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Anatomy Ontologies for Bioinformatics 2008

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Albert Burger, Duncan Davidson, Richard A. Baldock:
Anatomy Ontologies for Bioinformatics, Principles and Practice. Computational Biology 6, Springer 2008, ISBN 978-1-84628-884-5

Existing Anatomy Ontologies for Human, Model Organisms and Plants

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Jonathan Bard:
Anatomical Ontologies for Model Organisms: The Fungi and Animals. 3-25
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Katica Ilic, Seung Yon Rhee, Elizabeth A. Kellogg, Peter F. Stevens:
Plant Structure Ontology (PSO) - A Morphological and Anatomical Ontology of Flowering Plants. 27-42
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Alan L. Rector:
Anatomy for Clinical Terminology. 43-57
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Cornelius Rosse, José L. V. Mejino Jr.:
The Foundational Model of Anatomy Ontology. 59-117
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Paul N. Schofield, Björn Rozell, Georgios V. Gkoutos:
Towards a Disease Ontology. 119-130

Engineering and Linking of Anatomy Ontologies

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Patrick Lambrix, He Tan:
Ontology Alignment and Merging. 133-149
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J. Stuart Aitken, Yin Chen:
COBrA and COBrA-CT: Ontology Engineering Tools. 151-162
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Albert Burger, Jonathan Bard:
XSPAN - A Cross-Species Anatomy Network. 163-175
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Thomas Wächter, Dimitra Alexopoulou, Heiko Dietze, Jörg Hakenberg, Michael Schroeder:
Searching Biomedical Literature with Anatomy Ontologies. 177-194

Anatomy Ontologies and Spatio-Temporal Atlases

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Richard A. Baldock, Albert Burger:
Anatomical Ontologies: Linking Names to Places in Biology. 197-211
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Duncan Davidson:
Time in Anatomy. 213-247
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Richard A. Baldock, Duncan Davidson:
The Edinburgh Mouse Atlas. 249-265
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Maryann E. Martone, Ilya Zaslavsky, Amarnath Gupta, Asif Memon, Joshua Tran, Willy Wong, Lisa Fong, Stephen D. Larson, Mark H. Ellisman:
The Smart Atlas: Spatial and Semantic Strategies for Multiscale Integration of Brain Data. 267-286

Anatomy Ontologies - Modelling Principles

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Fabian Neuhaus, Barry Smith:
Modelling Principles and Methodologies - Relations in Anatomical Ontologies. 289-306
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Thomas Bittner, Maureen Donnelly, Louis J. Goldberg, Fabian Neuhaus:
Modeling Principles and Methodologies - Spatial Representation and Reasoning. 307-326
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Melissa A. Haendel, Fabian Neuhaus, David Osumi-Sutherland, Paula M. Mabee, José L. V. Mejino Jr., Chris Mungall, Barry Smith:
CARO - The Common Anatomy Reference Ontology. 327-349

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