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2020 – today
- 2023
[j11]Moritz E. Beber
, Maxime Borry, Sofia Stamouli, James A. Fellows Yates:
TAXPASTA: TAXonomic Profile Aggregation and STAndardisation. J. Open Source Softw. 8(88): 5627 (2023)- 2022
- [j10]Moritz E. Beber, Mattia G. Gollub, Dana Mozaffari, Kevin M. Shebek, Avi I. Flamholz, Ron Milo, Elad Noor:
eQuilibrator 3.0: a database solution for thermodynamic constant estimation. Nucleic Acids Res. 50(D1): 603-609 (2022) - [j9]Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Jan Hasenauer, Joseph L. Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Rahuman S. Malik-Sheriff, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, James C. Schaff, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr:
BioSimulators: a central registry of simulation engines and services for recommending specific tools. Nucleic Acids Res. 50(W1): 108-114 (2022) - [i1]Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Joseph L. Hellerstein, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr:
BioSimulators: a central registry of simulation engines and services for recommending specific tools. CoRR abs/2203.06732 (2022) - 2021
- [j8]Vishnuvardhan Mahamkali, Tim McCubbin, Moritz Emanuel Beber, Elad Noor, Esteban Marcellin, Lars Keld Nielsen:
multiTFA: a Python package for multi-variate thermodynamics-based flux analysis. Bioinform. 37(18): 3064-3066 (2021) - [j7]Samuel M. D. Seaver, Filipe Liu, Qizhi Zhang, James G. Jeffryes, José P. Faria, Janaka N. Edirisinghe, Michael B. Mundy, Nicholas Chia, Elad Noor, Moritz Emanuel Beber, Aaron A. Best, Matthew DeJongh, Jeffrey A. Kimbrel, Patrik D'haeseleer, Sean R. McCorkle, Jay R. Bolton, Erik Pearson, Shane Canon, Elisha M. Wood-Charlson, Robert W. Cottingham, Adam P. Arkin, Christopher S. Henry:
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes (Corrigendum). Nucleic Acids Res. 49(Database-Issue): D1555 (2021) - [j6]Samuel M. D. Seaver, Filipe Liu, Qizhi Zhang, James G. Jeffryes, José P. Faria, Janaka N. Edirisinghe, Michael B. Mundy, Nicholas Chia, Elad Noor, Moritz Emanuel Beber, Aaron A. Best, Matthew DeJongh, Jeffrey A. Kimbrel, Patrik D'haeseleer, Sean R. McCorkle, Jay R. Bolton, Erik Pearson, Shane Canon, Elisha M. Wood-Charlson, Robert W. Cottingham, Adam P. Arkin, Christopher S. Henry:
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes. Nucleic Acids Res. 49(Database-Issue): D575-D588 (2021) - 2020
- [j5]David Tourigny, Jorge Muriel, Moritz Emanuel Beber:
dfba: Software for efficient simulation of dynamic flux-balance analysis models in Python. J. Open Source Softw. 5(52): 2342 (2020)
2010 – 2019
- 2016
- [j4]Moritz Emanuel Beber, Georgi Muskhelishvili, Marc-Thorsten Hütt:
Effect of database drift on network topology and enrichment analyses: a case study for RegulonDB. Database J. Biol. Databases Curation 2016 (2016) - [j3]Christopher Hardt, Moritz Emanuel Beber, Axel Rasche, Atanas Kamburov, Dennie G. A. J. Hebels, Jos C. S. Kleinjans, Ralf Herwig:
ToxDB: pathway-level interpretation of drug-treatment data. Database J. Biol. Databases Curation 2016 (2016) - 2015
- [j2]Kosmas Kosmidis, Moritz Emanuel Beber, Marc-Thorsten Hütt:
Network Heterogeneity and Node Capacity lead to Heterogeneous Scaling of fluctuations in Random Walks on graphs. Adv. Complex Syst. 18(1-2): 1550007:1-1550007:22 (2015) - 2012
- [j1]Moritz Emanuel Beber, Marc-Thorsten Hütt:
How do production systems in biological cells maintain their function in changing environments? Logist. Res. 5(3-4): 79-87 (2012) - [c1]Till Becker, Mirja Meyer, Moritz Emanuel Beber, Katja Windt, Marc-Thorsten Hütt:
A Comparison of Network Characteristics in Metabolic and Manufacturing Systems. LDIC 2012: 141-150
Coauthor Index
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