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ORCIDTapio Salakoski
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- affiliation: University of Turku, Finland
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2020 – today
- 2023
[p4]Lauri Malmi, Arto Hellas, Petri Ihantola, Ville Isomöttönen, Ilkka Jormanainen, Terhi Kilamo, Antti Knutas, Ari Korhonen
, Mikko-Jussi Laakso, Sonsoles López-Pernas, Timo Poranen, Tapio Salakoski, Jarkko Suhonen:
Computing Education Research in Finland. Past, Present and Future of Computing Education Research 2023: 335-372- 2022
- [j55]Kai Hakala, Suwisa Kaewphan, Jari Björne, Farrokh Mehryary, Hans Moen, Martti Tolvanen, Tapio Salakoski, Filip Ginter:
Neural Network and Random Forest Models in Protein Function Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 19(3): 1772-1781 (2022) - [c108]Hans Moen, Henry Suhonen, Sanna Salanterä, Tapio Salakoski, Laura-Maria Peltonen:
Clustering Nursing Sentences - Comparing Three Sentence Embedding Methods. MIE 2022: 854-858 - 2021
- [j54]Jenna Kanerva, Filip Ginter, Tapio Salakoski:
Universal Lemmatizer: A sequence-to-sequence model for lemmatizing Universal Dependencies treebanks. Nat. Lang. Eng. 27(5): 545-574 (2021) - [c107]Akseli Reunamo, Laura-Maria Peltonen, Reetta Mustonen, Minttu Saari, Tapio Salakoski, Sanna Salanterä, Hans Moen:
Text Classification Model Explainability for Keyword Extraction - Towards Keyword-Based Summarization of Nursing Care Episodes. MedInfo 2021: 632-636 - [c106]Ashok Kumar Veerasamy, Mikko-Jussi Laakso, Daryl J. D'Souza, Tapio Salakoski:
Predictive Models as Early Warning Systems: A Bayesian Classification Model to Identify At-Risk Students of Programming. SAI (2) 2021: 174-195 - 2020
- [j53]Hans Moen, Kai Hakala, Laura-Maria Peltonen, Hanna-Maria Matinolli, Henry Suhonen, Kirsi Terho, Riitta Danielsson-Ojala, Maija Valta, Filip Ginter, Tapio Salakoski, Sanna Salanterä:
Assisting nurses in care documentation: from automated sentence classification to coherent document structures with subject headings. J. Biomed. Semant. 11(1): 10 (2020) - [j52]Einari Kurvinen, Erkki Kaila, Mikko-Jussi Laakso, Tapio Salakoski:
Long Term Effects on Technology Enhanced Learning: The Use of Weekly Digital Lessons in Mathematics. Informatics Educ. 19(1): 51-75 (2020) - [j51]Hans Moen, Kai Hakala, Laura-Maria Peltonen, Henry Suhonen, Filip Ginter, Tapio Salakoski, Sanna Salanterä:
Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods. J. Am. Medical Informatics Assoc. 27(1): 81-88 (2020) - [c105]Farrokh Mehryary, Hans Moen, Tapio Salakoski, Filip Ginter:
Entity-Pair Embeddings for Improving Relation Extraction in the Biomedical Domain. ESANN 2020: 613-618 - [c104]Samuli Laato, Henna Vilppu, Juho Heimonen, Antti Hakkala, Jari Björne, Ali Farooq, Tapio Salakoski, Antti Airola:
Propagating AI Knowledge Across University Disciplines- The Design of A Multidisciplinary AI Study Module. FIE 2020: 1-9 - [c103]Ashok Kumar Veerasamy, Daryl J. D'Souza, Mikko-Ville Apiola, Mikko-Jussi Laakso, Tapio Salakoski:
Using early assessment performance as early warning signs to identify at-risk students in programming courses. FIE 2020: 1-9
2010 – 2019
- 2019
- [c102]Hans Moen, Laura-Maria Peltonen, Henry Suhonen, Mikko Koivumäki, Tapio Salakoski, Sanna Salanterä:
Unsupervised Phrase-Level Query Rewriting for Assisting Search in Clinical Free Text. MedInfo 2019: 1550-1551 - [c101]Hans Moen, Laura-Maria Peltonen, Henry Suhonen, Hanna-Maria Matinolli, Riitta Mieronkoski, Kirsi Telen, Kirsi Terho, Tapio Salakoski, Sanna Salanterä:
An Unsupervised Query Rewriting Approach Using N-gram Co-occurrence Statistics to Find Similar Phrases in Large Text Corpora. NODALIDA 2019: 131-139 - [c100]Jenna Kanerva, Samuel Rönnqvist, Riina Kekki, Tapio Salakoski, Filip Ginter:
Template-free Data-to-Text Generation of Finnish Sports News. NODALIDA 2019: 242-252 - [i7]Jenna Kanerva, Filip Ginter, Tapio Salakoski:
Universal Lemmatizer: A Sequence to Sequence Model for Lemmatizing Universal Dependencies Treebanks. CoRR abs/1902.00972 (2019) - [i6]Kai Hakala, Aleksi Vesanto, Niko Miekka, Tapio Salakoski, Filip Ginter:
Leveraging Text Repetitions and Denoising Autoencoders in OCR Post-correction. CoRR abs/1906.10907 (2019) - [i5]Jenna Kanerva, Samuel Rönnqvist, Riina Kekki, Tapio Salakoski, Filip Ginter:
Template-free Data-to-Text Generation of Finnish Sports News. CoRR abs/1910.01863 (2019) - [i4]Samuel Rönnqvist, Jenna Kanerva, Tapio Salakoski, Filip Ginter:
Is Multilingual BERT Fluent in Language Generation? CoRR abs/1910.03806 (2019) - [i3]Antti Virtanen, Jenna Kanerva, Rami Ilo, Jouni Luoma, Juhani Luotolahti, Tapio Salakoski, Filip Ginter, Sampo Pyysalo:
Multilingual is not enough: BERT for Finnish. CoRR abs/1912.07076 (2019) - 2018
- [j50]Suwisa Kaewphan, Kai Hakala, Niko Miekka, Tapio Salakoski, Filip Ginter:
Wide-scope biomedical named entity recognition and normalization with CRFs, fuzzy matching and character level modeling. Database J. Biol. Databases Curation 2018: bay096 (2018) - [j49]Farrokh Mehryary, Jari Björne, Tapio Salakoski, Filip Ginter:
Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction. Database J. Biol. Databases Curation 2018: bay120 (2018) - [c99]Hans Moen, Kai Hakala, Laura-Maria Peltonen, Henry Suhonen, Petri Loukasmäki, Tapio Salakoski, Filip Ginter, Sanna Salanterä:
Evaluation of a Prototype System that Automatically Assigns Subject Headings to Nursing Narratives Using Recurrent Neural Network. Louhi@EMNLP 2018: 94-100 - [c98]Jari Björne, Tapio Salakoski:
Biomedical Event Extraction Using Convolutional Neural Networks and Dependency Parsing. BioNLP 2018: 98-108 - [c97]Jenna Kanerva, Filip Ginter, Niko Miekka, Akseli Leino, Tapio Salakoski:
Turku Neural Parser Pipeline: An End-to-End System for the CoNLL 2018 Shared Task. CoNLL Shared Task (2) 2018: 133-142 - [c96]Hans Moen, Laura-Maria Peltonen, Mikko Koivumäki, Henry Suhonen, Tapio Salakoski, Filip Ginter, Sanna Salanterä:
Improving Layman Readability of Clinical Narratives with Unsupervised Synonym Replacement. MIE 2018: 725-729 - 2017
- [c95]Kai Hakala, Farrokh Mehryary, Hans Moen, Suwisa Kaewphan, Tapio Salakoski, Filip Ginter:
Ensemble of Convolutional Neural Networks for Medicine Intake Recognition in Twitter. SMM4H@AMIA 2017: 59-63 - [c94]Farrokh Mehryary, Kai Hakala, Suwisa Kaewphan, Jari Björne, Tapio Salakoski, Filip Ginter:
End-to-End System for Bacteria Habitat Extraction. BioNLP 2017: 80-90 - [c93]Hans Moen, Kai Hakala, Farrokh Mehryary, Laura-Maria Peltonen, Tapio Salakoski, Filip Ginter, Sanna Salanterä:
Detecting mentions of pain and acute confusion in Finnish clinical text. BioNLP 2017: 365-372 - [c92]Aleksi Vesanto, Asko Nivala, Heli Rantala, Tapio Salakoski, Hannu Salmi, Filip Ginter:
Applying BLAST to Text Reuse Detection in Finnish Newspapers and Journals, 1771-1910. ListLang@NoDaLiDa 2017: 54-58 - [c91]Veronika Laippala, Juhani Luotolahti, Aki-Juhani Kyröläinen, Tapio Salakoski, Filip Ginter:
Creating register sub-corpora for the Finnish Internet Parsebank. NODALIDA 2017: 152-161 - [c90]Aleksi Vesanto, Filip Ginter, Hannu Salmi, Asko Nivala, Tapio Salakoski:
A System for Identifying and Exploring Text Repetition in Large Historical Document Corpora. NODALIDA 2017: 330-333 - 2016
- [j48]Hans Moen, Laura-Maria Peltonen, Juho Heimonen, Antti Airola, Tapio Pahikkala, Tapio Salakoski, Sanna Salanterä:
Comparison of automatic summarisation methods for clinical free text notes. Artif. Intell. Medicine 67: 25-37 (2016) - [c89]Teemu Rajala, Erkki Kaila, Rolf Lindén, Einari Kurvinen, Erno Lokkila, Mikko-Jussi Laakso, Tapio Salakoski:
Automatically assessed electronic exams in programming courses. ACSW 2016: 11 - [c88]Farrokh Mehryary, Jari Björne, Sampo Pyysalo, Tapio Salakoski, Filip Ginter:
Deep Learning with Minimal Training Data: TurkuNLP Entry in the BioNLP Shared Task 2016. BioNLP (Shared Task) 2016: 73-81 - [c87]Kai Hakala, Suwisa Kaewphan, Tapio Salakoski, Filip Ginter:
Syntactic analyses and named entity recognition for PubMed and PubMed Central - up-to-the-minute. BioNLP@ACL 2016: 102-107 - [c86]Einari Kurvinen, Niko Hellgren, Erkki Kaila, Mikko-Jussi Laakso, Tapio Salakoski:
Programming Misconceptions in an Introductory Level Programming Course Exam. ITiCSE 2016: 308-313 - [c85]Iman Azimi, Arman Anzanpour, Amir M. Rahmani, Pasi Liljeberg, Tapio Salakoski:
Medical warning system based on Internet of Things using fog computing. IWBIS 2016: 19-24 - [c84]Jari Björne, Tapio Salakoski:
UTU at SemEval-2016 Task 10: Binary Classification for Expression Detection (BCED). SemEval@NAACL-HLT 2016: 925-930 - [c83]Antti Vikström, Sanaz Rahimi Moosavi, Hans Moen, Tapio Salakoski, Sanna Salanterä:
Factors Affecting the Availability of Electronic Patient Records for Secondary Purposes - A Case Study. WIS 2016: 47-56 - 2015
- [j47]Kai Hakala, Sofie Van Landeghem, Tapio Salakoski, Yves Van de Peer, Filip Ginter:
Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis. BMC Bioinform. 16(S16): S3 (2015) - [j46]Jari Björne, Tapio Salakoski:
TEES 2.2: Biomedical Event Extraction for Diverse Corpora. BMC Bioinform. 16(S16): S4 (2015) - [j45]Salla Willman, Rolf Lindén, Erkki Kaila, Teemu Rajala, Mikko-Jussi Laakso, Tapio Salakoski:
On study habits on an introductory course on programming. Comput. Sci. Educ. 25(3): 276-291 (2015) - [j44]Hans Moen, Filip Ginter, Erwin Marsi, Laura-Maria Peltonen, Tapio Salakoski, Sanna Salanterä:
Care episode retrieval: distributional semantic models for information retrieval in the clinical domain. BMC Medical Informatics Decis. Mak. 15-S(S-2): S2 (2015) - [c82]Erkki Kaila, Teemu Rajala, Mikko-Jussi Laakso, Rolf Lindén, Einari Kurvinen, Ville Karavirta, Tapio Salakoski:
Comparing student performance between traditional and technologically enhanced programming course. ACE 2015: 147-154 - [c81]Pekka Naula, Antti Airola, Tapio Salakoski, Tapio Pahikkala:
Learning Low Cost Multi-target Models by Enforcing Sparsity. IEA/AIE 2015: 252-261 - [c80]Ville Karavirta, Riku Haavisto, Erkki Kaila, Mikko-Jussi Laakso, Teemu Rajala, Tapio Salakoski:
Interactive Learning Content for Introductory Computer Science Course Using the ViLLE Exercise Framework. LaTiCE 2015: 9-16 - [c79]Veronika Laippala, Jenna Kanerva, Anna Missilä, Sampo Pyysalo, Tapio Salakoski, Filip Ginter:
Towards the Classification of the Finnish Internet Parsebank: Detecting Translations and Informality. NODALIDA 2015: 107-116 - [p3]N. A. Khan, Natalia Díaz Rodríguez, Riitta Danielsson-Ojala, Hanna Pirinen, Lotta Kauhanen, Sanna Salanterä, Joachim Majors, Sebu Björklund, Kimmo Rautanen, Tapio Salakoski, Ilona Tuominen, Ivan Porres, Johan Lilius:
Smart Dosing: A mobile application for tracking the medication tray-filling and dispensation processes in hospital wards. Recent Advances in Ambient Assisted Living 2015: 134-144 - 2014
- [j43]Veronika Laippala, Timo Viljanen, Antti Airola, Jenna Kanerva, Sanna Salanterä, Tapio Salakoski, Filip Ginter:
Statistical parsing of varieties of clinical Finnish. Artif. Intell. Medicine 61(3): 131-136 (2014) - [j42]Elina Kontio, Antti Airola, Tapio Pahikkala, Heljä Lundgrén-Laine, Kristiina Junttila, Heikki Korvenranta, Tapio Salakoski, Sanna Salanterä:
Predicting patient acuity from electronic patient records. J. Biomed. Informatics 51: 35-40 (2014) - [j41]Katri Haverinen, Jenna Nyblom, Timo Viljanen, Veronika Laippala, Samuel Kohonen, Anna Missilä, Stina Ojala, Tapio Salakoski, Filip Ginter:
Building the essential resources for Finnish: the Turku Dependency Treebank. Lang. Resour. Evaluation 48(3): 493-531 (2014) - [j40]Pekka Naula, Antti Airola, Tapio Salakoski, Tapio Pahikkala:
Multi-label learning under feature extraction budgets. Pattern Recognit. Lett. 40: 56-65 (2014) - [c78]Hans Moen, Erwin Marsi, Filip Ginter, Laura-Maria Murtola, Tapio Salakoski, Sanna Salanterä:
Care Episode Retrieval. Louhi@EACL 2014: 116-124 - [c77]Natalia Díaz Rodríguez, Johan Lilius, Sebu Björklund, Joachim Majors, Kimmo Rautanen, Riitta Danielsson-Ojala, Hanna Pirinen, Lotta Kauhanen, Sanna Salanterä, Tapio Salakoski, Ilona Tuominen:
Can IT health-care applications improve the medication tray-filling process at hospital wards? An exploratory study using eye-tracking and stress response. Healthcom 2014: 423-428 - [c76]Einari Kurvinen, Rolf Lindén, Teemu Rajala, Erkki Kaila, Mikko-Jussi Laakso, Tapio Salakoski:
Automatic assessment and immediate feedback in first grade mathematics. Koli Calling 2014: 15-23 - [c75]Hans Moen, Juho Heimonen, Laura-Maria Murtola, Antti Airola, Tapio Pahikkala, Virpi Terävä, Riitta Danielsson-Ojala, Tapio Salakoski, Sanna Salanterä:
On Evaluation of Automatically Generated Clinical Discharge Summaries. PAHI 2014: 101-114 - [c74]Juho Heimonen, Tapio Salakoski, Tapio Pahikkala:
Properties of Object-Level Cross-Validation Schemes for Symmetric Pair-Input Data. S+SSPR 2014: 384-393 - [c73]Lotta Kauhanen, Laura-Maria Murtola, Juho Heimonen, Tuija Leskinen, Kari Kalliokoski, Elina Raivo, Tapio Salakoski, Sanna Salanterä:
Documentation of the Clinical Phase of the Cardiac Rehabilitation Process in a Finnish University Hospital District. WIS 2014: 57-67 - 2013
- [j39]Olli Sjöblom, Laura-Maria Murtola, Juho Heimonen, Lotta Kauhanen, Veronika Laippala, Heljä Lundgrén-Laine, Tapio Salakoski, Sanna Salanterä:
Using cluster analysis to identify weak signals of lethal trends in aviation and healthcare documentation. Int. J. Netw. Virtual Organisations 13(1): 66-80 (2013) - [c72]Jari Björne, Tapio Salakoski:
TEES 2.1: Automated Annotation Scheme Learning in the BioNLP 2013 Shared Task. BioNLP@ACL (Shared Task) 2013: 16-25 - [c71]Kai Hakala, Sofie Van Landeghem, Tapio Salakoski, Yves Van de Peer, Filip Ginter:
EVEX in ST'13: Application of a large-scale text mining resource to event extraction and network construction. BioNLP@ACL (Shared Task) 2013: 26-34 - [c70]Laura-Maria Murtola, Lotta Kauhanen, Hans Moen, Heljä Lundgrén-Laine, Tapio Salakoski, Sanna Salanterä:
Using Text Mining to Explore Factors Associated with Acute Confusion in Cardiac Patients Documentation. CLEF (Working Notes) 2013 - [c69]Jenna Nyblom, Samuel Kohonen, Katri Haverinen, Tapio Salakoski, Filip Ginter:
Predicting Conjunct Propagation and Other Extended Stanford Dependencies. DepLing 2013: 252-261 - [c68]Katri Haverinen, Veronika Laippala, Samuel Kohonen, Anna Missilä, Jenna Nyblom, Stina Ojala, Timo Viljanen, Tapio Salakoski, Filip Ginter:
Towards a Dependency-based PropBank of General Finnish. NODALIDA 2013: 41-57 - [c67]Filip Ginter, Jenna Nyblom, Veronika Laippala, Samuel Kohonen, Katri Haverinen, Simo Vihjanen, Tapio Salakoski:
Building a Large Automatically Parsed Corpus of Finnish. NODALIDA 2013: 291-300 - [c66]Jari Björne, Suwisa Kaewphan, Tapio Salakoski:
UTurku: Drug Named Entity Recognition and Drug-Drug Interaction Extraction Using SVM Classification and Domain Knowledge. SemEval@NAACL-HLT 2013: 651-659 - 2012
- [j38]Sofie Van Landeghem, Kai Hakala, Samuel Rönnqvist, Tapio Salakoski, Yves Van de Peer, Filip Ginter:
Exploring Biomolecular Literature with EVEX: Connecting Genes through Events, Homology, and Indirect Associations. Adv. Bioinformatics 2012: 582765:1-582765:12 (2012) - [j37]Tapio Pahikkala, Sebastian Okser, Antti Airola, Tapio Salakoski, Tero Aittokallio:
Wrapper-based selection of genetic features in genome-wide association studies through fast matrix operations. Algorithms Mol. Biol. 7: 11 (2012) - [j36]Jari Björne, Filip Ginter, Tapio Salakoski:
University of Turku in the BioNLP'11 Shared Task. BMC Bioinform. 13(S-11): S4 (2012) - [j35]Sofie Van Landeghem, Jari Björne, Thomas Abeel, Bernard De Baets, Tapio Salakoski, Yves Van de Peer:
Semantically linking molecular entities in literature through entity relationships. BMC Bioinform. 13(S-11): S6 (2012) - [j34]Tapio Pahikkala, Antti Airola, Thomas Canhao Xu, Pasi Liljeberg, Hannu Tenhunen, Tapio Salakoski:
Parallelized Online Regularized Least-Squares for Adaptive Embedded Systems. Int. J. Embed. Real Time Commun. Syst. 3(2): 73-91 (2012) - [j33]Willem Waegeman, Tapio Pahikkala, Antti Airola, Tapio Salakoski, Michiel Stock, Bernard De Baets:
A Kernel-Based Framework for Learning Graded Relations From Data. IEEE Trans. Fuzzy Syst. 20(6): 1090-1101 (2012) - [c65]Jari Björne, Sofie Van Landeghem, Sampo Pyysalo, Tomoko Ohta, Filip Ginter, Yves Van de Peer, Sophia Ananiadou, Tapio Salakoski:
PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations. BioNLP@HLT-NAACL 2012: 82-90 - [c64]Juho Heimonen, Tapio Salakoski, Sanna Salanterä:
An Ontology to Improve Accessibility and Quality of Patient Instructions. CLEF (Online Working Notes/Labs/Workshop) 2012 - [c63]Veronika Laippala, Riitta Danielsson-Ojala, Heljä Lundgrén-Laine, Sanna Salanterä, Tapio Salakoski:
Vocabulary In Discharge Documents The Patient's Perspective. CLEF (Online Working Notes/Labs/Workshop) 2012 - [c62]Thomas Canhao Xu, Tapio Pahikkala, Antti Airola, Pasi Liljeberg, Juha Plosila, Tapio Salakoski, Hannu Tenhunen:
Implementation and Analysis of Block Dense Matrix Decomposition on Network-on-Chips. HPCC-ICESS 2012: 516-523 - [c61]Johannes Holvitie, Teemu Rajala, Riku Haavisto, Erkki Kaila, Mikko-Jussi Laakso, Tapio Salakoski:
Breaking the Programming Language Barrier: Using Program Visualizations to Transfer Programming Knowledge in One Programming Language to Another. ICALT 2012: 116-120 - [c60]Einari Kurvinen, Rolf Lindén, Teemu Rajala, Erkki Kaila, Mikko-Jussi Laakso, Tapio Salakoski:
Computer-assisted learning in primary school mathematics using ViLLE education tool. Koli Calling 2012: 39-46 - [c59]Teemu Mäntyharju, Tapio Salakoski, Matti Koivula, Mikko-Jussi Laakso:
VirTu: virtual tutoring environment. Koli Calling 2012: 147-148 - [c58]Sebastian Okser, Antti Airola, Tero Aittokallio, Tapio Salakoski, Tapio Pahikkala:
Parallel Feature Selection for Regularized Least-Squares. PARA 2012: 280-294 - [c57]Olli Sjöblom, Juho Heimonen, Lotta Kauhanen, Veronika Laippala, Heljä Lundgrén-Laine, Laura-Maria Murtola, Tapio Salakoski, Sanna Salanterä:
Avoiding Hazards - What Can Health Care Learn from Aviation? WIS 2012: 119-127 - 2011
- [j32]Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii:
U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinform. 12: 481 (2011) - [j31]Jari Björne, Juho Heimonen, Filip Ginter, Antti Airola, Tapio Pahikkala, Tapio Salakoski:
Extracting Contextualized Complex Biological Events with Rich Graph-Based Feature Sets. Comput. Intell. 27(4): 541-557 (2011) - [j30]Antti Airola, Tapio Pahikkala, Willem Waegeman, Bernard De Baets, Tapio Salakoski:
An experimental comparison of cross-validation techniques for estimating the area under the ROC curve. Comput. Stat. Data Anal. 55(4): 1828-1844 (2011) - [j29]Antti Airola, Tapio Pahikkala, Tapio Salakoski:
On Learning and Cross-Validation with Decomposed Nyström Approximation of Kernel Matrix. Neural Process. Lett. 33(1): 17-30 (2011) - [j28]Antti Airola, Tapio Pahikkala, Tapio Salakoski:
Training linear ranking SVMs in linearithmic time using red-black trees. Pattern Recognit. Lett. 32(9): 1328-1336 (2011) - [c56]Sofie Van Landeghem, Filip Ginter, Yves Van de Peer, Tapio Salakoski:
EVEX: A PubMed-Scale Resource for Homology-Based Generalization of Text Mining Predictions. BioNLP@ACL 2011: 28-37 - [c55]Jari Björne, Tapio Salakoski:
Generalizing Biomedical Event Extraction. BioNLP@ACL (Shared Task) 2011: 183-191 - [c54]Katri Haverinen, Filip Ginter, Veronika Laippala, Samuel Kohonen, Timo Viljanen, Jenna Nyblom, Tapio Salakoski:
A Dependency-based Analysis of Treebank Annotation Errors. DepLing 2011: 47-61 - [c53]Willem Waegeman, Tapio Pahikkala, Antti Airola, Tapio Salakoski, Bernard De Baets:
Learning Valued Relations from Data. Eurofuse 2011: 257-268 - [c52]Teemu Rajala, Erkki Kaila, Johannes Holvitie, Riku Haavisto, Mikko-Jussi Laakso, Tapio Salakoski:
Comparing the collaborative and independent viewing of program visualizations. FIE 2011: 3 - [c51]Sebastian Okser, Tapio Pahikkala, Antti Airola, Tero Aittokallio, Tapio Salakoski:
Fast and parallelized greedy forward selection of genetic variants in Genome-wide association studies. GENSiPS 2011: 214-217 - [c50]Antti Airola, Tapio Pahikkala, Tapio Salakoski:
An Improved Training Algorithm for the Linear Ranking Support Vector Machine. ICANN (1) 2011: 134-141 - [c49]Pekka Naula, Tapio Pahikkala, Antti Airola, Tapio Salakoski:
Greedy Regularized Least-Squares for Multi-task Learning. ICDM Workshops 2011: 527-533 - [c48]Tapio Pahikkala, Antti Airola, Thomas Canhao Xu, Pasi Liljeberg, Hannu Tenhunen, Tapio Salakoski:
A Parallel Online Regularized Least-squares Machine Learning Algorithm for Future Multi-core Processors. PECCS 2011: 590-599 - [c47]Pekka Naula, Tapio Pahikkala, Antti Airola, Tapio Salakoski:
Learning Multi-Label Predictors under Sparsity Budget. SCAI 2011: 30-39 - [i2]Willem Waegeman, Tapio Pahikkala, Antti Airola, Tapio Salakoski, Michiel Stock, Bernard De Baets:
A kernel-based framework for learning graded relations from data. CoRR abs/1111.6473 (2011) - 2010
- [j27]Jari Björne, Filip Ginter, Sampo Pyysalo, Jun'ichi Tsujii, Tapio Salakoski:
Complex event extraction at PubMed scale. Bioinform. 26(12): 382-390 (2010) - [j26]Tapio Pahikkala, Willem Waegeman, Evgeni Tsivtsivadze, Tapio Salakoski, Bernard De Baets:
Learning intransitive reciprocal relations with kernel methods. Eur. J. Oper. Res. 206(3): 676-685 (2010) - [j25]Satu Jääskeläinen, Pentti Riikonen, Tapio Salakoski, Mauno Vihinen:
Accuracy of protein hydropathy predictions. Int. J. Data Min. Bioinform. 4(6): 735-754 (2010) - [c46]Katri Haverinen, Filip Ginter, Timo Viljanen, Veronika Laippala, Tapio Salakoski:
Dependency-Based PropBanking of Clinical Finnish. Linguistic Annotation Workshop 2010: 137-141 - [c45]Denis Shestakov, Tapio Salakoski:
Host-IP Clustering Technique for Deep Web Characterization. APWeb 2010: 378-380 - [c44]Jari Björne, Filip Ginter, Sampo Pyysalo, Jun'ichi Tsujii, Tapio Salakoski:
Scaling up Biomedical Event Extraction to the Entire PubMed. BioNLP@ACL 2010: 28-36 - [c43]Juho Heimonen, Jari Björne, Tapio Salakoski:
Reconstruction of Semantic Relationships from Their Projections in Biomolecular Domain. BioNLP@ACL 2010: 108-116 - [c42]Tapio Pahikkala, Antti Airola, Tapio Salakoski:
Speeding Up Greedy Forward Selection for Regularized Least-Squares. ICMLA 2010: 325-330 - [c41]Antti Airola, Tapio Pahikkala, Jorma Boberg, Tapio Salakoski:
Applying Permutation Tests for Assessing the Statistical Significance of Wrapper Based Feature Selection. ICMLA 2010: 989-994 - [c40]Lauri Malmi, Tapio Salakoski:
Reflections on Koli Calling Conference: emergence of the Koli spirit. Koli Calling 2010: 128 - [c39]Tapio Pahikkala, Willem Waegeman, Antti Airola, Tapio Salakoski, Bernard De Baets:
Conditional Ranking on Relational Data. ECML/PKDD (2) 2010: 499-514 - [c38]Denis Shestakov, Tapio Salakoski:
Host-IP clustering technique for deep web characterization. SAC 2010: 874-875 - [c37]Antti Airola, Tapio Pahikkala, Willem Waegeman, Bernard De Baets, Tapio Salakoski:
A comparison of AUC estimators in small-sample studies. MLSB 2010: 3-13 - [p2]Evgeni Tsivtsivadze, Tapio Pahikkala, Jorma Boberg, Tapio Salakoski, Tom Heskes:
Co-Regularized Least-Squares for Label Ranking. Preference Learning 2010: 107-123
2000 – 2009
- 2009
- [j24]Evgeni Tsivtsivadze, Tapio Pahikkala, Jorma Boberg, Tapio Salakoski:
Locality kernels for sequential data and their applications to parse ranking. Appl. Intell. 31(1): 81-88 (2009) - [j23]Erkki Kaila, Teemu Rajala, Mikko-Jussi Laakso, Tapio Salakoski:
Effects, Experiences and Feedback from Studies of a Program Visualization Tool. Informatics Educ. 8(1): 17-34 (2009) - [j22]Filip Ginter, Hanna Suominen, Sampo Pyysalo, Tapio Salakoski:
Combining hidden Markov models and latent semantic analysis for topic segmentation and labeling: Method and clinical application. Int. J. Medical Informatics 78(12): 1-6 (2009) - [j21]Veronika Laippala, Filip Ginter, Sampo Pyysalo, Tapio Salakoski:
Towards automated processing of clinical Finnish: Sublanguage analysis and a rule-based parser. Int. J. Medical Informatics 78(12): 7-12 (2009) - [j20]Tapio Pahikkala, Sampo Pyysalo, Jorma Boberg, Jouni Järvinen, Tapio Salakoski:
Matrix representations, linear transformations, and kernels for disambiguation in natural language. Mach. Learn. 74(2): 133-158 (2009) - [c36]Jari Björne, Juho Heimonen, Filip Ginter, Antti Airola, Tapio Pahikkala, Tapio Salakoski:
Extracting Complex Biological Events with Rich Graph-Based Feature Sets. BioNLP@HLT-NAACL (Shared Task) 2009: 10-18 - [c35]Mika Laaksonen, Barbara Simell, Tapio Salakoski, Olli Simell:
Integrated Data Management and Analysis Environment for Medical Longitudinal Research with Machine Learning Based Prediction Models. CSIE (1) 2009: 552-556 - [c34]Tapio Pahikkala, Hanna Suominen, Jorma Boberg, Tapio Salakoski:
Efficient Hold-Out for Subset of Regressors. ICANNGA 2009: 350-359 - [c33]Hanna Suominen, Heljä Lundgrén-Laine, Sanna Salanterä, Tapio Salakoski:
Evaluating Pain in Intensive Care. Nursing Informatics 2009: 192-196 - [c32]Jari Björne, Filip Ginter, Juho Heimonen, Sampo Pyysalo, Tapio Salakoski:
Learning to Extract Biological Event and Relation Graphs. NODALIDA 2009: 18-25 - [c31]Katri Haverinen, Filip Ginter, Veronika Laippala, Tapio Salakoski:
Parsing Clinical Finnish: Experiments with Rule-Based and Statistical Dependency Parsers. NODALIDA 2009: 65-72 - 2008
- [j19]Chang Sik Kim, Pentti Riikonen, Tapio Salakoski:
Detecting biological associations between genes based on the theory of phase synchronization. Biosyst. 92(2): 99-113 (2008) - [j18]Antti Airola, Sampo Pyysalo, Jari Björne, Tapio Pahikkala, Filip Ginter, Tapio Salakoski:
All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning. BMC Bioinform. 9(S-11) (2008) - [j17]Sampo Pyysalo, Antti Airola, Juho Heimonen, Jari Björne, Filip Ginter, Tapio Salakoski:
Comparative analysis of five protein-protein interaction corpora. BMC Bioinform. 9(S-3) (2008) - [j16]Teemu Rajala, Mikko-Jussi Laakso, Erkki Kaila, Tapio Salakoski:
Effectiveness of Program Visualization: A Case Study with the ViLLE Tool. J. Inf. Technol. Educ. Innov. Pract. 7: 15-32 (2008) - [c30]Antti Airola, Sampo Pyysalo, Jari Björne, Tapio Pahikkala, Filip Ginter, Tapio Salakoski:
A Graph Kernel for Protein-Protein Interaction Extraction. BioNLP 2008: 1-9 - [c29]Mikko-Jussi Laakso, Erkki Kaila, Teemu Rajala, Tapio Salakoski:
Define and Visualize Your First Programming Language. ICALT 2008: 324-326 - [c28]Tuomo Saarni, Jussi Hakokari, Jouni Isoaho, Tapio Salakoski:
Utterance-level normalization for relative articulation rate analysis. INTERSPEECH 2008: 538-541 - [c27]Jussi Hakokari, Tuomo Saarni, Jouni Isoaho, Tapio Salakoski:
Correlation of utterance length and segmental duration in Finnish is questionable. INTERSPEECH 2008: 881-884 - [c26]Stina Ojala, Olli Aaltonen, Tapio Salakoski:
Investigating perception of places of articulation in sign and speech. INTERSPEECH 2008: 1969 - [c25]Erkki Kaila, Teemu Rajala, Mikko-Jussi Laakso, Tapio Salakoski:
Automatic assessment of program visualization exercises. Koli Calling 2008: 101-104 - [c24]Tapio Pahikkala, Antti Airola, Hanna Suominen, Jorma Boberg, Tapio Salakoski:
Efficient AUC Maximization with Regularized Least-Squares. SCAI 2008: 12-19 - [c23]Evgeni Tsivtsivadze, Tapio Pahikkala, Antti Airola, Jorma Boberg, Tapio Salakoski:
A Sparse Regularized Least-Squares Preference Learning Algorithm. SCAI 2008: 76-83 - [p1]Evgeni Tsivtsivadze, Tapio Pahikkala, Jorma Boberg, Tapio Salakoski:
Kernels for Text Analysis. Advances of Computational Intelligence in Industrial Systems 2008: 81-97 - 2007
- [j15]Sampo Pyysalo, Filip Ginter, Juho Heimonen, Jari Björne, Jorma Boberg, Jouni Järvinen, Tapio Salakoski:
BioInfer: a corpus for information extraction in the biomedical domain. BMC Bioinform. 8 (2007) - [j14]Hanna Suominen, Tuija Lehtikunnas, Barbro Back, Helena Karsten, Tapio Salakoski, Sanna Salanterä:
Applying language technology to nursing documents: Pros and cons with a focus on ethics. Int. J. Medical Informatics 76(S2): S293-S301 (2007) - [j13]Marketta Hiissa, Tapio Pahikkala, Hanna Suominen, Tuija Lehtikunnas, Barbro Back, Helena Karsten, Sanna Salanterä, Tapio Salakoski:
Towards automated classification of intensive care nursing narratives. Int. J. Medical Informatics 76(S3): S362-S368 (2007) - [c22]Satu Jääskeläinen, Pentti Riikonen, Tapio Salakoski, Mauno Vihinen:
Evaluation of Protein Hydropathy Scales. BIBM 2007: 245-251 - [c21]Sampo Pyysalo, Filip Ginter, Veronika Laippala, Katri Haverinen, Juho Heimonen, Tapio Salakoski:
On the unification of syntactic annotations under the Stanford dependency scheme: A case study on BioInfer and GENIA. BioNLP@ACL 2007: 25-32 - [c20]Denis Shestakov, Tapio Salakoski:
On Estimating the Scale of National Deep Web. DEXA 2007: 780-789 - [c19]Tuomo Saarni, Jussi Hakokari, Olli Aaltonen, Jouni Isoaho, Tapio Salakoski:
Utterance-Initial Duration of Finnish Non-Plosive Consonants. NODALIDA 2007: 160-166 - [c18]Janne Savela, Stina Ojala, Olli Aaltonen, Tapio Salakoski:
Role of Different Spectral Attributes in Vowel Categorization: the Case of Udmurt. NODALIDA 2007: 384-388 - [c17]Evgeni Tsivtsivadze, Jorma Boberg, Tapio Salakoski:
Locality Kernels for Protein Classification. WABI 2007: 2-11 - 2006
- [j12]Sampo Pyysalo, Tapio Salakoski, Sophie Aubin, Adeline Nazarenko:
Lexical adaptation of link grammar to the biomedical sublanguage: a comparative evaluation of three approaches. BMC Bioinform. 7(S-3) (2006) - [j11]Tapio Salakoski:
Editorial comments. Comput. Sci. Educ. 16(3): 173 (2006) - [j10]Linda Mannila, Mia Peltomäki, Tapio Salakoski:
What about a simple language? Analyzing the difficulties in learning to program. Comput. Sci. Educ. 16(3): 211-227 (2006) - [j9]Sampo Pyysalo, Filip Ginter, Tapio Pahikkala, Jorma Boberg, Jouni Järvinen, Tapio Salakoski:
Evaluation of two dependency parsers on biomedical corpus targeted at protein-protein interactions. Int. J. Medical Informatics 75(6): 430-442 (2006) - [c16]Tuomo Saarni, Jyri Paakkulainen, Tuomas Mäkilä, Jussi Hakokari, Olli Aaltonen, Jouni Isoaho, Tapio Salakoski:
Implementing a Rule-Based Speech Synthesizer on a Mobile Platform. FinTAL 2006: 349-355 - [c15]Tapio Pahikkala, Jorma Boberg, Aleksandr Mylläri, Tapio Salakoski:
Incorporating External Information in Bayesian Classifiers Via Linear Feature Transformations. FinTAL 2006: 399-410 - [c14]Filip Ginter, Sampo Pyysalo, Jorma Boberg, Tapio Salakoski:
Regular Approximation of Link Grammar. FinTAL 2006: 564-575 - [c13]Tuomo Saarni, Jussi Hakokari, Jouni Isoaho, Olli Aaltonen, Tapio Salakoski:
Segmental Duration in Utterance-Initial Environment: Evidence from Finnish Speech Corpora. FinTAL 2006: 576-584 - [c12]Annu Paganus, Vesa-Petteri Mikkonen, Tomi Mäntylä, Sami Nuuttila, Jouni Isoaho, Olli Aaltonen, Tapio Salakoski:
The Vowel Game: Continuous Real-Time Visualization for Pronunciation Learning with Vowel Charts. FinTAL 2006: 696-703 - [c11]Evgeni Tsivtsivadze, Tapio Pahikkala, Jorma Boberg, Tapio Salakoski:
Locality-Convolution Kernel and Its Application to Dependency Parse Ranking. IEA/AIE 2006: 610-618 - [c10]Hanna Suominen, Tapio Pahikkala, Marketta Hiissa, Tuija Lehtikunnas, Barbro Back, Helena Karsten, Sanna Salanterä, Tapio Salakoski:
Relevance Ranking of Intensive Care Nursing Narratives. KES (1) 2006: 720-727 - [c9]Marketta Hiissa, Tapio Pahikkala, Hanna Suominen, Tuija Lehtikunnas, Barbro Back, Helena Karsten, Sanna Salanterä, Tapio Salakoski:
Towards Automated Classification of Intensive Care Nursing Narratives. MIE 2006: 789-794 - [c8]Sampo Pyysalo, Tapio Salakoski, Sophie Aubin, Adeline Nazarenko:
Lexical Adaptation of Link Grammar to the Biomedical Sublanguage: a Comparative Evaluation of Three Approaches. SMBM 2006 - [e1]Tapio Salakoski, Filip Ginter, Sampo Pyysalo, Tapio Pahikkala:
Advances in Natural Language Processing, 5th International Conference on NLP, FinTAL 2006, Turku, Finland, August 23-25, 2006, Proceedings. Lecture Notes in Computer Science 4139, Springer 2006, ISBN 3-540-37334-9 [contents] - [i1]Sampo Pyysalo, Tapio Salakoski, Sophie Aubin, Adeline Nazarenko:
Lexical Adaptation of Link Grammar to the Biomedical Sublanguage: a Comparative Evaluation of Three Approaches. CoRR abs/cs/0606119 (2006) - 2005
- [j8]Tapio Pahikkala, Filip Ginter, Jorma Boberg, Jouni Järvinen, Tapio Salakoski:
Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation. BMC Bioinform. 6: 157 (2005) - [j7]Aleksandr Mylläri, Tapio Salakoski, Alexey Pasechnik:
On the visualization of the DNA sequence and its nucleotide content. SIGSAM Bull. 39(4): 131-135 (2005) - [j6]Mikko-Jussi Laakso, Tapio Salakoski, Linda Grandell, Xuemei Qiu, Ari Korhonen, Lauri Malmi:
Multi-Perspective Study of Novice Learners Adopting the Visual Algorithm Simulation Exercise System TRAKLA2. Informatics Educ. 4(1): 49-68 (2005) - [c7]Denis Shestakov, Tapio Salakoski:
Web Services for DNA Sequence Analysis. DEXA Workshops 2005: 600-604 - [c6]Tapio Pahikkala, Sampo Pyysalo, Filip Ginter, Jorma Boberg, Jouni Järvinen, Tapio Salakoski:
Kernels Incorporating Word Positional Information in Natural Language Disambiguation Tasks. FLAIRS 2005: 442-448 - [c5]Mikko-Jussi Laakso, Tapio Salakoski, Ari Korhonen:
The Feasibility of Automatic Assessment and Feedback. CELDA 2005: 113-122 - [c4]Evgeni Tsivtsivadze, Tapio Pahikkala, Sampo Pyysalo, Jorma Boberg, Aleksandr Mylläri, Tapio Salakoski:
Regularized Least-Squares for Parse Ranking. IDA 2005: 464-474 - 2004
- [j5]Filip Ginter, Jorma Boberg, Jouni Järvinen, Tapio Salakoski:
New Techniques for Disambiguation in Natural Language and Their Application to Biological Text. J. Mach. Learn. Res. 5: 605-621 (2004) - [c3]Sampo Pyysalo, Filip Ginter, Tapio Pahikkala, Jorma Boberg, Jouni Järvinen, Tapio Salakoski, Jeppe Koivula:
Analysis of Link Grammar on Biomedical Dependency Corpus Targeted at Protein-Protein Interactions. NLPBA/BioNLP 2004 - [c2]Filip Ginter, Tapio Pahikkala, Sampo Pyysalo, Jorma Boberg, Jouni Järvinen, Tapio Salakoski:
Extracting Protein-Protein Interaction Sentences by Applying Rough Set Data Analysis. Rough Sets and Current Trends in Computing 2004: 780-785 - [c1]Filip Ginter, Sampo Pyysalo, Jorma Boberg, Jouni Järvinen, Tapio Salakoski:
Ontology-Based Feature Transformations: A Data-Driven Approach. EsTAL 2004: 280-291 - 2002
- [j4]Pentti Riikonen, Jorma Boberg, Tapio Salakoski, Mauno Vihinen:
Mobile access to biological databases on the Internet. IEEE Trans. Biomed. Eng. 49(12): 1477-1479 (2002) - 2001
- [j3]Pentti Riikonen, Jorma Boberg, Tapio Salakoski, Mauno Vihinen:
BioWAP, mobile Internet service for bioinformatics. Bioinform. 17(9): 855-856 (2001)
1990 – 1999
- 1997
- [j2]Jorma Boberg, Tapio Salakoski:
Representative noise-free complete-link classification with application to protein structures. Pattern Recognit. 30(3): 467-482 (1997) - 1993
- [j1]Jorma Boberg, Tapio Salakoski:
General formulation and evaluation of agglomerative clustering methods with metric and non-metric distances. Pattern Recognit. 26(9): 1395-1406 (1993)
Coauthor Index
[j55] [j54] [j53] [j51] [c105] [c100] [i7] [i6] [i5] [i4] [i3] [j50] [j49] [c99] [c97] [c96] [c95] [c94] [c93] [c92] [c91] [c90] [c88] [c87] [j47] [j44] [c79] [j43] [j41] [c78] [c71] [c69] [c68] [c67] [j38] [j36] [c65] [j32] [j31] [c56] [c54] [j27] [c46] [c44] [j22] [j21] [c36] [c32] [c31] [j18] [j17] [c30] [j15] [c21] [j9] [c14] [e1] [j8] [c6] [j5] [c3] [c2] [c1]
Laura-Maria Peltonen
aka: Laura-Maria Murtola
aka: Laura-Maria Murtola
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