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Jun Xia 0001
Person information
- affiliation: Zhejiang University, Hangzhou, China
- affiliation: Westlake University, School of Engineering, AI Lab, Hangzhou, China
Other persons with the same name
- Jun Xia — disambiguation page
- Jun Xia 0002 — Shenzhen University, First Affiliated Hospital of Shenzhen University, Department of Radiology, Shenzhen, China
- Jun Xia 0003 — East China Normal University, Software Engineering Institute, Shanghai Key Lab of Trustworthy Computing, Shanghai, China
- Jun Xia 0004 — Southeast University, School of Electronic Science and Engineering, Joint International Research Laboratory of Information Display and Visualization, Nanjing, China
- Jun Xia 0005 — State University of New York, University at Buffalo, Department of Biomedical Engineering, Buffalo, NY, USA (and 2 more)
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2020 – today
- 2024
- [j2]Jun Xia, Haitao Lin, Yongjie Xu, Cheng Tan, Lirong Wu, Siyuan Li, Stan Z. Li:
GNN Cleaner: Label Cleaner for Graph Structured Data. IEEE Trans. Knowl. Data Eng. 36(2): 640-651 (2024) - [c25]Cheng Tan, Zhangyang Gao, Lirong Wu, Jun Xia, Jiangbin Zheng, Xihong Yang, Yue Liu, Bozhen Hu, Stan Z. Li:
Cross-Gate MLP with Protein Complex Invariant Embedding Is a One-Shot Antibody Designer. AAAI 2024: 15222-15230 - [c24]Jun Xia, Shaorong Chen, Yue Liu, Zhangyang Gao, Jiangbin Zheng, Xihong Yang, Stan Z. Li:
DiscoGNN: A Sample-Efficient Framework for Self-Supervised Graph Representation Learning. ICDE 2024: 2876-2888 - [c23]Zhangyang Gao, Cheng Tan, Xingran Chen, Yijie Zhang, Jun Xia, Siyuan Li, Stan Z. Li:
KW-Design: Pushing the Limit of Protein Design via Knowledge Refinement. ICLR 2024 - [c22]Cheng Tan, Zhangyang Gao, Hanqun Cao, Xingran Chen, Ge Wang, Lirong Wu, Jun Xia, Jiangbin Zheng, Stan Z. Li:
Deciphering RNA Secondary Structure Prediction: A Probabilistic K-Rook Matching Perspective. ICML 2024 - [c21]Zhangyang Gao, Daize Dong, Cheng Tan, Jun Xia, Bozhen Hu, Stan Z. Li:
A Graph is Worth K Words: Euclideanizing Graph using Pure Transformer. ICML 2024 - [i27]Siyuan Li, Luyuan Zhang, Zedong Wang, Di Wu, Lirong Wu, Zicheng Liu, Jun Xia, Cheng Tan, Yang Liu, Baigui Sun, Stan Z. Li:
Masked Modeling for Self-supervised Representation Learning on Vision and Beyond. CoRR abs/2401.00897 (2024) - [i26]Ge Wang, Zelin Zang, Jiangbin Zheng, Jun Xia, Stan Z. Li:
Graph-level Protein Representation Learning by Structure Knowledge Refinement. CoRR abs/2401.02713 (2024) - [i25]Bozhen Hu, Zelin Zang, Jun Xia, Lirong Wu, Cheng Tan, Stan Z. Li:
Deep Manifold Graph Auto-Encoder for Attributed Graph Embedding. CoRR abs/2401.06727 (2024) - [i24]Zhangyang Gao, Daize Dong, Cheng Tan, Jun Xia, Bozhen Hu, Stan Z. Li:
A Graph is Worth K Words: Euclideanizing Graph using Pure Transformer. CoRR abs/2402.02464 (2024) - [i23]Jun Xia, Shaorong Chen, Jingbo Zhou, Tianze Ling, Wenjie Du, Sizhe Liu, Stan Z. Li:
AdaNovo: Adaptive \emph{De Novo} Peptide Sequencing with Conditional Mutual Information. CoRR abs/2403.07013 (2024) - [i22]Jingbo Zhou, Shaorong Chen, Jun Xia, Sizhe Liu, Tianze Ling, Wenjie Du, Yue Liu, Jianwei Yin, Stan Z. Li:
NovoBench: Benchmarking Deep Learning-based De Novo Peptide Sequencing Methods in Proteomics. CoRR abs/2406.11906 (2024) - [i21]Sizhe Liu, Jun Xia, Lecheng Zhang, Yuchen Liu, Yue Liu, Wenjie Du, Zhangyang Gao, Bozhen Hu, Cheng Tan, Hongxin Xiang, Stan Z. Li:
FlexMol: A Flexible Toolkit for Benchmarking Molecular Relational Learning. CoRR abs/2410.15010 (2024) - [i20]Cheng Tan, Zhenxiao Cao, Zhangyang Gao, Lirong Wu, Siyuan Li, Yufei Huang, Jun Xia, Bozhen Hu, Stan Z. Li:
MeToken: Uniform Micro-environment Token Boosts Post-Translational Modification Prediction. CoRR abs/2411.01856 (2024) - 2023
- [c20]Cheng Tan, Zhangyang Gao, Lirong Wu, Yongjie Xu, Jun Xia, Siyuan Li, Stan Z. Li:
Temporal Attention Unit: Towards Efficient Spatiotemporal Predictive Learning. CVPR 2023: 18770-18782 - [c19]Jiangbin Zheng, Yile Wang, Cheng Tan, Siyuan Li, Ge Wang, Jun Xia, Yidong Chen, Stan Z. Li:
CVT-SLR: Contrastive Visual-Textual Transformation for Sign Language Recognition with Variational Alignment. CVPR 2023: 23141-23150 - [c18]Bozhen Hu, Zelin Zang, Jun Xia, Lirong Wu, Cheng Tan, Stan Z. Li:
Deep Manifold Graph Auto-Encoder For Attributed Graph Embedding. ICASSP 2023: 1-5 - [c17]Cheng Tan, Zhangyang Gao, Jun Xia, Bozhen Hu, Stan Z. Li:
Global-Context Aware Generative Protein Design. ICASSP 2023: 1-5 - [c16]Jun Xia, Ge Wang, Bozhen Hu, Cheng Tan, Jiangbin Zheng, Yongjie Xu, Stan Z. Li:
Wordreg: Mitigating the Gap between Training and Inference with Worst-Case Drop Regularization. ICASSP 2023: 1-5 - [c15]Jun Xia, Chengshuai Zhao, Bozhen Hu, Zhangyang Gao, Cheng Tan, Yue Liu, Siyuan Li, Stan Z. Li:
Mole-BERT: Rethinking Pre-training Graph Neural Networks for Molecules. ICLR 2023 - [c14]Yue Liu, Ke Liang, Jun Xia, Sihang Zhou, Xihong Yang, Xinwang Liu, Stan Z. Li:
Dink-Net: Neural Clustering on Large Graphs. ICML 2023: 21794-21812 - [c13]Jun Xia, Yanqiao Zhu, Yuanqi Du, Stan Z. Li:
A Systematic Survey of Chemical Pre-trained Models. IJCAI 2023: 6787-6795 - [c12]Xihong Yang, Cheng Tan, Yue Liu, Ke Liang, Siwei Wang, Sihang Zhou, Jun Xia, Stan Z. Li, Xinwang Liu, En Zhu:
CONVERT: Contrastive Graph Clustering with Reliable Augmentation. ACM Multimedia 2023: 319-327 - [c11]Yue Liu, Ke Liang, Jun Xia, Xihong Yang, Sihang Zhou, Meng Liu, Xinwang Liu, Stan Z. Li:
Reinforcement Graph Clustering with Unknown Cluster Number. ACM Multimedia 2023: 3528-3537 - [c10]Jun Xia, Lecheng Zhang, Xiao Zhu, Yue Liu, Zhangyang Gao, Bozhen Hu, Cheng Tan, Jiangbin Zheng, Siyuan Li, Stan Z. Li:
Understanding the Limitations of Deep Models for Molecular property prediction: Insights and Solutions. NeurIPS 2023 - [c9]Zhangyang Gao, Cheng Tan, Jun Xia, Stan Z. Li:
Co-supervised Pre-training of Pocket and Ligand. ECML/PKDD (1) 2023: 405-421 - [i19]Jiangbin Zheng, Yile Wang, Cheng Tan, Siyuan Li, Ge Wang, Jun Xia, Yidong Chen, Stan Z. Li:
CVT-SLR: Contrastive Visual-Textual Transformation for Sign Language Recognition with Variational Alignment. CoRR abs/2303.05725 (2023) - [i18]Yue Liu, Ke Liang, Jun Xia, Sihang Zhou, Xihong Yang, Xinwang Liu, Stan Z. Li:
Dink-Net: Neural Clustering on Large Graphs. CoRR abs/2305.18405 (2023) - [i17]Jun Xia, Lecheng Zhang, Xiao Zhu, Stan Z. Li:
Why Deep Models Often cannot Beat Non-deep Counterparts on Molecular Property Prediction? CoRR abs/2306.17702 (2023) - [i16]Yue Liu, Ke Liang, Jun Xia, Xihong Yang, Sihang Zhou, Meng Liu, Xinwang Liu, Stan Z. Li:
Reinforcement Graph Clustering with Unknown Cluster Number. CoRR abs/2308.06827 (2023) - [i15]Xihong Yang, Cheng Tan, Yue Liu, Ke Liang, Siwei Wang, Sihang Zhou, Jun Xia, Stan Z. Li, Xinwang Liu, En Zhu:
CONVERT: Contrastive Graph Clustering with Reliable Augmentation. CoRR abs/2308.08963 (2023) - [i14]Cheng Tan, Jue Wang, Zhangyang Gao, Siyuan Li, Lirong Wu, Jun Xia, Stan Z. Li:
Revisiting the Temporal Modeling in Spatio-Temporal Predictive Learning under A Unified View. CoRR abs/2310.05829 (2023) - [i13]Jiangbin Zheng, Siyuan Li, Yufei Huang, Zhangyang Gao, Cheng Tan, Bozhen Hu, Jun Xia, Ge Wang, Stan Z. Li:
MMDesign: Multi-Modality Transfer Learning for Generative Protein Design. CoRR abs/2312.06297 (2023) - 2022
- [j1]Lirong Wu, Haitao Lin, Jun Xia, Cheng Tan, Stan Z. Li:
Multi-level disentanglement graph neural network. Neural Comput. Appl. 34(11): 9087-9101 (2022) - [c8]Jiangbin Zheng, Yile Wang, Ge Wang, Jun Xia, Yufei Huang, Guojiang Zhao, Yue Zhang, Stan Z. Li:
Using Context-to-Vector with Graph Retrofitting to Improve Word Embeddings. ACL (1) 2022: 8154-8163 - [c7]Jun Xia, Cheng Tan, Lirong Wu, Yongjie Xu, Stan Z. Li:
OT Cleaner: Label Correction as Optimal Transport. ICASSP 2022: 3953-3957 - [c6]Jun Xia, Lirong Wu, Ge Wang, Jintao Chen, Stan Z. Li:
ProGCL: Rethinking Hard Negative Mining in Graph Contrastive Learning. ICML 2022: 24332-24346 - [c5]Lirong Wu, Jun Xia, Zhangyang Gao, Haitao Lin, Cheng Tan, Stan Z. Li:
GraphMixup: Improving Class-Imbalanced Node Classification by Reinforcement Mixup and Self-supervised Context Prediction. ECML/PKDD (4) 2022: 519-535 - [c4]Lirong Wu, Zicheng Liu, Jun Xia, Zelin Zang, Siyuan Li, Stan Z. Li:
Generalized Clustering and Multi-Manifold Learning with Geometric Structure Preservation. WACV 2022: 1668-1676 - [c3]Jun Xia, Lirong Wu, Jintao Chen, Bozhen Hu, Stan Z. Li:
SimGRACE: A Simple Framework for Graph Contrastive Learning without Data Augmentation. WWW 2022: 1070-1079 - [i12]Jun Xia, Lirong Wu, Jintao Chen, Bozhen Hu, Stan Z. Li:
SimGRACE: A Simple Framework for Graph Contrastive Learning without Data Augmentation. CoRR abs/2202.03104 (2022) - [i11]Jun Xia, Yanqiao Zhu, Yuanqi Du, Stan Z. Li:
A Survey of Pretraining on Graphs: Taxonomy, Methods, and Applications. CoRR abs/2202.07893 (2022) - [i10]Cheng Tan, Zhangyang Gao, Jun Xia, Stan Z. Li:
Generative De Novo Protein Design with Global Context. CoRR abs/2204.10673 (2022) - [i9]Lirong Wu, Jun Xia, Haitao Lin, Zhangyang Gao, Zicheng Liu, Guojiang Zhao, Stan Z. Li:
Teaching Yourself: Graph Self-Distillation on Neighborhood for Node Classification. CoRR abs/2210.02097 (2022) - [i8]Jun Xia, Yanqiao Zhu, Yuanqi Du, Yue Liu, Stan Z. Li:
A Systematic Survey of Molecular Pre-trained Models. CoRR abs/2210.16484 (2022) - [i7]Jiangbin Zheng, Yile Wang, Ge Wang, Jun Xia, Yufei Huang, Guojiang Zhao, Yue Zhang, Stan Z. Li:
Using Context-to-Vector with Graph Retrofitting to Improve Word Embeddings. CoRR abs/2210.16848 (2022) - [i6]Yue Liu, Jun Xia, Sihang Zhou, Siwei Wang, Xifeng Guo, Xihong Yang, Ke Liang, Wenxuan Tu, Stan Z. Li, Xinwang Liu:
A Survey of Deep Graph Clustering: Taxonomy, Challenge, and Application. CoRR abs/2211.12875 (2022) - [i5]Bozhen Hu, Jun Xia, Jiangbin Zheng, Cheng Tan, Yufei Huang, Yongjie Xu, Stan Z. Li:
Protein Language Models and Structure Prediction: Connection and Progression. CoRR abs/2211.16742 (2022) - 2021
- [c2]Cheng Tan, Jun Xia, Lirong Wu, Stan Z. Li:
Co-learning: Learning from Noisy Labels with Self-supervision. ACM Multimedia 2021: 1405-1413 - [c1]Siyuan Li, Haitao Lin, Zelin Zang, Lirong Wu, Jun Xia, Stan Z. Li:
Invertible Manifold Learning for Dimension Reduction. ECML/PKDD (3) 2021: 713-728 - [i4]Cheng Tan, Jun Xia, Lirong Wu, Stan Z. Li:
Co-learning: Learning from Noisy Labels with Self-supervision. CoRR abs/2108.04063 (2021) - [i3]Jun Xia, Lirong Wu, Jintao Chen, Ge Wang, Stan Z. Li:
Debiased Graph Contrastive Learning. CoRR abs/2110.02027 (2021) - 2020
- [i2]Lirong Wu, Zicheng Liu, Zelin Zang, Jun Xia, Siyuan Li, Stan Z. Li:
Deep Clustering and Representation Learning that Preserves Geometric Structures. CoRR abs/2009.09590 (2020) - [i1]Siyuan Li, Haitao Lin, Zelin Zang, Lirong Wu, Jun Xia, Stan Z. Li:
Invertible Manifold Learning for Dimension Reduction. CoRR abs/2010.04012 (2020)
Coauthor Index
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