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2020 – today
- 2024
[j71]Nanjun Chen
, Jixiang Yu, Zhe Liu, Fuzhou Wang, Xiangtao Li, Ka-Chun Wong:
TP-LMMSG: a peptide prediction graph neural network incorporating flexible amino acid property representation. Briefings Bioinform. 25(4) (2024)- [j70]Zhe Liu, Hiu-Man Wong, Xingjian Chen, Jiecong Lin, Shixiong Zhang, Shankai Yan, Fuzhou Wang, Xiangtao Li, Ka-Chun Wong:
MotifHub: Detection of trans-acting DNA motif group with probabilistic modeling algorithm. Comput. Biol. Medicine 168: 107753 (2024) - [j69]Xubin Wang, Yunhe Wang, Zhiqiang Ma, Ka-Chun Wong, Xiangtao Li:
Evolving pathway activation from cancer gene expression data using nature-inspired ensemble optimization. Expert Syst. Appl. 248: 123469 (2024) - [j68]Yihang Wu, Yanmei Hu, Siyuan Yin, Biao Cai, Xiaochuan Tang, Xiangtao Li:
A graph convolutional network model based on regular equivalence for identifying influential nodes in complex networks. Knowl. Based Syst. 301: 112235 (2024) - [j67]Xubin Wang, Yunhe Wang, Zhiqiang Ma, Ka-Chun Wong, Xiangtao Li:
Exhaustive Exploitation of Nature-Inspired Computation for Cancer Screening in an Ensemble Manner. IEEE ACM Trans. Comput. Biol. Bioinform. 21(5): 1366-1379 (2024) - [c10]Jixiang Yu, Nanjun Chen, Ming Gao, Xiangtao Li, Ka-Chun Wong:
Unsupervised Gene-Cell Collective Representation Learning with Optimal Transport. AAAI 2024: 356-364 - [i4]Xubin Wang, Yunhe Wang, Zhiqiang Ma, Ka-Chun Wong, Xiangtao Li:
Exhaustive Exploitation of Nature-inspired Computation for Cancer Screening in an Ensemble Manner. CoRR abs/2404.04547 (2024) - 2023
- [j66]Muhammad Toseef, Olutomilayo Olayemi Petinrin, Fuzhou Wang, Saifur Rahaman, Zhe Liu, Xiangtao Li, Ka-Chun Wong:
Deep transfer learning for clinical decision-making based on high-throughput data: comprehensive survey with benchmark results. Briefings Bioinform. 24(4) (2023) - [j65]Yunhe Wang, Zhuohan Yu, Shaochuan Li, Chuang Bian, Yanchun Liang, Ka-Chun Wong, Xiangtao Li:
scBGEDA: deep single-cell clustering analysis via a dual denoising autoencoder with bipartite graph ensemble clustering. Bioinform. 39(2) (2023) - [j64]Pingping Sun, Shijie Fan, Shaochuan Li, Yingwei Zhao, Chang Lu, Ka-Chun Wong, Xiangtao Li:
Automated exploitation of deep learning for cancer patient stratification across multiple types. Bioinform. 39(11) (2023) - [j63]Yixiang Shan, Jielong Yang, Xiangtao Li, Xionghu Zhong, Yi Chang:
GLAE: A graph-learnable auto-encoder for single-cell RNA-seq analysis. Inf. Sci. 621: 88-103 (2023) - [j62]Yanmei Hu, Min Lu, Xiangtao Li, Biao Cai:
Differential evolution based on network structure for feature selection. Inf. Sci. 635: 279-297 (2023) - [j61]Tianxi Ma, Yunhe Wang, Xiangtao Li:
Convex combination multiple populations competitive swarm optimization for moving target search using UAVs. Inf. Sci. 641: 119104 (2023) - [j60]Yanchi Su, Haoran Zhu, Ka-Chun Wong, Yi Chang, Xiangtao Li:
Hyperspectral Image Denoising via Weighted Multidirectional Low-Rank Tensor Recovery. IEEE Trans. Cybern. 53(5): 2753-2766 (2023) - [c9]Yue Cheng, Yanchi Su, Zhuohan Yu, Yanchun Liang, Ka-Chun Wong, Xiangtao Li:
Unsupervised Deep Embedded Fusion Representation of Single-Cell Transcriptomics. AAAI 2023: 5036-5044 - 2022
- [j59]Lei Huang, Jiecong Lin, Xiangtao Li, Linqi Song, Zetian Zheng, Ka-Chun Wong:
EGFI: drug-drug interaction extraction and generation with fusion of enriched entity and sentence information. Briefings Bioinform. 23(1) (2022) - [j58]Xiangtao Li, Shaochuan Li, Lei Huang, Shixiong Zhang, Ka-Chun Wong:
High-throughput single-cell RNA-seq data imputation and characterization with surrogate-assisted automated deep learning. Briefings Bioinform. 23(1) (2022) - [j57]Yuning Yang, Zilong Hou, Yansong Wang, Hongli Ma, Pingping Sun, Zhiqiang Ma, Ka-Chun Wong, Xiangtao Li:
HCRNet: high-throughput circRNA-binding event identification from CLIP-seq data using deep temporal convolutional network. Briefings Bioinform. 23(2) (2022) - [j56]Muhammad Toseef, Xiangtao Li, Ka-Chun Wong:
Reducing healthcare disparities using multiple multiethnic data distributions with fine-tuning of transfer learning. Briefings Bioinform. 23(3) (2022) - [j55]Lei Huang, Jiecong Lin, Rui Liu, Zetian Zheng, Lingkuan Meng, Xingjian Chen, Xiangtao Li, Ka-Chun Wong:
CoaDTI: multi-modal co-attention based framework for drug-target interaction annotation. Briefings Bioinform. 23(6) (2022) - [j54]Shaochuan Li, Yuning Yang, Xin Wang, Jun Li, Jun Yu, Xiangtao Li, Ka-Chun Wong:
Colorectal cancer subtype identification from differential gene expression levels using minimalist deep learning. BioData Min. 15(1) (2022) - [j53]Yawei Wang, Yuning Yang, Zhiqiang Ma, Ka-Chun Wong, Xiangtao Li:
EDCNN: identification of genome-wide RNA-binding proteins using evolutionary deep convolutional neural network. Bioinform. 38(3): 678-686 (2022) - [j52]Yifu Lu, Zhuohan Yu, Yunhe Wang, Zhiqiang Ma, Ka-Chun Wong, Xiangtao Li:
GMHCC: high-throughput analysis of biomolecular data using graph-based multiple hierarchical consensus clustering. Bioinform. 38(11): 3020-3028 (2022) - [j51]Yanchi Su, Fuzhou Wang, Shixiong Zhang, Yanchun Liang, Ka-Chun Wong, Xiangtao Li:
scWMC: weighted matrix completion-based imputation of scRNA-seq data via prior subspace information. Bioinform. 38(19): 4537-4545 (2022) - [j50]Yunhe Wang, Ka-Chun Wong, Xiangtao Li:
Exploring high-throughput biomolecular data with multiobjective robust continuous clustering. Inf. Sci. 583: 239-265 (2022) - [j49]Xubin Wang, Yunhe Wang, Ka-Chun Wong, Xiangtao Li:
A self-adaptive weighted differential evolution approach for large-scale feature selection. Knowl. Based Syst. 235: 107633 (2022) - [j48]Haoran Zhu, Yunhe Wang, Xiangtao Li:
UCAV Path Planning for Avoiding Obstacles using Cooperative Co-evolution Spider Monkey Optimization. Knowl. Based Syst. 246: 108713 (2022) - [j47]Yansong Wang, Zilong Hou, Yuning Yang, Ka-Chun Wong, Xiangtao Li:
Genome-wide identification and characterization of DNA enhancers with a stacked multivariate fusion framework. PLoS Comput. Biol. 18(12): 1010779 (2022) - [j46]Yunhe Wang, Xiangtao Li, Ka-Chun Wong, Yi Chang, Shengxiang Yang:
Evolutionary Multiobjective Clustering Algorithms With Ensemble for Patient Stratification. IEEE Trans. Cybern. 52(10): 11027-11040 (2022) - [j45]Olutomilayo Olayemi Petinrin, Xiangtao Li, Ka-Chun Wong:
Particle Swarm Optimized Gaussian Process Classifier for Treatment Discontinuation Prediction in Multicohort Metastatic Castration-Resistant Prostate Cancer Patients. IEEE J. Biomed. Health Informatics 26(3): 1309-1317 (2022) - [j44]Zetian Zheng, Weidun Xie, Xingjian Chen, Fuzhou Wang, Lei Huang, Xiangtao Li, Qiuzhen Lin, Ka-Chun Wong:
Subclass-Specific Prognosis and Treatment Efficacy Inference in Head and Neck Squamous Carcinoma. IEEE J. Biomed. Health Informatics 26(8): 4303-4313 (2022) - [j43]Yunhe Wang, Chuang Bian, Ka-Chun Wong, Xiangtao Li, Shengxiang Yang:
Multiobjective Deep Clustering and its Applications in Single-cell RNA-seq Data. IEEE Trans. Syst. Man Cybern. Syst. 52(8): 5016-5027 (2022) - [c8]Zhuohan Yu, Yifu Lu, Yunhe Wang, Fan Tang, Ka-Chun Wong, Xiangtao Li:
ZINB-Based Graph Embedding Autoencoder for Single-Cell RNA-Seq Interpretations. AAAI 2022: 4671-4679 - 2021
- [j42]Xiangtao Li, Shaochuan Li, Yunhe Wang, Shixiong Zhang, Ka-Chun Wong:
Identification of pan-cancer Ras pathway activation with deep learning. Briefings Bioinform. 22(4) (2021) - [j41]Yuning Yang, Zilong Hou, Zhiqiang Ma, Xiangtao Li, Ka-Chun Wong:
iCircRBP-DHN: identification of circRNA-RBP interaction sites using deep hierarchical network. Briefings Bioinform. 22(4) (2021) - [j40]Xiangtao Li, Shixiong Zhang, Ka-Chun Wong:
Deep embedded clustering with multiple objectives on scRNA-seq data. Briefings Bioinform. 22(5) (2021) - [j39]Yuning Yang, Shaochuan Li, Yunhe Wang, Zhiqiang Ma, Ka-Chun Wong, Xiangtao Li:
Identification of haploinsufficient genes from epigenomic data using deep forest. Briefings Bioinform. 22(5) (2021) - [j38]Zhuohan Yu, Chuang Bian, Genggeng Liu, Shixiong Zhang, Ka-Chun Wong, Xiangtao Li:
Elucidating transcriptomic profiles from single-cell RNA sequencing data using nature-inspired compressed sensing. Briefings Bioinform. 22(5) (2021) - [j37]Zilong Hou, Yuning Yang, Hui Li, Ka-Chun Wong, Xiangtao Li:
iDeepSubMito: identification of protein submitochondrial localization with deep learning. Briefings Bioinform. 22(6) (2021) - [j36]Saifur Rahaman, Xiangtao Li, Jun Yu, Ka-Chun Wong:
CancerEMC: frontline non-invasive cancer screening from circulating protein biomarkers and mutations in cell-free DNA. Bioinform. 37(19): 3319-3327 (2021) - [j35]Yunhe Wang, Zhiqiang Ma, Ka-Chun Wong, Xiangtao Li:
Evolving Multiobjective Cancer Subtype Diagnosis From Cancer Gene Expression Data. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2431-2444 (2021) - [j34]Xiangtao Li, Shixiong Zhang, Ka-Chun Wong:
Evolving Transcriptomic Profiles From Single-Cell RNA-Seq Data Using Nature-Inspired Multiobjective Optimization. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2445-2458 (2021) - [j33]Shixiong Zhang, Xiangtao Li, Qiuzhen Lin, Ka-Chun Wong:
Nature-Inspired Compressed Sensing for Transcriptomic Profiling From Random Composite Measurements. IEEE Trans. Cybern. 51(9): 4476-4487 (2021) - [j32]Xiangtao Li, Shixiong Zhang, Ka-Chun Wong:
Multiobjective Genome-Wide RNA-Binding Event Identification From CLIP-Seq Data. IEEE Trans. Cybern. 51(12): 5811-5824 (2021) - [c7]Hiu-Man Wong, Xingjian Chen, Hiu-Hin Tam, Jiecong Lin, Shixiong Zhang, Shankai Yan, Xiangtao Li, Ka-Chun Wong:
Feature Selection and Feature Extraction: Highlights. ISMSI 2021: 49-53 - [i3]Lei Huang, Jiecong Lin, Xiangtao Li, Linqi Song, Ka-Chun Wong:
EGFI: Drug-Drug Interaction Extraction and Generation with Fusion of Enriched Entity and Sentence Information. CoRR abs/2101.09914 (2021) - [i2]Xubin Wang, Yunhe Wang, Ka-Chun Wong, Xiangtao Li:
A Self-adaptive Weighted Differential Evolution Approach for Large-scale Feature Selection. CoRR abs/2110.14166 (2021) - 2020
- [j31]Yunhe Wang, Zhiqiang Ma, Ka-Chun Wong, Xiangtao Li:
Nature-inspired multiobjective patient stratification from cancer gene expression data. Inf. Sci. 526: 245-262 (2020) - [j30]Yunhe Wang, Shaochuan Li, Lei Wang, Zhiqiang Ma, Xiangtao Li:
Cancer molecular subtype classification from hypervolume-based discrete evolutionary optimization. Neural Comput. Appl. 32(19): 15489-15502 (2020) - [j29]Xiangtao Li, Shixiong Zhang, Ka-Chun Wong:
Nature-Inspired Multiobjective Epistasis Elucidation from Genome-Wide Association Studies. IEEE ACM Trans. Comput. Biol. Bioinform. 17(1): 226-237 (2020) - [j28]Ka-Chun Wong, Shankai Yan, Qiuzhen Lin, Xiangtao Li, Chengbin Peng:
Deleterious Non-Synonymous Single Nucleotide Polymorphism Predictions on Human Transcription Factors. IEEE ACM Trans. Comput. Biol. Bioinform. 17(1): 327-333 (2020) - [j27]Xiangtao Li, Ka-Chun Wong:
Single-Cell RNA Sequencing Data Interpretation by Evolutionary Multiobjective Clustering. IEEE ACM Trans. Comput. Biol. Bioinform. 17(5): 1773-1784 (2020) - [i1]Shixiong Zhang, Xiangtao Li, Qiuzhen Lin, Ka-Chun Wong:
Review of Single-cell RNA-seq Data Clustering for Cell Type Identification and Characterization. CoRR abs/2001.01006 (2020)
2010 – 2019
- 2019
- [j26]Shixiong Zhang, Xiangtao Li, Qiuzhen Lin, Ka-Chun Wong:
Synergizing CRISPR/Cas9 off-target predictions for ensemble insights and practical applications. Bioinform. 35(7): 1108-1115 (2019) - [j25]Xiangtao Li, Shixiong Zhang, Ka-Chun Wong:
Single-cell RNA-seq interpretations using evolutionary multiobjective ensemble pruning. Bioinform. 35(16): 2809-2817 (2019) - [j24]Ka-Chun Wong, Jiao Zhang, Shankai Yan, Xiangtao Li, Qiuzhen Lin, Sam Kwong, Cheng Liang:
DNA Sequencing Technologies: Sequencing Data Protocols and Bioinformatics Tools. ACM Comput. Surv. 52(5): 98:1-98:30 (2019) - [j23]Xiangtao Li, Ka-Chun Wong:
Elucidating Genome-Wide Protein-RNA Interactions Using Differential Evolution. IEEE ACM Trans. Comput. Biol. Bioinform. 16(1): 272-282 (2019) - [j22]Xiangtao Li, Ka-Chun Wong:
Evolutionary Multiobjective Clustering and Its Applications to Patient Stratification. IEEE Trans. Cybern. 49(5): 1680-1693 (2019) - 2018
- [j21]Xiangtao Li, Ka-Chun Wong:
A Comparative Study for Identifying the Chromosome-Wide Spatial Clusters from High-Throughput Chromatin Conformation Capture Data. IEEE ACM Trans. Comput. Biol. Bioinform. 15(3): 774-787 (2018) - [j20]Xiangtao Li, Ka-Chun Wong:
Multiobjective Patient Stratification Using Evolutionary Multiobjective Optimization. IEEE J. Biomed. Health Informatics 22(5): 1619-1629 (2018) - [c6]Edem Ibragimov, Hong Jiang, Pushui Xu, Xiangtao Li:
Coherent Analog Low Power, Small Size 400/200/100Gb/s Receiver Based on Bipolar SiGe Technology. OFC 2018: 1-3 - 2017
- [j19]Yunhe Wang, Xiangtao Li:
A Hybrid Chaotic Biogeography Based Optimization for the Sequence Dependent Setup Times Flowshop Scheduling Problem With Weighted Tardiness Objective. IEEE Access 5: 26046-26062 (2017) - [j18]Xiangtao Li, Shijing Ma, Jiehua Hu:
Multi-search differential evolution algorithm. Appl. Intell. 47(1): 231-256 (2017) - [j17]Xin Zhang, Xiangtao Li, Jianan Wang:
Local search algorithm with path relinking for single batch-processing machine scheduling problem. Neural Comput. Appl. 28(S-1): 313-326 (2017) - [j16]Xiangtao Li, Shijing Ma:
Multiobjective Discrete Artificial Bee Colony Algorithm for Multiobjective Permutation Flow Shop Scheduling Problem With Sequence Dependent Setup Times. IEEE Trans. Engineering Management 64(2): 149-165 (2017) - 2016
- [j15]Xiangtao Li, Shijing Ma:
Multi-Objective Memetic Search Algorithm for Multi-Objective Permutation Flow Shop Scheduling Problem. IEEE Access 4: 2154-2165 (2016) - [j14]Xiangtao Li, Shijing Ma, Yunhe Wang:
Multi-Population Based Ensemble Mutation Method for Single Objective Bilevel Optimization Problem. IEEE Access 4: 7262-7274 (2016) - [j13]Xiangtao Li, Minghao Yin:
Modified differential evolution with self-adaptive parameters method. J. Comb. Optim. 31(2): 546-576 (2016) - [j12]Xiangtao Li, Minghao Yin:
A particle swarm inspired cuckoo search algorithm for real parameter optimization. Soft Comput. 20(4): 1389-1413 (2016) - [c5]Xiangtao Li, Shijing Ma, Yunhe Wang:
BAMOKNN: A novel computational method for predicting the apoptosis protein locations. BIBM 2016: 743-746 - 2015
- [j11]Xiangtao Li, Minghao Yin:
Modified cuckoo search algorithm with self adaptive parameter method. Inf. Sci. 298: 80-97 (2015) - [j10]Xiangtao Li, Mingjie Li:
Multiobjective Local Search Algorithm-Based Decomposition for Multiobjective Permutation Flow Shop Scheduling Problem. IEEE Trans. Engineering Management 62(4): 544-557 (2015) - [c4]Xiangtao Li, Xin Zhang, Minghao Yin, Jianan Wang:
A genetic algorithm for the distributed assembly permutation flowshop scheduling problem. CEC 2015: 3096-3101 - 2014
- [j9]Xiangtao Li, Minghao Yin:
Self-adaptive constrained artificial bee colony for constrained numerical optimization. Neural Comput. Appl. 24(3-4): 723-734 (2014) - [j8]Xiangtao Li, Jianan Wang, Minghao Yin:
Enhancing the performance of cuckoo search algorithm using orthogonal learning method. Neural Comput. Appl. 24(6): 1233-1247 (2014) - [j7]Xiangtao Li, Jie Zhang, Minghao Yin:
Animal migration optimization: an optimization algorithm inspired by animal migration behavior. Neural Comput. Appl. 24(7-8): 1867-1877 (2014) - 2013
- [j6]Xiangtao Li, Minghao Yin:
An opposition-based differential evolution algorithm for permutation flow shop scheduling based on diversity measure. Adv. Eng. Softw. 55: 10-31 (2013) - 2012
- [j5]Xiangtao Li, Minghao Yin:
Multi-operator based biogeography based optimization with mutation for global numerical optimization. Comput. Math. Appl. 64(9): 2833-2844 (2012) - [j4]Junping Zhou, Minghao Yin, Xiangtao Li, Jinyan Wang:
Phase Transitions of EXPSPACE-Complete Problems: a Further Step. Int. J. Found. Comput. Sci. 23(1): 173-184 (2012) - [j3]Xiangtao Li, Minghao Yin:
Optimal synthesis of linear antenna array with composite differential evolution algorithm. Sci. Iran. 19(6): 1780-1787 (2012) - 2011
- [j2]Xiangtao Li, Jinyan Wang, Junping Zhou, Minghao Yin:
A perturb biogeography based optimization with mutation for global numerical optimization. Appl. Math. Comput. 218(2): 598-609 (2011) - [j1]Minghao Yin, Yanmei Hu, Fengqin Yang, Xiangtao Li, Wenxiang Gu:
A novel hybrid K-harmonic means and gravitational search algorithm approach for clustering. Expert Syst. Appl. 38(8): 9319-9324 (2011) - 2010
- [c3]Xiangtao Li, Jianan Wang, Junping Zhou, Minghao Yin:
An effective GSA based memetic algorithm for permutation flow shop scheduling. IEEE Congress on Evolutionary Computation 2010: 1-6
2000 – 2009
- 2006
- [c2]Xiangtao Li, Wei-Min Lance Kuo, Yuan Lu, John D. Cressler:
A 20 GS/sec Analog-to-Digital Sigma-Delta Modulator in SiGe HBT Technology. CICC 2006: 221-224 - 2005
- [c1]Yevgen Borokhovych, Hans Gustat, Bernd Tillack, Bernd Heinemann, Yuan Lu, Wei-Min Lance Kuo, Xiangtao Li, Ramkumar Krithivasan, John D. Cressler:
A low-power, 10GS/s track-and-hold amplifier in SiGe BiCMOS technology. ESSCIRC 2005: 263-266
Coauthor Index
[j71] [j70] [j69] [j67] [c10] [i4] [j66] [j65] [j64] [j60] [c9] [j59] [j58] [j57] [j56] [j55] [j54] [j53] [j52] [j51] [j50] [j49] [j47] [j46] [j45] [j44] [j43] [c8] [j42] [j41] [j40] [j39] [j38] [j37] [j36] [j35] [j34] [j33] [j32] [c7] [i3] [i2] [j31] [j29] [j28] [j27] [i1] [j26] [j25] [j24] [j23] [j22] [j21] [j20]
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