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2020 – today
- 2023
[c3]Nils Hoffmann
, Irena Maus, Sebastian Beier, Peter Belmann, Jan Krüger, Andreas Tauch, Alexander Goesmann, Roland Eils, Peer Bork, Oliver Kohlbacher, Ursula Kummer, Rolf Backofen, Ivo Buchhalter, Alexander Sczyrba:
Embedding the de.NBI Cloud in the National Research Data Infrastructure Activities. CoRDI 2023- 2022
- [j15]Benjamin D. Maier, Luis U. Aguilera, Sven Sahle, Pascal Mutz, Priyata Kalra, Christopher Dächert, Ralf Bartenschlager, Marco Binder, Ursula Kummer:
Stochastic dynamics of Type-I interferon responses. PLoS Comput. Biol. 18(10): 1010623 (2022) - 2021
- [j14]Pascal Holzheu, Ruth Großeholz, Ursula Kummer:
Impact of explicit area scaling on kinetic models involving multiple compartments. BMC Bioinform. 22(1): 21 (2021)
2010 – 2019
- 2017
- [j13]Luis U. Aguilera, Christoph Zimmer, Ursula Kummer:
A new efficient approach to fit stochastic models on the basis of high-throughput experimental data using a model of IRF7 gene expression as case study. BMC Syst. Biol. 11(1): 26:1-26:14 (2017) - 2013
- [j12]Nadine Veith, Anna Feldman-Salit, Vlad Cojocaru, Stefan Henrich, Ursula Kummer, Rebecca C. Wade:
Organism-Adapted Specificity of the Allosteric Regulation of Pyruvate Kinase in Lactic Acid Bacteria. PLoS Comput. Biol. 9(7) (2013) - 2012
- [j11]Irina Surovtsova, Natalia Simus, Katrin Hübner, Sven Sahle, Ursula Kummer:
Simplification of biochemical models: a general approach based on the analysis of the impact of individual species and reactions on the systems dynamics. BMC Syst. Biol. 6: 14 (2012)
2000 – 2009
- 2009
- [j10]Irina Surovtsova, Natalia Simus, Thomas Lorenz, Artjom König, Sven Sahle, Ursula Kummer:
Accessible methods for the dynamic time-scale decomposition of biochemical systems. Bioinform. 25(21): 2816-2823 (2009) - [j9]Ann Zahle Andersen, Ana Lúcia Carvalho, Ana Rute Neves, Helena Santos, Ursula Kummer, Lars Folke Olsen:
The metabolic pH response in Lactococcus lactis: An integrative experimental and modelling approach. Comput. Biol. Chem. 33(1): 71-83 (2009) - 2008
- [j8]Andreas Weidemann, Stefan Richter, Matthias Stein, Sven Sahle, Ralph Gauges, Razif R. Gabdoulline, Irina Surovtsova, Nils Semmelrock, Bruno Besson, Isabel Rojas, Rebecca C. Wade, Ursula Kummer:
SYCAMORE - a systems biology computational analysis and modeling research environment. Bioinform. 24(12): 1463-1464 (2008) - [j7]Jürgen Pahle, Anne K. Green, C. Jane Dixon, Ursula Kummer:
Information transfer in signaling pathways: A study using coupled simulated and experimental data. BMC Bioinform. 9 (2008) - 2007
- [j6]Ursula Kummer:
Usage of Reaction Kinetics Data Stored in Databases - A Modeler's Point of View. Silico Biol. 7(6): 65-71 (2007) - 2006
- [j5]Stefan Hoops, Sven Sahle, Ralph Gauges, Christine Lee, Jürgen Pahle, Natalia Simus, Mudita Singhal, Liang Xu, Pedro Mendes, Ursula Kummer:
COPASI - a COmplex PAthway SImulator. Bioinform. 22(24): 3067-3074 (2006) - [c2]Irina Surovtsova, Sven Sahle, Jürgen Pahle, Ursula Kummer:
Approaches to complexity reduction in a systems biology research environment (SYCAMORE). WSC 2006: 1683-1689 - [c1]Sven Sahle, Ralph Gauges, Jürgen Pahle, Natalia Simus, Ursula Kummer, Stefan Hoops, Christine Lee, Mudita Singhal, Liang Xu, Pedro Mendes:
Simulation of biochemical networks using COPASI: a complex pathway simulator. WSC 2006: 1698-1706 - 2005
- [j4]Katja Wegner, Ursula Kummer:
A new dynamical layout algorithm for complex biochemical reaction networks. BMC Bioinform. 6: 212 (2005) - [j3]Jürgen Zobeley, Dirk Lebiedz, Julia Kammerer, Anton Ishmurzin, Ursula Kummer:
A New Time-Dependent Complexity Reduction Method for Biochemical Systems. Trans. Comp. Sys. Biology 1: 90-110 (2005) - 2004
- [j2]Katja Wegner, Stephan Jansen, Stefan Wuchty, Ralph Gauges, Ursula Kummer:
combAlign: A protein sequence comparison algorithm considering recombinations. Silico Biol. 4(3): 243-254 (2004) - 2003
- [j1]Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, Dennis Bray, Athel Cornish-Bowden, Autumn A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, Jan-Hendrik S. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, Poul M. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang:
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinform. 19(4): 524-531 (2003)
Coauthor Index
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