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ORCIDFrederic B. Bastian
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2020 – today
- 2023
[c3]Tarcisio Mendes de Farias, Tatsuya Kushida, Ana Claudia Sima, Christophe Dessimoz, Hirokazu Chiba, Frédéric B. Bastian, Hiroshi Masuya:
Data in use for Alzheimer disease study: combining gene expression, orthology, bioresource and disease datasets. SWAT4HCLS 2023: 177-178- [i3]Tarcisio Mendes de Farias, Julien Wollbrett, Marc Robinson-Rechavi, Frederic B. Bastian:
Boosting interoperability: towards an increasingly reusable bioinformatics knowledge base. CoRR abs/2303.12329 (2023) - 2021
- [j8]Frederic B. Bastian
, Julien Roux, Anne Niknejad, Aurélie Comte, Sara S. Fonseca Costa, Tarcisio Mendes de Farias, Sébastien Moretti, Gilles Parmentier, Valentine Rech de Laval, Marta Rosikiewicz, Julien Wollbrett, Amina Echchiki, Angélique Escoriza, Walid H. Gharib, Mar Gonzales-Porta, Yohan Jarosz, Balazs Laurenczy, Philippe Moret, Emilie Person, Patrick Roelli, Komal Sanjeev, Mathieu Seppey, Marc Robinson-Rechavi:
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. Nucleic Acids Res. 49(Database-Issue): D831-D847 (2021) - [i2]Sihem Amer-Yahia, Georgia Koutrika, Frederic B. Bastian, Theofilos Belmpas, Martin Braschler, Ursin Brunner, Diego Calvanese, Maximilian Fabricius, Orest Gkini, Catherine Kosten, Davide Lanti, Antonis Litke, Hendrik Lücke-Tieke, Francesco Alessandro Massucci, Tarcisio Mendes de Farias, Alessandro Mosca, Francesco Multari, Nikolaos Papadakis, Dimitris Papadopoulos, Yogendra Patil, Aurélien Personnaz, Guillem Rull, Ana Claudia Sima, Ellery Smith, Dimitrios Skoutas, Srividya Subramanian, Guohui Xiao, Kurt Stockinger:
INODE: Building an End-to-End Data Exploration System in Practice [Extended Vision]. CoRR abs/2104.04194 (2021)
2010 – 2019
- 2019
- [c2]Amanda Bell, Raja Mazumder, Daniel J. Crichton, Vijay K. Shanker, Frédéric B. Bastian, Hayley Dingerdissen, Samir Gupta, Evan Holmes, Robel Y. Kahsay, Heather L. Kincaid, A. S. M. Ashique Mahmood, Marc Robinson-Rechavi, Stephanie S. Singleton:
OncoMX: an Integrated Cancer Mutation and Expression Knowledgebase for Biomarker Evaluation and Discovery. AMIA 2019 - 2016
- [i1]Andrea Komljenovic, Julien Roux, Marc Robinson-Rechavi, Frederic B. Bastian:
BgeeDB, an R package for retrieval of curated expression datasets and for gene list expression localization enrichment tests. F1000Research 5: 2748 (2016) - 2015
- [j7]Frederic B. Bastian, Marcus C. Chibucos, Pascale Gaudet, Michelle G. Giglio, Gemma L. Holliday, Hong Huang, Suzanna E. Lewis, Anne Niknejad, Sandra E. Orchard, Sylvain Poux, Nives Skunca, Marc Robinson-Rechavi:
The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations. Database J. Biol. Databases Curation 2015 (2015) - 2014
- [j6]Melissa A. Haendel, James P. Balhoff, Frederic B. Bastian, David C. Blackburn, Judith A. Blake, Yvonne M. Bradford, Aurélie Comte, Wasila M. Dahdul, Thomas Dececchi, Robert E. Druzinsky, Terry F. Hayamizu, Nizar Ibrahim, Suzanna E. Lewis, Paula M. Mabee, Anne Niknejad, Marc Robinson-Rechavi, Paul C. Sereno, Christopher J. Mungall:
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon. J. Biomed. Semant. 5: 21 (2014) - [j5]Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic B. Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frédérique Lisacek, Olivier Michielin, Patricia M. Palagi, Jacques Rougemont, Torsten Schwede, Christian von Mering, Erik van Nimwegen, Daniel Walther, Ioannis Xenarios, Mihaela Zavolan, Evgeny M. Zdobnov, Vincent Zoete, Ron D. Appel:
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. Nucleic Acids Res. 42(Webserver-Issue): 436-441 (2014) - 2013
- [j4]Marta Rosikiewicz, Aurélie Comte, Anne Niknejad, Marc Robinson-Rechavi, Frederic B. Bastian:
Uncovering hidden duplicated content in public transcriptomics data. Database J. Biol. Databases Curation 2013 (2013) - 2012
- [j3]Pascale Gaudet, Cecilia N. Arighi, Frederic B. Bastian, Alex Bateman, Judith A. Blake, J. Michael Cherry, Peter D'Eustachio, Robert D. Finn, Michelle G. Giglio, Lynette Hirschman, Renate Kania, William Klimke, Maria Jesus Martin, Ilene Karsch-Mizrachi, Monica C. Munoz-Torres, Darren A. Natale, Claire O'Donovan, B. F. Francis Ouellette, Kim D. Pruitt, Marc Robinson-Rechavi, Susanna-Assunta Sansone, Paul N. Schofield, Granger G. Sutton, Kimberly Van Auken, Sona Vasudevan, Cathy H. Wu, Jasmine Young, Raja Mazumder:
Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference. Database J. Biol. Databases Curation 2012 (2012) - [j2]Anne Niknejad, Aurélie Comte, Gilles Parmentier, Julien Roux, Frederic B. Bastian, Marc Robinson-Rechavi:
vHOG, a multispecies vertebrate ontology of homologous organs groups. Bioinform. 28(7): 1017-1020 (2012) - 2010
- [j1]Gilles Parmentier, Frederic B. Bastian, Marc Robinson-Rechavi:
Homolonto: generating homology relationships by pairwise alignment of ontologies and application to vertebrate anatomy. Bioinform. 26(14): 1766-1771 (2010)
2000 – 2009
- 2008
- [c1]Frederic B. Bastian, Gilles Parmentier, Julien Roux, Sébastien Moretti, Vincent Laudet, Marc Robinson-Rechavi:
Bgee: Integrating and Comparing Heterogeneous Transcriptome Data Among Species. DILS 2008: 124-131
Coauthor Index
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