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ORCIDHai-Feng Chen
Person information
- affiliation: Shanghai Jiao Tong University, China
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2020 – today
- 2024
[j25]Junxi Mu, Zhengxin Li, Bo Zhang, Qi Zhang, Jamshed Iqbal, Abdul Wadood, Ting Wei, Yan Feng, Hai-Feng Chen
:
Graphormer supervised de novo protein design method and function validation. Briefings Bioinform. 25(3) (2024)- [j24]Jinyu Yu, Junxi Mu, Ting Wei, Hai-Feng Chen:
Multi-indicator comparative evaluation for deep learning-based protein sequence design methods. Bioinform. 40(2) (2024) - [j23]Mueed Ur Rahman, Saira Bano, Xiaokun Hong, Ruo-Xu Gu, Hai-Feng Chen:
Early Aggregation Mechanism of SOD128-38 Based on Force Field Parameter of 5-Cyano-Tryptophan. J. Chem. Inf. Model. 64(9): 3942-3952 (2024) - 2023
- [j22]Junjie Zhu, Zhengxin Li, Haowei Tong, Zhouyu Lu, Ningjie Zhang, Ting Wei, Hai-Feng Chen:
Phanto-IDP: compact model for precise intrinsically disordered protein backbone generation and enhanced sampling. Briefings Bioinform. 25(1) (2023) - [j21]Xiaokun Hong, Ningshan Li, Jiyang Lv, Yan Zhang, Jing Li, Jian Zhang, Hai-Feng Chen:
PTMint database of experimentally verified PTM regulation on protein-protein interaction. Bioinform. 39(1) (2023) - [j20]Xiaoyue Ji, Hao Liu, Yangpeng Zhang, Jun Chen, Hai-Feng Chen:
Personal Precise Force Field for Intrinsically Disordered and Ordered Proteins Based on Deep Learning. J. Chem. Inf. Model. 63(1): 362-374 (2023) - [j19]Xiaokun Hong, Kaiyuan Song, Mueed Ur Rahman, Ting Wei, Yan Zhang, Lin-Tai Da, Hai-Feng Chen:
Phosphorylation Regulation Mechanism of β2 Integrin for the Binding of Filamin Revealed by Markov State Model. J. Chem. Inf. Model. 63(2): 605-618 (2023) - [j18]Ge Song, Bozitao Zhong, Bo Zhang, Ashfaq Ur Rehman, Hai-Feng Chen:
Phosphorylation Modification Force Field FB18CMAP Improving Conformation Sampling of Phosphoproteins. J. Chem. Inf. Model. 63(5): 1602-1614 (2023) - [j17]Xiaoyue Ji, Xiaochen Cui, Zhengxin Li, Taeyoung Choi, Ying Wang, Wen Xiao, Yunshuo Zhao, Jinyin Zha, Jian Zhang, Hai-Feng Chen, Zhengtian Yu:
Research and Evaluation of the Allosteric Protein-Specific Force Field Based on a Pre-Training Deep Learning Model. J. Chem. Inf. Model. 63(8): 2456-2468 (2023) - [c1]Hai-Feng Chen, Lv Zhang, Shuai Wang, Shan-Shan Shi:
Development and Application of Offshore Trade Authenticity Verification Platform Based on Blockchain. DSIE 2023: 137-147 - 2022
- [j16]Jun Chen, Hao Liu, Xiaochen Cui, Zhengxin Li, Hai-Feng Chen:
RNA-Specific Force Field Optimization with CMAP and Reweighting. J. Chem. Inf. Model. 62(2): 372-385 (2022) - [j15]Xiaochen Cui, Hao Liu, Hai-Feng Chen:
Polarizable Force Field of Intrinsically Disordered Proteins with CMAP and Reweighting Optimization. J. Chem. Inf. Model. 62(20): 4970-4982 (2022) - 2021
- [j14]Junxi Mu, Hao Liu, Jian Zhang, Ray Luo, Hai-Feng Chen:
Recent Force Field Strategies for Intrinsically Disordered Proteins. J. Chem. Inf. Model. 61(3): 1037-1047 (2021) - [j13]Junxi Mu, Zhengsong Pan, Hai-Feng Chen:
Balanced Solvent Model for Intrinsically Disordered and Ordered Proteins. J. Chem. Inf. Model. 61(10): 5141-5151 (2021) - 2020
- [j12]Dong Song, Hao Liu, Ray Luo, Hai-Feng Chen:
Environment-Specific Force Field for Intrinsically Disordered and Ordered Proteins. J. Chem. Inf. Model. 60(4): 2257-2267 (2020) - [j11]Mueed Ur Rahman, Ashfaq Ur Rehman, Hao Liu, Hai-Feng Chen:
Comparison and Evaluation of Force Fields for Intrinsically Disordered Proteins. J. Chem. Inf. Model. 60(10): 4912-4923 (2020)
2010 – 2019
- 2019
- [j10]Quan Li, Ray Luo, Hai-Feng Chen:
Dynamical important residue network (DIRN): network inference via conformational change. Bioinform. 35(22): 4664-4670 (2019) - [j9]Ashfaq Ur Rehman, Muhammad Tahir Khan, Hao Liu, Abdul Wadood, Shaukat Iqbal Malik, Hai-Feng Chen:
Exploring the Pyrazinamide Drug Resistance Mechanism of Clinical Mutants T370P and W403G in Ribosomal Protein S1 ofMycobacterium tuberculosis. J. Chem. Inf. Model. 59(4): 1584-1597 (2019) - [j8]Ashfaq Ur Rehman, Humaira Rafiq, Mueed Ur Rahman, Jiayi Li, Hao Liu, Shenggan Luo, Taaha Arshad, Abdul Wadood, Hai-Feng Chen:
Gain-of-Function SHP2 E76Q Mutant Rescuing Autoinhibition Mechanism Associated with Juvenile Myelomonocytic Leukemia. J. Chem. Inf. Model. 59(7): 3229-3239 (2019) - [j7]Sheng Yang, Hao Liu, Yangpeng Zhang, Hui Lu, Hai-Feng Chen:
Residue-Specific Force Field Improving the Sample of Intrinsically Disordered Proteins and Folded Proteins. J. Chem. Inf. Model. 59(11): 4793-4805 (2019) - 2018
- [j6]Mueed Ur Rahman, Ashfaq Ur Rehman, Hao Liu, Hai-Feng Chen:
Inhibitory mechanism of 5-bromo-3-indoleacetic acid for non-structural-3 helicase hepatitis C virus with dynamics correlation network analysis. Comput. Biol. Chem. 77: 167-177 (2018) - 2017
- [j5]Wei Ye, Tianle Qian, Hao Liu, Ray Luo, Hai-Feng Chen:
Allosteric Autoinhibition Pathway in Transcription Factor ERG: Dynamics Network and Mutant Experimental Evaluations. J. Chem. Inf. Model. 57(5): 1153-1165 (2017) - [j4]Dong Song, Ray Luo, Hai-Feng Chen:
The IDP-Specific Force Field ff14IDPSFF Improves the Conformer Sampling of Intrinsically Disordered Proteins. J. Chem. Inf. Model. 57(5): 1166-1178 (2017) - 2016
- [j3]Jingxu Yang, Hao Liu, Xiaorui Liu, Chengbo Gu, Ray Luo, Hai-Feng Chen:
Synergistic Allosteric Mechanism of Fructose-1, 6-bisphosphate and Serine for Pyruvate Kinase M2 via Dynamics Fluctuation Network Analysis. J. Chem. Inf. Model. 56(6): 1184-1192 (2016) - 2015
- [j2]Wei Ye, Dingjue Ji, Wei Wang, Ray Luo, Hai-Feng Chen:
Test and Evaluation of ff99IDPs Force Field for Intrinsically Disordered Proteins. J. Chem. Inf. Model. 55(5): 1021-1029 (2015)
2000 – 2009
- 2009
- [j1]Hai-Feng Chen:
Aggregation mechanism investigation of the GIFQINS cross-beta amyloid fibril. Comput. Biol. Chem. 33(1): 41-45 (2009)
Coauthor Index
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