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ORCIDPavel Tomancak
Person information
- affiliation: Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
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2020 – today
- 2022
[j11]Matthias Arzt, Joran Deschamps
, Christopher Schmied, Tobias Pietzsch, Deborah Schmidt, Pavel Tomancak, Robert Haase, Florian Jug:
LABKIT: Labeling and Segmentation Toolkit for Big Image Data. Frontiers Comput. Sci. 4: 777728 (2022)- [j10]Manan Lalit, Pavel Tomancak, Florian Jug:
EmbedSeg: Embedding-based Instance Segmentation for Biomedical Microscopy Data. Medical Image Anal. 81: 102523 (2022) - 2021
- [c11]Manan Lalit, Pavel Tomancak, Florian Jug:
Embedding-based Instance Segmentation in Microscopy. MIDL 2021: 399-415 - [i5]Manan Lalit, Pavel Tomancak, Florian Jug:
Embedding-based Instance Segmentation of Microscopy Images. CoRR abs/2101.10033 (2021) - 2020
- [c10]Manan Lalit, Mette Handberg-Thorsager, Yu-Wen Hsieh, Florian Jug, Pavel Tomancak:
Registration of Multi-modal Volumetric Images by Establishing Cell Correspondence. ECCV Workshops (1) 2020: 458-473 - [c9]Mangal Prakash, Manan Lalit, Pavel Tomancak, Alexander Krull, Florian Jug:
Fully Unsupervised Probabilistic Noise2Void. ISBI 2020: 154-158 - [c8]Mangal Prakash, Tim-Oliver Buchholz, Manan Lalit, Pavel Tomancak, Florian Jug, Alexander Krull:
Leveraging Self-supervised Denoising for Image Segmentation. ISBI 2020: 428-432
2010 – 2019
- 2019
- [j9]Jan Kozuszník, Petr Bainar, Jana Klímová, Michal Krumnikl, Pavel Moravec, Václav Svaton, Pavel Tomancák:
SPIM workflow manager for HPC. Bioinform. 35(19): 3875-3876 (2019) - [c7]Vaclav Svaton, Jan Martinovic, Jan Krenek, Thomas Esch, Pavel Tomancak:
HPC-as-a-Service via HEAppE Platform. CISIS 2019: 280-293 - [c6]Ulrik Günther, Tobias Pietzsch, Aryaman Gupta, Kyle I. S. Harrington, Pavel Tomancak, Stefan Gumhold, Ivo F. Sbalzarini:
scenery: Flexible Virtual Reality Visualization on the Java VM. IEEE VIS (Short Papers) 2019: 166-170 - [i4]Ulrik Günther, Tobias Pietzsch, Aryaman Gupta, Kyle I. S. Harrington, Pavel Tomancak, Stefan Gumhold, Ivo F. Sbalzarini:
scenery - Flexible Virtual Reality Visualisation on the Java VM. CoRR abs/1906.06726 (2019) - [i3]Mangal Prakash, Tim-Oliver Buchholz, Manan Lalit, Pavel Tomancak, Florian Jug, Alexander Krull:
Leveraging Self-supervised Denoising for Image Segmentation. CoRR abs/1911.12239 (2019) - [i2]Mangal Prakash, Manan Lalit, Pavel Tomancak, Alexander Krull, Florian Jug:
Fully Unsupervised Probabilistic Noise2Void. CoRR abs/1911.12291 (2019) - 2018
- [c5]Michal Krumnikl, Petr Bainar, Jana Klímová, Jan Kozuszník, Pavel Moravec, Václav Svaton, Pavel Tomancák:
SciJava Interface for Parallel Execution in the ImageJ Ecosystem. CISIM 2018: 288-299 - 2016
- [j8]Christopher Schmied, Peter Steinbach, Tobias Pietzsch, Stephan Preibisch, Pavel Tomancak:
An automated workflow for parallel processing of large multiview SPIM recordings. Bioinform. 32(7): 1112-1114 (2016) - [c4]Hendrik Sollich, Ulrich von Zadow, Tobias Pietzsch, Pavel Tomancak, Raimund Dachselt:
Exploring Time-dependent Scientific Data Using Spatially Aware Mobiles and Large Displays. ISS 2016: 349-354 - 2014
- [i1]Tobias Pietzsch, Stephan Saalfeld, Stephan Preibisch, Pavel Tomancak:
BigDataViewer: Interactive Visualization and Image Processing for Terabyte Data Sets. CoRR abs/1412.0488 (2014) - 2013
- [j7]Tobias Pietzsch, Stephan Preibisch, Pavel Tomancak, Stephan Saalfeld:
ImgLib2 - generic image processing in Java. Bioinform. 29(2): 298 (2013) - 2012
- [j6]Tobias Pietzsch, Stephan Preibisch, Pavel Tomancak, Stephan Saalfeld:
ImgLib2 - generic image processing in Java. Bioinform. 28(22): 3009-3011 (2012) - 2011
- [j5]Alex T. Kalinka, Pavel Tomancak:
linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type. Bioinform. 27(14): 2011-2012 (2011) - 2010
- [j4]Stephan Saalfeld, Albert Cardona, Volker Hartenstein, Pavel Tomancak:
As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets. Bioinform. 26(12): 57-63 (2010) - [j3]Arunachalam Manonmani, Karthik Jayasurya, Pavel Tomancak, Uwe Ohler:
An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes. Bioinform. 26(17): 2109-2115 (2010)
2000 – 2009
- 2009
- [j2]Stephan Preibisch, Stephan Saalfeld, Pavel Tomancak:
Globally optimal stitching of tiled 3D microscopic image acquisitions. Bioinform. 25(11): 1463-1465 (2009) - [j1]Stephan Saalfeld, Albert Cardona, Volker Hartenstein, Pavel Tomancak:
CATMAID: collaborative annotation toolkit for massive amounts of image data. Bioinform. 25(15): 1984-1986 (2009) - [c3]Stephan Preibisch, Stephan Saalfeld, Torsten Rohlfing, Pavel Tomancak:
Bead-based mosaicing of single plane illumination microscopy images using geometric local descriptor matching. Medical Imaging: Image Processing 2009: 72592S - 2008
- [c2]Stephan Preibisch, Radoslaw Ejsmont, Torsten Rohlfing, Pavel Tomancak:
Towards digital representation of Drosophila embryogenesis. ISBI 2008: 324-327 - [c1]Stephan Preibisch, Torsten Rohlfing, Michael P. Hasak, Pavel Tomancak:
Mosaicing of single plane illumination microscopy images using groupwise registration and fast content-based image fusion. Medical Imaging: Image Processing 2008: 69140E
Coauthor Index
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