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2020 – today
- 2023
[c8]John Beverley, Sam Smith, Matthew Diller, William D. Duncan, Jie Zheng, John W. Judkins, William R. Hogan, Robin McGill, Damion M. Dooley, Yongqun He:
The Occupation Ontology (OccO): Building a Bridge between Global Occupational Standards. JOWO 2023- 2022
- [j3]Beatrice Amos, Cristina Aurrecoechea, Matthieu Barba
, Ana Barreto, Evelina Y. Basenko, Wojciech Bazant, Robert Belnap, Ann S. Blevins, Ulrike Böhme, John Brestelli, Brian P. Brunk, Mark J. Caddick, Danielle Callan, Lahcen I. Campbell, Mikkel B. Christensen, George K. Christophides, Kathryn Crouch, Kristina Davis, Jeremy D. DeBarry, Ryan Doherty, Yikun Duan, Michael Dunn, Dave Falke, Steve Fisher, Paul Flicek, Brett Fox, Bindu Gajria, Gloria I. Giraldo-Calderón, Omar S. Harb, Elizabeth Harper, Christiane Hertz-Fowler, Mark J. Hickman, Connor Howington, Sufen Hu, Jay C. Humphrey, John Iodice, Andrew R. Jones, John Judkins, Sarah A. Kelly, Jessica C. Kissinger, Dae Kun Kwon, Kristopher Lamoureux, Daniel Lawson, Wei Li, Kallie Lies, Disha Lodha, Jamie Long, Robert M. MacCallum, Gareth Maslen, Mary Ann McDowell, Jaroslaw Nabrzyski, David S. Roos, Samuel S. C. Rund, Stephanie wever Schulman, Achchuthan Shanmugasundram, Vasily Sitnik, Drew Spruill, David Starns, Christian J. Stoeckert Jr., Sheena Shah Tomko, Haiming Wang, Susanne Warrenfeltz, Robert Wieck, Paul A. Wilkinson, Lin Xu, Jie Zheng:
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center. Nucleic Acids Res. 50(D1): 898-911 (2022) - 2021
- [j2]Randi Vita, Jie Zheng, Rebecca C. Jackson, Damion M. Dooley, James A. Overton, Mark A. Miller, Daniel C. Berrios, Richard H. Scheuermann, Yongqun He, Hande Küçük-McGinty, Mathias Brochhausen, Aisyah Yu Lin, Sagar B. Jain, Marcus C. Chibucos, John Judkins, Michelle G. Giglio, Irene Y. Feng, Gully Burns, Matthew H. Brush, Bjoern Peters, Christian J. Stoeckert Jr.:
Standardization of assay representation in the Ontology for Biomedical Investigations. Database J. Biol. Databases Curation 2021 (2021)
2010 – 2019
- 2019
- [c7]Jie Zheng, John Judkins, Christian J. Stoeckert Jr.:
OWLmaker: An Application for Generating OWL Files from Tabular Text. ICBO 2019: 1-3 - [c6]Joseph Utecht, Jane Ball, Stephen M. Bowman, Jimm Dodd, John Judkins, Robert T. Maxson, Rosemary Nabaweesi, Rohit Pradhan, Nels D. Sanddal, Robert J. Winchell, Mathias Brochhausen:
Development and Validation of a Controlled Vocabulary: An OWL Representation of Organizational Structures of Trauma Centers and Trauma Systems. MedInfo 2019: 403-407 - 2018
- [j1]John Judkins, Jessica Tay-Sontheimer, Richard D. Boyce, Mathias Brochhausen:
Extending the DIDEO ontology to include entities from the natural product drug interaction domain of discourse. J. Biomed. Semant. 9(1): 15:1-15:9 (2018) - [c5]Richard D. Boyce, Isabelle Ragueneau-Majlessi, Jingjing Yu, Jessica Sontheimer, Chris Kinsella, Eric Chou, Mathias Brochhausen, John Judkins, Brandon T. Gufford, Bruce Pinkleton, Rebecca L. Cooney, Mary Paine, Jeannine S. McCune:
Developing User Personas to Aid in the Design of a User-Centered Natural Product-Drug Interaction Information Resource for Researchers. AMIA 2018 - 2017
- [c4]Richard D. Boyce, Isabelle Ragueneau-Majlessi, Jingjing Yu, Jessica Sontheimer, Chris Kinsella, Mathias Brochhausen, John Judkins, Bruce Pinkleton, Rebecca L. Cooney, Mary Paine, Jeannine McCune:
Toward a reliable and interoperable public repository for natural product drug interaction study data. AMIA 2017 - [c3]Joseph Utecht, Mathias Brochhausen, John Judkins, Jodi Schneider, Richard D. Boyce:
Formalizing Evidence Type Definitions for Drug-Drug Interaction Studies to Improve Evidence Base Curation. MedInfo 2017: 960-964 - 2016
- [c2]John Judkins, Joseph Utecht, Mathias Brochhausen:
Easy Extraction of Terms and Definitions with OWL2TL. ICBO/BioCreative 2016 - [c1]Joseph Utecht, John Judkins, Mathias Brochhausen, Terra Colvin Jr., J. Neil Otte, Nicholas Rogers, Robert Rose, Maria Alvi, Amanda Hicks, Jane Ball, Stephen M. Bowman, Robert T. Maxson, Rosemary Nabaweesi, Rohit Pradhan, Nels D. Sanddal, M. Eduard Tudoreanu, Robert J. Winchell:
OOSTT: a Resource for Analyzing the Organizational Structures of Trauma Centers and Trauma Systems. ICBO/BioCreative 2016
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