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ORCIDAdam T. Zemla
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2020 – today
- 2023
[j13]Garrett A. Stevenson
, Dan Kirshner, Brian J. Bennion, Yue Yang, Xiaohua Zhang, Adam T. Zemla, Marisa W. Torres, Aidan Epstein, Derek Jones, Hyojin Kim, W. F. Drew Bennett, Sergio Ernesto Wong, Jonathan E. Allen, Felice C. Lightstone:
Clustering Protein Binding Pockets and Identifying Potential Drug Interactions: A Novel Ligand-Based Featurization Method. J. Chem. Inf. Model. 63(21): 6655-6666 (2023)- 2021
- [j12]Derek Jones, Hyojin Kim, Xiaohua Zhang, Adam T. Zemla, Garrett Stevenson, W. F. Drew Bennett, Daniel A. Kirshner, Sergio Ernesto Wong, Felice C. Lightstone, Jonathan E. Allen:
Improved Protein-Ligand Binding Affinity Prediction with Structure-Based Deep Fusion Inference. J. Chem. Inf. Model. 61(4): 1583-1592 (2021) - [c4]Garrett A. Stevenson, Derek Jones, Hyojin Kim, W. F. Drew Bennett, Brian J. Bennion, Monica Borucki, Feliza Bourguet, Aidan Epstein, Magdalena Franco, Brooke Harmon, Stewart He, Max P. Katz, Daniel A. Kirshner, Victoria Lao, Edmond Y. Lau, Jacky Lo, Kevin McLoughlin, Richard Mosesso, Deepa K. Murugesh, Oscar A. Negrete, Edwin A. Saada, Brent Segelke, Maxwell Stefan, Marisa W. Torres, Dina Weilhammer, Sergio Ernesto Wong, Yue Yang, Adam T. Zemla, Xiaohua Zhang, Fangqiang Zhu, Felice C. Lightstone, Jonathan E. Allen:
High-throughput virtual screening of small molecule inhibitors for SARS-CoV-2 protein targets with deep fusion models. SC 2021: 74 - [i2]Garrett A. Stevenson, Derek Jones, Hyojin Kim, W. F. Drew Bennett, Brian J. Bennion, Monica Borucki, Feliza Bourguet, Aidan Epstein, Magdalena Franco, Brooke Harmon, Stewart He, Max P. Katz, Daniel A. Kirshner, Victoria Lao, Edmond Y. Lau, Jacky Lo, Kevin McLoughlin, Richard Mosesso, Deepa K. Murugesh, Oscar A. Negrete, Edwin A. Saada, Brent Segelke, Maxwell Stefan, Marisa W. Torres, Dina Weilhammer, Sergio Ernesto Wong, Yue Yang, Adam T. Zemla, Xiaohua Zhang, Fangqiang Zhu, Felice C. Lightstone, Jonathan E. Allen:
High-Throughput Virtual Screening of Small Molecule Inhibitors for SARS-CoV-2 Protein Targets with Deep Fusion Models. CoRR abs/2104.04547 (2021) - 2020
- [i1]Derek Jones, Hyojin Kim, Xiaohua Zhang, Adam T. Zemla, Garrett Stevenson, William D. Bennett, Dan Kirshner, Sergio Ernesto Wong, Felice C. Lightstone, Jonathan E. Allen:
Improved Protein-ligand Binding Affinity Prediction with Structure-Based Deep Fusion Inference. CoRR abs/2005.07704 (2020)
2010 – 2019
- 2011
- [j11]Adam T. Zemla, Dorothy M. Lang, Tanya Kostova, Raul Andino, Carol L. Ecale Zhou:
StralSV: assessment of sequence variability within similar 3D structures and application to polio RNA-dependent RNA polymerase. BMC Bioinform. 12: 226 (2011) - [j10]Alexis P. Yelton, Brian C. Thomas, Sheri L. Simmons, Paul Wilmes, Adam T. Zemla, Michael P. Thelen, Nicholas Justice, Jillian F. Banfield:
A Semi-Quantitative, Synteny-Based Method to Improve Functional Predictions for Hypothetical and Poorly Annotated Bacterial and Archaeal Genes. PLoS Comput. Biol. 7(10) (2011)
2000 – 2009
- 2009
- [j9]Anu Chakicherla, Carol L. Ecale Zhou, Martha Ligon Dang, Virginia Rodriguez, J. Norman Hansen, Adam T. Zemla:
SpaK/SpaR Two-component System Characterized by a Structure-driven Domain-fusion Method and in Vitro Phosphorylation Studies. PLoS Comput. Biol. 5(6) (2009) - 2007
- [j8]Carol L. Ecale Zhou, Jason Smith, Marisa Lam, Adam T. Zemla, Matthew D. Dyer, Tom Slezak:
MvirDB - a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications. Nucleic Acids Res. 35(Database-Issue): 391-394 (2007) - 2006
- [j7]Carol L. Ecale Zhou, Marisa Lam, Jason Smith, Adam T. Zemla, Matthew D. Dyer, Thomas A. Kuczmarski, Elizabeth A. Vitalis, Thomas R. Slezak:
MannDB - A microbial database of automated protein sequence analyses and evidence integration for protein characterization. BMC Bioinform. 7: 459 (2006) - 2005
- [j6]Carol L. Ecale Zhou, Adam T. Zemla, Diana C. Roe, Malin M. Young, Marisa Lam, Joseph S. Schoeniger, Rod Balhorn:
Computational approaches for identification of conserved/unique binding pockets in the A chain of ricin. Bioinform. 21(14): 3089-3096 (2005) - [j5]Adam T. Zemla, Carol L. Ecale Zhou, Tom Slezak, Tom Kuczmarski, D. Rama, Clinton Torres, D. Sawicka, Daniel Barsky:
AS2TS system for protein structure modeling and analysis. Nucleic Acids Res. 33(Web-Server-Issue): 111-115 (2005) - 2003
- [j4]Tom Slezak, Tom Kuczmarski, Linda L. Ott, Clinton Torres, Dan Medeiros, Jason Smith, Brian Truitt, Nisha Mulakken, Marisa Lam, Elizabeth A. Vitalis, Adam T. Zemla, Carol L. Ecale Zhou, Shea N. Gardner:
Comparative Genomics Tools Applied to Bioterrorism Defence. Briefings Bioinform. 4(2): 133-149 (2003) - [j3]Adam T. Zemla:
LGA: a method for finding 3D similarities in protein structures. Nucleic Acids Res. 31(13): 3370-3374 (2003) - 2002
- [j2]J. Patrick Fitch, Shea N. Gardner, Thomas A. Kuczmarski, Stefan Kurtz, Rich Myers, Linda L. Ott, Thomas R. Slezak, Elizabeth A. Vitalis, Adam T. Zemla, Paula M. McCready:
Rapid development of nucleic acid diagnostics. Proc. IEEE 90(11): 1708-1721 (2002) - 2001
- [j1]Susana Cristobal, Adam T. Zemla, Daniel Fischer, Leszek Rychlewski, Arne Elofsson:
A study of quality measures for protein threading models. BMC Bioinform. 2: 5 (2001)
1990 – 1999
- 1996
- [c3]Jack J. Dongarra, Jeremy Du Croz, Sven Hammarling, Jerzy Wasniewski, Adam T. Zemla:
Lapack for Fortran90 Compiler. HPCN Europe 1996: 826-833 - 1995
- [c2]Jack J. Dongarra, Jeremy Du Croz, Sven Hammarling, Jerzy Wasniewski, Adam T. Zemla:
A Proposal for a Fortran 90 Interface for LAPACK. PARA 1995: 158-165 - 1994
- [c1]Adam T. Zemla:
Wavelet Transforms Computing on PVM. PARA 1994: 534-546
Coauthor Index
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