wilkinson, John C. Mauro:
KineticPy: A tool to calculate long-time kinetics in energy landscapes with broken ergodicity. 100393 - Jose Manuel López, Daniel Feldmann, Markus Rampp, Alberto Vela-Martín, Liang Shi, Marc Avila:
nsCouette - A high-performance code for direct numerical simulations of turbulent Taylor-Couette flow. 100395 - Danny R. Ramasawmy, Ben T. Cox, Bradley E. Treeby:
ElasticMatrix: A MATLAB toolbox for anisotropic elastic wave propagation in layered media. 100397 - Carlos Gavidia-Calderon, César Armando Beltrán Castañón:
Isula: A java framework for ant colony algorithms. 100400 - Ting Li, Lawrence V. Stanislawski, Tyler Brockmeyer, Shaowen Wang, Ethan Shavers:
OpenCLC: An open-source software tool for similarity assessment of linear hydrographic features. 100401 - Simone Aonzo, Gabriel Claudiu Georgiu, Luca Verderame, Alessio Merlo:
Obfuscapk: An open-source black-box obfuscation tool for Android apps. 100403 - Ruman Gerst, Anna Medyukhina, Marc Thilo Figge:
MISA++: A standardized interface for automated bioimage analysis. 100405 - Savas Konur, Laurentiu Mierla, Florentin Ipate, Marian Gheorghe:
kPWorkbench: A software suit for membrane systems. 100407 - Michel Krämer:
GeoRocket: A scalable and cloud-based data store for big geospatial files. 100409 - Alexander Y. Yurin, Nikita O. Dorodnykh:
Personal knowledge base designer: Software for expert systems prototyping. 100411 - Thomas Janke, Rüdiger Schwarze, K. Bauer:
Part2Track: A MATLAB package for double frame and time resolved Particle Tracking Velocimetry. 100413 - Marco Archetti:
DeFinetti: A Mathematica program to analyze the replicator dynamics of 3-strategy collective interactions. 100415 - Emma Lejeune, Alex Khang, Jacob Sansom, Michael S. Sacks:
FM-Track: A fiducial marker tracking software for studying cell mechanics in a three-dimensional environment. 100417 - Valentina Zambrano, R. Rodríguez-Barrachina, Susana Calvo, Salvador Izquierdo:
TWINKLE: A digital-twin-building kernel for real-time computer-aided engineering. 100419 - Tahir Abbas, Vassilis-Javed Khan, Panos Markopoulos:
CoZ: A crowd-powered system for social robotics. 100421 - Qimen Xu, Abhiraj Sharma, Phanish Suryanarayana:
M-SPARC: Matlab-Simulation Package for Ab-initio Real-space Calculations. 100423 - Boris Bogaerts, Seppe Sels, Steve Vanlanduit, Rudi Penne:
Connecting the CoppeliaSim robotics simulator to virtual reality. 100426 - Samuel Boudet, Agathe Houze de l'Aulnoit, Romain Demailly, Aline Delgranche, Laurent Peyrodie, Régis Beuscart, Denis Houze de l'Aulnoit:
A fetal heart rate morphological analysis toolbox for MATLAB. 100428 - Cody J. Permann, Derek R. Gaston, David Andrs, Robert W. Carlsen, Fande Kong, Alexander D. Lindsay, Jason M. Miller, John W. Peterson, Andrew E. Slaughter, Roy H. Stogner, Richard C. Martineau:
MOOSE: Enabling massively parallel multiphysics simulation. 100430 - Taysseer Sharaf, Theren Williams, Abdallah A. Chehade, Keshav Pokhrel:
BLNN: An R package for training neural networks using Bayesian inference. 100432 - Brunno Machado de Campos, Raphael Fernandes Casseb, Fernando Cendes:
UF2C - User-Friendly Functional Connectivity: A neuroimaging toolbox for fMRI processing and analyses. 100434 - Niema Moshiri:
TreeSwift: A massively scalable Python tree package. 100436 - Sebastian Schwindt, Kenneth Larrieu, Gregory B. Pasternack, Geoff Rabone:
River Architect. 100438 - James A. Cornwell, Jingjing Li, Swarna Mahadevan, Jonathan S. Draper, George L. Joun, Hans Zoellner, Naisana S. Asli, Richard P. Harvey, Robert E. Nordon:
TrackPad: Software for semi-automated single-cell tracking and lineage annotation. 100440 - Udit Gupta, Dionisios G. Vlachos:
Reaction Network Viewer (ReNView): An open-source framework for reaction path visualization of chemical reaction systems. 100442 - Ana Waldila de Queiroz Ramiro Reis, Rodrigo Bird Burgos, Margareth da Silva Magalhães:
Development of a software for the numerical modeling of reinforced concrete sections - AlfaMCV. 100444 - Nikolaos Karathanasopoulos, F. Dos Reis, Panagiotis E. Hadjidoukas, Jean-François Ganghoffer:
LatticeMech: A discrete mechanics code to compute the effective static properties of 2D metamaterial structures. 100446 - Jorge Alberto Cerecedo-Cordoba, Juan Frausto Solís, Juan Javier González Barbosa:
NeuroFramework: A package based on neuroevolutionary algorithms to estimate the melting temperature of ionic liquids. 100448 - Konstantin Weise, Lucas Poßner, Erik Müller, Richard Gast, Thomas R. Knösche:
Pygpc: A sensitivity and uncertainty analysis toolbox for Python. 100450 - Robin K. S. Hankin:
Introducing the permutations R package. 100453 - Aurel Neic, Matthias A. F. Gsell, Elias Karabelas, Anton J. Prassl, Gernot Plank:
Automating image-based mesh generation and manipulation tasks in cardiac modeling workflows using Meshtool. 100454 - Marília Barandas, Duarte Folgado, Letícia Fernandes, Sara Santos, Mariana Abreu, Patrícia J. Bota, Hui Liu, Tanja Schultz, Hugo Gamboa:
TSFEL: Time Series Feature Extraction Library. 100456 - Matthew J. Roy, Nikola Stoyanov, Richard J. Moat, Philip J. Withers:
pyCM: An open-source computational framework for residual stress analysis employing the Contour Method. 100458 - Patrícia Alves-Oliveira, Samuel Gomes, Ankita Chandak, Patrícia Arriaga, Guy Hoffman, Ana Paiva:
Software architecture for YOLO, a creativity-stimulating robot. 100461 - Nicolas Renaud, Yong Jung, Vasant G. Honavar, Cunliang Geng, Alexandre M. J. J. Bonvin, Li C. Xue:
iScore: An MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines. 100462 - Mohamed M. S. Nasser:
PlgCirMap: A MATLAB toolbox for computing conformal mappings from polygonal multiply connected domains onto circular domains. 100464 - Michael Ortner, Lucas Gabriel Coliado Bandeira:
Magpylib: A free Python package for magnetic field computation. 100466 - Richard Nisius:
BLUE: Combining correlated estimates of physics observables within ROOT using the Best Linear Unbiased Estimate method. 100468 - Dhurata Nebiu, Hiqmet Kamberaj:
Symbolic Information Flow Measurement (SIFM): A software for measurement of information flow using symbolic analysis. 100470 - Conrad Stansbury, Alessandra Lanzara:
PyARPES: An analysis framework for multimodal angle-resolved photoemission spectroscopies. 100472 - Richard Semaan, Vikas Yadav:
SCOUT: Signal Correction and Uncertainty Quantification Toolbox in MATLAB. 100474 - Jürgen Dölz, Helmut Harbrecht, Stefan Kurz, Michael D. Multerer, Sebastian Schöps, Felix Wolf:
Bembel: The fast isogeometric boundary element C++ library for Laplace, Helmholtz, and electric wave equation. 100476 - Lucas L. Cendes, Welliton de Souza, Iscia Lopes-Cendes, Benilton S. Carvalho:
HPexome: An automated tool for processing whole-exome sequencing data. 100478 - Marcelo S. Medeiros, Evandro Parente:
MicroFEA 1.0 - A software package for Finite Element Analysis of functionally graded materials. 100481 - Martin Heinrich, Rüdiger Schwarze:
3D-coupling of Volume-of-Fluid and Lagrangian particle tracking for spray atomization simulation in OpenFOAM. 100483 - Wensi Wu, Justyna Kosianka, Heather M. Reed, Christopher Stull, Christopher J. Earls:
CU-BENs: A structural modeling finite element library. 100485 - Wojciech Krzemien, Aleksander Gajos, Krzysztof Kacprzak, Kamil Rakoczy, Grzegorz Korcyl:
J-PET Framework: Software platform for PET tomography data reconstruction and analysis. 100487 - Ilia A. Bautista Adames, Sudeep Sarkar, Sanjukta Bhanja:
MatlabHTM: A sequence memory model of neocortical layers for anomaly detection. 100491 - Andrea Quero Martín, Andrés Díaz Lantada:
An open source medical passport based on an Android mobile application and near-field communication. 100492 - Subasish Das, L. D. White:
RuralSpeedSafetyX: Interactive decision support tool to improve safety. 100493 - Helon Vicente Hultmann Ayala, Marcos Cesar Gritti, Leandro dos Santos Coelho:
An R library for nonlinear black-box system identification. 100495 - Umberto Maniscalco, Antonio Messina, Pietro Storniolo:
ASS4HR - An Artificial Somatosensory System for a Humanoid Robot. The ROS package. 100501 - Marcus H. Hansen, Peter Hokland, Charlotte G. Nyvold:
CNAplot - Software for visual inspection of chromosomal copy number alteration in cancer using juxtaposed sequencing read depth ratios and variant allele frequencies. 100503 - Patrick K. Herring, Chirranjeevi Balaji Gopal, Muratahan Aykol, Joseph H. Montoya, Abraham Anapolsky, Peter M. Attia, William Gent, Jens S. Hummelshøj, Linda Hung, Ha-Kyung Kwon, Patrick Moore, Daniel Schweigert, Kristen A. Severson, Santosh K. Suram, Zi Yang, Richard D. Braatz, Brian D. Storey:
BEEP: A Python library for Battery Evaluation and Early Prediction. 100506 - Jonas Eschle, Albert Navarro, Rafael Silva Coutinho, Nicola Serra:
zfit: Scalable pythonic fitting. 100508 - Editorial Board. 100529
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