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2020 – today
- 2024
[j24]Hunter N. B. Moseley, Philippe Rocca-Serra, Reza M. Salek, Masanori Arita, Emma Schymanski:
InChI isotopologue and isotopomer specifications. J. Cheminformatics 16(1): 54 (2024)- 2021
- [j23]Masanori Arita
, Ilene Karsch-Mizrachi, Guy Cochrane:
The international nucleotide sequence database collaboration. Nucleic Acids Res. 49(Database-Issue): D121-D124 (2021) - 2020
- [c16]Jun-ichi Onami, Koji Sakaguchi, Masanori Arita, Kazutsuna Yamaji:
Development of the portal site of COVID-19 data in Japan: poster abstract. SenSys 2020: 756-757
2010 – 2019
- 2019
- [j22]Mehwish Noureen, Ipputa Tada, Takeshi Kawashima, Masanori Arita:
Rearrangement analysis of multiple bacterial genomes. BMC Bioinform. 20-S(23): 631 (2019) - 2018
- [j21]Maria Satti, Yasuhiro Tanizawa, Akihito Endo, Masanori Arita:
Comparative analysis of probiotic bacteria based on a new definition of core genome. J. Bioinform. Comput. Biol. 16(3): 1840012:1-1840012:17 (2018) - 2017
- [j20]Ipputa Tada, Yasuhiro Tanizawa, Masanori Arita:
Visualization of consensus genome structure without using a reference genome. BMC Genom. 18(S2) (2017) - [j19]Hiroshi Tsugawa, Kazutaka Ikeda, Wataru Tanaka, Yuya Senoo, Makoto Arita, Masanori Arita:
Comprehensive identification of sphingolipid species by in silico retention time and tandem mass spectral library. J. Cheminformatics 9(1): 19:1-19:12 (2017) - [i1]Masanori Arita, Sebastian Böcker, Steffen Neumann:
Computational Metabolomics (NII Shonan Meeting 2017-3). NII Shonan Meet. Rep. 2017 (2017) - 2016
- [j18]Kansuporn Sriyudthsak, Ramon Francisco Pacquiao Mejia, Masanori Arita, Masami Y. Hirai:
PASMet: a web-based platform for prediction, modelling and analyses of metabolic systems. Nucleic Acids Res. 44(Webserver-Issue): W205-W211 (2016) - 2014
- [j17]Hiroshi Tsugawa, Mitsuhiro Kanazawa, Atsushi Ogiwara, Masanori Arita:
MRMPROBS suite for metabolomics using large-scale MRM assays. Bioinform. 30(16): 2379-2380 (2014) - 2012
- [p1]Masanori Arita, Masami Hagiya, Masahiro Takinoue, Fumiaki Tanaka:
DNA Memory. Handbook of Natural Computing 2012: 1281-1318 - 2011
- [j16]Hiroshi Tsugawa, Yuki Tsujimot, Masanori Arita, Takeshi Bamba, Eiichiro Fukusaki:
GC/MS Based Metabolomics: Development of a Data Mining System for Metabolite Identification by using Soft Independent Modeling of Class Analogy (SIMCA). BMC Bioinform. 12: 131 (2011) - [j15]Che-Wei Chang, Ping-Chiang Lyu, Masanori Arita:
Reconstructing phylogeny from metabolic substrate-product relationships. BMC Bioinform. 12(S-1): S27 (2011) - [j14]Atsushi Fukushima, Miyako Kusano, Henning Redestig, Masanori Arita, Kazuki Saito:
Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach. BMC Syst. Biol. 5: 1 (2011) - [j13]Henning Redestig, Miyako Kusano, Kaworu Ebana, Makoto Kobayashi, Akira Oikawa, Yozo Okazaki, Fumio Matsuda, Masanori Arita, Naoko Fujita, Kazuki Saito:
Exploring molecular backgrounds of quality traits in rice by predictive models based on high-coverage metabolomics. BMC Syst. Biol. 5: 176 (2011) - 2010
- [j12]Henning Redestig, Miyako Kusano, Atsushi Fukushima, Fumio Matsuda, Kazuki Saito, Masanori Arita:
Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis. BMC Bioinform. 11: 214 (2010)
2000 – 2009
- 2009
- [j11]Masanori Arita:
A pitfall of wiki solution for biological databases. Briefings Bioinform. 10(3): 295-296 (2009) - [c15]Masanori Arita, Kazuhiro Suwa, Miwa Yoshimoto, Aki Hirai, Shigehiko Kanaya:
Ontology Checking and Integration of Crude-Drug and Kampo Information. BMEI 2009: 1-4 - [c14]Hisayuki Horai, Masanori Arita, Yuya Ojima, Yoshito Nihei, Shigehiko Kanaya, Takeshi Nishioka:
Traceable Analysis of Multiple-Stage Mass Spectra through Precursor-Product Annotations. GCB 2009: 173-178 - 2008
- [j10]Masanori Arita, Kazuhiro Suwa:
Search extension transforms Wiki into a relational system: A case for flavonoid metabolite database. BioData Min. 1 (2008) - [j9]Shigeru Sato, Masanori Arita, Tomoyoshi Soga, Takaaki Nishioka, Masaru Tomita:
Time-resolved metabolomics reveals metabolic modulation in rice foliage. BMC Syst. Biol. 2: 51 (2008) - [c13]Hisayuki Horai, Masanori Arita, Takaaki Nishioka:
Comparison of ESI-MS Spectra in MassBank Database. BMEI (2) 2008: 853-857 - 2007
- [j8]Miyako Kusano, Atsushi Fukushima, Masanori Arita, Pär Jonsson, Thomas Moritz, Makoto Kobayashi, Naomi Hayashi, Takayuki Tohge, Kazuki Saito:
Unbiased characterization of genotype-dependent metabolic regulations by metabolomic approach in Arabidopsis thaliana. BMC Syst. Biol. 1: 53 (2007) - [j7]Hisashi Tuji, Md. Altaf-Ul-Amin, Masanori Arita, Hirokazu Nishio, Yoko Shinbo, Ken Kurokawa, Shigehiko Kanaya:
Comparison of Protein Complexes Predicted from PPI Networks by DPClus and Newman Clustering Algorithms. Inf. Media Technol. 2(1): 98-108 (2007) - [c12]Kinya Okada, Kiyoshi Asai, Masanori Arita:
Flow Model of the Protein-protein Interaction Network for Finding Credible Interactions. APBC 2007: 317-326 - 2006
- [j6]Hideki Nagasaki, Masanori Arita, Tatsuya Nishizawa, Makiko Suwa, Osamu Gotoh:
Automated classification of alternative splicing and transcriptional initiation and construction of visual database of classified patterns. Bioinform. 22(10): 1211-1216 (2006) - 2005
- [c11]Hiroyuki Oka, Masanori Arita:
Searching Similar Modules in Protein Interaction Netwo. ICDE Workshops 2005: 1158 - 2004
- [j5]Masanori Arita:
Comma-free design for DNA words. Commun. ACM 47(5): 99-100 (2004) - [c10]Masanori Arita:
Writing Information into DNA. Aspects of Molecular Computing 2004: 23-35 - 2003
- [j4]Shinichi Kikuchi, Daisuke Tominaga, Masanori Arita, Katsutoshi Takahashi, Masaru Tomita:
Dynamic modeling of genetic networks using genetic algorithm and S-system. Bioinform. 19(5): 643-650 (2003) - 2002
- [j3]Masanori Arita, Satoshi Kobayashi:
DNA Sequence Design Using Templates. New Gener. Comput. 20(3): 263-278 (2002) - [c9]Satoshi Kobayashi, Tomohiro Kondo, Masanori Arita:
On Template Method for DNA Sequence Design. DNA 2002: 205-214 - [c8]Masanori Arita, Koji Tsuda, Kiyoshi Asai:
Modeling splicing sites with pairwise correlations. ECCB 2002: 27-34 - 2000
- [j2]Masanori Arita:
Metabolic reconstruction using shortest paths. Simul. Pract. Theory 8(1-2): 109-125 (2000) - [c7]Ken Komiya, Kensaku Sakamoto, Hidetaka Gouzu, Shigeyuki Yokoyama, Masanori Arita, Akio Nishikawa, Masami Hagiya:
Successive State Transitions with I/O Interface by Molecules. DNA Computing 2000: 17-26 - [c6]Masanori Arita, Kiyoshi Asai, Takaaki Nishioka:
Reconstructing Metabolic Pathways with New Enzyme Classification. German Conference on Bioinformatics 2000: 99-106 - [c5]Masanori Arita, Akio Nishikawa, Masami Hagiya, Ken Komiya, Hidetaka Gouzu, Kensaku Sakamoto:
Improving Sequence Design for DNA Computing. GECCO 2000: 875-882
1990 – 1999
- 1997
- [c4]Nobuhiko Morimoto, Masanori Arita, Akira Suyama:
Stepwise Generation of Hamiltonian Path with Molecules. BCEC 1997: 184-192 - [c3]Masami Hagiya, Masanori Arita, Daisuke Kiga, Kensaku Sakamoto, Shigeyuki Yokoyama:
Towards parallel evaluation and learning of Boolean μ-formulas with molecules. DNA Based Computers 1997: 57-72 - [c2]Nobuhiko Morimoto, Masanori Arita, Akira Suyama:
Solid phase DNA solution to the Hamiltonian path problem. DNA Based Computers 1997: 193-206 - [c1]Masanori Arita, Masami Hagiya, Akira Suyama:
Joining and rotating data with molecules. ICEC 1997: 243-248 - 1995
- [j1]Tomoaki Shimada, Masami Hagiya, Masanori Arita, Shin-ya Nishizaki, Chew Lim Tan:
Knowledge-Based Simulation of Regulatory Action in lambda phage. Int. J. Artif. Intell. Tools 4(4): 511-524 (1995)
Coauthor Index
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