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ORCIDTodd Lingren
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2020 – today
- 2021
[c11]Jennifer A. Pacheco, Luke V. Rasmussen, Ken Wiley, Thomas N. Person, David J. Cronkite, Sunghwan Sohn, Shawn N. Murphy, Justin H. Gundelach, Vivian S. Gainer, Victor M. Castro, Cong Liu, Todd Lingren, Frank D. Mentch, Agnes S. Sundaresan, Garrett Eickelberg, Valerie Willis, Al'ona Furmanchuk, Roshan Patel, David S. Carrell, Marc S. Williams, Elizabeth W. Karlson, Jodell E. Linder, Yuan Luo, Chunhua Weng, Wei-Qi Wei:
Evaluation of the Portability of Natural Language Processing-based Computable Phenotypes in the eMERGE Network. AMIA 2021
2010 – 2019
- 2019
- [j18]George Hripcsak, Ning Shang, Peggy L. Peissig, Luke V. Rasmussen
, Cong Liu, Barbara Benoit, Robert J. Carroll, David S. Carrell, Joshua C. Denny, Ozan Dikilitas, Vivian S. Gainer, Kayla Marie Howell, Jeffrey G. Klann, Iftikhar J. Kullo, Todd Lingren, Frank D. Mentch, Shawn N. Murphy, Karthik Natarajan, Chunhua Weng:
Facilitating phenotype transfer using a common data model. J. Biomed. Informatics 96 (2019) - [j17]Ning Shang, Cong Liu, Luke V. Rasmussen, Casey N. Ta, Robert J. Carroll, Barbara Benoit, Todd Lingren, Ozan Dikilitas, Frank D. Mentch, David S. Carrell, Wei-Qi Wei, Yuan Luo, Vivian S. Gainer, Iftikhar J. Kullo, Jennifer A. Pacheco, Hakon Hakonarson, Theresa L. Walunas, Joshua C. Denny, Chunhua Weng:
Making work visible for electronic phenotype implementation: Lessons learned from the eMERGE network. J. Biomed. Informatics 99 (2019) - 2018
- [j16]Todd Lingren, Senthilkumar Sadhasivam, Xue Zhang, Keith Marsolo:
Electronic medical records as a replacement for prospective research data collection in postoperative pain and opioid response studies. Int. J. Medical Informatics 111: 45-50 (2018) - [j15]Cole Brokamp, Chris Wolfe, Todd Lingren, John Harley, Patrick B. Ryan:
Decentralized and reproducible geocoding and characterization of community and environmental exposures for multisite studies. J. Am. Medical Informatics Assoc. 25(3): 309-314 (2018) - [j14]Yizhao Ni, Todd Lingren, Eric S. Hall, Matthew Leonard, Kristin Melton, Eric S. Kirkendall:
Designing and evaluating an automated system for real-time medication administration error detection in a neonatal intensive care unit. J. Am. Medical Informatics Assoc. 25(5): 555-563 (2018) - 2017
- [c10]Todd Lingren, Yizhao Ni, Eric S. Hall, Matthew Leonard, Eric S. Kirkendall, Kristin Melton:
Integrating Smart Pump Infusion Data with Electronic Health Record Data to Analyze Medication Administration Alerts. AMIA 2017 - [c9]Yizhao Ni, Todd Lingren, Eric S. Hall, Matthew Leonard, Kristin Melton, Eric S. Kirkendall:
Designing and Evaluating an Automated System for Real-time Medication Administration Error Detection in a Neonatal Intensive Care Unit. AMIA 2017 - 2016
- [j13]Cassandra Brady, Bahram Namjou, Stephanie Kennebeck, Jonathan Bickel, Nandan Patibandla, Yizhao Ni, Sara Van Driest, Lixin Chen, Ashton Roach, Beth Cobb, Jacqueline Kirby, Joshua C. Denny, Lisa Bailey-Davis, Marc S. Williams, Keith Marsolo, Imre Solti, Ingrid A. Holm, John Harley, Isaac S. Kohane, Guergana Savova, Nancy Crimmins, Todd Lingren, Vidhu Thaker:
Developing an Algorithm to Detect Early Childhood Obesity in Two Tertiary Pediatric Medical Centers. Appl. Clin. Inform. 07(03): 693-706 (2016) - [j12]Jacqueline Kirby, Peter Speltz, Luke V. Rasmussen, Melissa A. Basford, Omri Gottesman, Peggy L. Peissig, Jennifer A. Pacheco, Gerard Tromp, Jyotishman Pathak, David S. Carrell, Stephen B. Ellis, Todd Lingren, William K. Thompson, Guergana Savova, Jonathan L. Haines, Dan M. Roden, Paul A. Harris, Joshua C. Denny:
PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability. J. Am. Medical Informatics Assoc. 23(6): 1046-1052 (2016) - 2015
- [j11]Yizhao Ni, Stephanie Kennebeck, Judith W. Dexheimer, Constance M. McAneney, Huaxiu Tang, Todd Lingren, Qi Li, Haijun Zhai, Imre Solti:
Automated clinical trial eligibility prescreening: increasing the efficiency of patient identification for clinical trials in the emergency department. J. Am. Medical Informatics Assoc. 22(1): 166-178 (2015) - [j10]Huan Mo, William K. Thompson, Luke V. Rasmussen, Jennifer A. Pacheco, Guoqian Jiang, Richard C. Kiefer, Qian Zhu, Jie Xu, Enid N. H. Montague, David S. Carrell, Todd Lingren, Frank D. Mentch, Yizhao Ni, Firas H. Wehbe, Peggy L. Peissig, Gerard Tromp, Eric B. Larson, Christopher G. Chute, Jyotishman Pathak, Joshua C. Denny, Peter Speltz, Abel N. Kho, Gail P. Jarvik, Cosmin Adrian Bejan, Marc S. Williams, Kenneth Borthwick, Terrie E. Kitchner, Dan M. Roden, Paul A. Harris:
Desiderata for computable representations of electronic health records-driven phenotype algorithms. J. Am. Medical Informatics Assoc. 22(6): 1220-1230 (2015) - [j9]Qi Li, Eric S. Kirkendall, Eric S. Hall, Yizhao Ni, Todd Lingren, Megan Kaiser, Nataline Lingren, Haijun Zhai, Imre Solti, Kristin Melton:
Automated detection of medication administration errors in neonatal intensive care. J. Biomed. Informatics 57: 124-133 (2015) - [j8]Yizhao Ni, Jordan Wright, John Perentesis, Todd Lingren, Louise Deléger, Megan Kaiser, Isaac S. Kohane, Imre Solti:
Increasing the efficiency of trial-patient matching: automated clinical trial eligibility Pre-screening for pediatric oncology patients. BMC Medical Informatics Decis. Mak. 15: 28 (2015) - [j7]Qi Li, Stephen Andrew Spooner, Megan Kaiser, Nataline Lingren, Jessica Robbins, Todd Lingren, Huaxiu Tang, Imre Solti, Yizhao Ni:
An end-to-end hybrid algorithm for automated medication discrepancy detection. BMC Medical Informatics Decis. Mak. 15: 37 (2015) - 2014
- [j6]Todd Lingren, Louise Deléger, Katalin Molnár, Haijun Zhai, Jareen Meinzen-Derr, Megan Kaiser, Laura Stoutenborough, Qi Li, Imre Solti:
Evaluating the impact of pre-annotation on annotation speed and potential bias: natural language processing gold standard development for clinical named entity recognition in clinical trial announcements. J. Am. Medical Informatics Assoc. 21(3): 406-413 (2014) - [j5]Qi Li, Kristin Melton, Todd Lingren, Eric S. Kirkendall, Eric S. Hall, Haijun Zhai, Yizhao Ni, Megan Kaiser, Laura Stoutenborough, Imre Solti:
Research and applications: Phenotyping for patient safety: algorithm development for electronic health record based automated adverse event and medical error detection in neonatal intensive care. J. Am. Medical Informatics Assoc. 21(5): 776-784 (2014) - [j4]Louise Deléger, Todd Lingren, Yizhao Ni, Megan Kaiser, Laura Stoutenborough, Keith Marsolo, Michal Kouril, Katalin Molnár, Imre Solti:
Preparing an annotated gold standard corpus to share with extramural investigators for de-identification research. J. Biomed. Informatics 50: 173-183 (2014) - [c8]Todd Lingren, Pawel Matykiewicz, Yizhao Ni, Shannon M. Standridge, Katherine D. Holland, Imre Solti, Tracy A. Glauser, John Pestian:
Detecting Epilepsy Diagnosis in Clinical Notes: A Comparison of Traditional Text Classification Methods. AMIA 2014 - [c7]Yizhao Ni, Stephanie Kennebeck, Constance M. McAneney, Judith W. Dexheimer, Todd Lingren, Qi Li, Haijun Zhai, Imre Solti:
Automated Clinical Trial Eligibility Pre-Screening: Increasing the Efficiency of Participant Identification for Clinical Trials. AMIA 2014 - 2013
- [j3]Louise Deléger, Katalin Molnár, Guergana Savova, Fei Xia, Todd Lingren, Qi Li, Keith Marsolo, Anil G. Jegga, Megan Kaiser, Laura Stoutenborough, Imre Solti:
Large-scale evaluation of automated clinical note de-identification and its impact on information extraction. J. Am. Medical Informatics Assoc. 20(1): 84-94 (2013) - [j2]Qi Li, Haijun Zhai, Louise Deléger, Todd Lingren, Megan Kaiser, Laura Stoutenborough, Imre Solti:
A sequence labeling approach to link medications and their attributes in clinical notes and clinical trial announcements for information extraction. J. Am. Medical Informatics Assoc. 20(5): 915-921 (2013) - [j1]Qi Li, Louise Deléger, Todd Lingren, Haijun Zhai, Megan Kaiser, Laura Stoutenborough, Anil G. Jegga, Kevin Bretonnel Cohen, Imre Solti:
Mining FDA drug labels for medical conditions. BMC Medical Informatics Decis. Mak. 13: 53 (2013) - [c6]Haijun Zhai, Patrick Brady, Qi Li, Todd Lingren, Yizhao Ni, Derek S. Wheeler, Imre Solti:
Predicting the Need for Pediatric Intensive Care Unit (PICU) Transfer for Newly Hospitalized Children with Machine Learning. AMIA 2013 - 2012
- [c5]Louise Deléger, Qi Li, Todd Lingren, Megan Kaiser, Katalin Molnár, Laura Stoutenborough, Michal Kouril, Keith Marsolo, Imre Solti:
Building Gold Standard Corpora for Medical Natural Language Processing Tasks. AMIA 2012 - [c4]Louise Deléger, Holly Brodzinski, Haijun Zhai, Qi Li, Todd Lingren, Eric S. Kirkendall, Evaline Alessandrini, Imre Solti:
Using Natural Language Processing and the Electronic Health Record for Appendicitis Risk Stratification. HISB 2012: 32 - [c3]Qi Li, Haijun Zhai, Louise Deléger, Todd Lingren, Megan Kaiser, Laura Stoutenborough, Imre Solti:
Linking Medications and Their Attributes in Clinical Notes and Clinical Trial Announcements for Information Extraction: A Sequence Labeling Approach. HISB 2012: 84 - [c2]Haijun Zhai, Todd Lingren, Louise Deléger, Qi Li, Megan Kaiser, Laura Stoutenborough, Imre Solti:
Cheap, Fast, and Good Enough for the Non-biomedical Domain but is It Usable for Clinical Natural Language Processing? Evaluating Crowdsourcing for Clinical Trial Announcement Named Entity Annotations. HISB 2012: 106 - [c1]Todd Lingren, Louise Deléger, Katalin Molnár, Haijun Zhai, Jareen Meinzen-Derr, Megan Kaiser, Laura Stoutenborough, Qi Li, Imre Solti:
Pre-annotating Clinical Notes and Clinical Trial Announcements for Gold Standard Corpus Development: Evaluating the Impact on Annotation Speed and Potential Bias. HISB 2012: 108
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