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Christopher Bystroff
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2020 – today
- 2020
- [j14]Julia Koehler Leman, Brian D. Weitzner, P. Douglas Renfrew, Steven M. Lewis, Rocco Moretti, Andrew M. Watkins, Vikram Khipple Mulligan, Sergey Lyskov, Jared Adolf-Bryfogle, Jason W. Labonte, Justyna Krys, RosettaCommons Consortium, Christopher Bystroff, William R. Schief, Dominik Gront, Ora Schueler-Furman, David Baker, Philip Bradley, Roland L. Dunbrack Jr., Tanja Kortemme, Andrew Leaver-Fay, Charlie E. M. Strauss, Jens Meiler, Brian Kuhlman, Jeffrey J. Gray, Richard Bonneau:
Better together: Elements of successful scientific software development in a distributed collaborative community. PLoS Comput. Biol. 16(5) (2020)
2010 – 2019
- 2018
- [j13]William F. Hooper, Benjamin D. Walcott, Xing Wang, Christopher Bystroff:
Fast design of arbitrary length loops in proteins using InteractiveRosetta. BMC Bioinform. 19(1): 337:1-337:9 (2018) - 2016
- [j12]Christian D. Schenkelberg, Christopher Bystroff:
Protein backbone ensemble generation explores the local structural space of unseen natural homologs. Bioinform. 32(10): 1454-1461 (2016) - 2015
- [j11]Christian D. Schenkelberg, Christopher Bystroff:
InteractiveROSETTA: a graphical user interface for the PyRosetta protein modeling suite. Bioinform. 31(24): 4023-4025 (2015) - 2014
- [j10]Derek J. Pitman, Christian D. Schenkelberg, Yao-ming Huang, Frank D. Teets, Daniel J. DiTursi, Christopher Bystroff:
Improving computational efficiency and tractability of protein design using a piecemeal approach. A strategy for parallel and distributed protein design. Bioinform. 30(8): 1138-1145 (2014) - 2013
- [j9]Yao-ming Huang, Chris Bystroff:
Expanded Explorations into the Optimization of an Energy Function for Protein Design. IEEE ACM Trans. Comput. Biol. Bioinform. 10(5): 1176-1187 (2013) - 2012
- [c9]Yao-ming Huang, Christopher Bystroff:
Exploring objective functions and cross-terms in the optimization of an energy function for protein design. BCB 2012: 155-162 - 2010
- [j8]Saeed Salem, Mohammed J. Zaki, Chris Bystroff:
FlexSnap: Flexible Non-sequential Protein Structure Alignment. Algorithms Mol. Biol. 5: 12 (2010)
2000 – 2009
- 2009
- [j7]Saeed Salem, Mohammed J. Zaki, Christopher Bystroff:
Iterative Non-Sequential protein Structural Alignment. J. Bioinform. Comput. Biol. 7(3): 571-596 (2009) - [c8]Saeed Salem, Mohammed J. Zaki, Chris Bystroff:
FlexSnap: Flexible Non-sequential Protein Structure Alignment. WABI 2009: 273-285 - 2008
- [j6]Christopher Bystroff, Bobbie-Jo M. Webb-Robertson:
Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure. BMC Bioinform. 9 (2008) - 2006
- [j5]Yao-ming Huang, Christopher Bystroff:
Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions. Bioinform. 22(4): 413-422 (2006) - 2005
- [j4]Xin Yuan, Christopher Bystroff:
Non-sequential structure-based alignments reveal topology-independent core packing arrangements in proteins. Bioinform. 21(7): 1010-1019 (2005) - [c7]Yogesh A. Girdhar, Christopher Bystroff, Srinivas Akella:
Efficient Sampling of Protein Folding Pathways using HMMSTR and Efficient Sampling of Protein Folding Pathways using HMMSTR and. CSB Workshops 2005: 222-223 - [c6]Yao-ming Huang, Christopher Bystroff:
Improved pairwise alignment of proteins in the Twilight Zone using local structure predictions. CSB Workshops 2005: 243-246 - [c5]Christopher Bystroff, Sam DeLuca, Carl N. McDaniel:
ECOME: A simple model for an evolving consumption web. CSB Workshops 2005: 260-261 - [p1]Mohammed Javeed Zaki, Vinay Nadimpally, Deb Bardhan, Chris Bystroff:
Predicting Protein Folding Pathways. Data Mining in Bioinformatics 2005: 127-141 - 2004
- [c4]Mohammed Javeed Zaki, Vinay Nadimpally, Deb Bardhan, Chris Bystroff:
Predicting protein folding pathways. ISMB/ECCB (Supplement of Bioinformatics) 2004: 386-393 - 2003
- [j3]Yuna Hou, Wynne Hsu, Mong-Li Lee, Chris Bystroff:
Efficient remote homology detection using local structure. Bioinform. 19(17): 2294-2301 (2003) - [j2]Mohammed Javeed Zaki, Shan Jin, Chris Bystroff:
Mining residue contacts in proteins using local structure predictions. IEEE Trans. Syst. Man Cybern. Part B 33(5): 789-801 (2003) - 2002
- [c3]Chris Bystroff, Yu Shao:
Fully automated ab initio protein structure prediction using I-STES, HMMSTR and ROSETTA. ISMB 2002: 54-61 - [c2]Jingjing Hu, Xiaolan Shen, Yu Shao, Chris Bystroff, Mohammed Javeed Zaki:
Mining Protein Contact Maps. BIOKDD 2002: 3-10 - 2000
- [j1]Edward C. Thayer, Chris Bystroff, David Baker:
Detection of Protein Coding Sequences Using a Mixture Model for Local Protein Amino Acid Sequence. J. Comput. Biol. 7(1-2): 317-327 (2000) - [c1]Mohammed Javeed Zaki, Shan Jin, Chris Bystroff:
Mining Residue Contacts in Proteins. BIBE 2000: 168-175
Coauthor Index
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