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2010 – 2019
- 2019
[j4]John Rivera, Soile V. E. Keränen, Steven M. Gallo, Marc S. Halfon
:
REDfly: the transcriptional regulatory element database for Drosophila. Nucleic Acids Res. 47(Database-Issue): D828-D834 (2019)- 2013
- [c8]Jonathan T. Barron, Mark D. Biggin, Pablo Arbeláez, David W. Knowles, Soile V. E. Keränen, Jitendra Malik:
Volumetric Semantic Segmentation Using Pyramid Context Features. ICCV 2013: 3448-3455 - 2012
- [p1]Oliver Rübel, Soile V. E. Keränen, Mark D. Biggin, David W. Knowles, Gunther H. Weber, Hans Hagen, Bernd Hamann, E. Wes Bethel:
Linking Advanced Visualization and MATLAB for the Analysis of 3D Gene Expression Data. Visualization in Medicine and Life Sciences II 2012: 267-285 - 2011
- [c7]Min-Yu Huang, Lester W. Mackey, Soile V. E. Keränen, Gunther H. Weber, Michael I. Jordan, David W. Knowles, Mark D. Biggin, Bernd Hamann:
Visually Relating Gene Expression and in vivo DNA Binding Data. BIBM 2011: 586-589 - 2010
- [j3]Anil Aswani, Soile V. E. Keränen, James Brown, Charless C. Fowlkes, David W. Knowles, Mark D. Biggin, Peter J. Bickel, Claire J. Tomlin:
Nonparametric identification of regulatory interactions from spatial and temporal gene expression data. BMC Bioinform. 11: 413 (2010) - [j2]Oliver Rübel, Gunther H. Weber, Min-Yu Huang, E. Wes Bethel, Mark D. Biggin, Charless C. Fowlkes, Cris L. Luengo Hendriks, Soile V. E. Keränen, Michael B. Eisen, David W. Knowles, Jitendra Malik, Hans Hagen, Bernd Hamann:
Integrating Data Clustering and Visualization for the Analysis of 3D Gene Expression Data. IEEE ACM Trans. Comput. Biol. Bioinform. 7(1): 64-79 (2010) - [c6]Oliver Rübel, Sean Ahern, E. Wes Bethel, Mark D. Biggin, Hank Childs, Estelle Cormier-Michel, Angela H. DePace, Michael B. Eisen, Charless C. Fowlkes, Cameron G. R. Geddes, Hans Hagen, Bernd Hamann, Min-Yu Huang, Soile V. E. Keränen, David W. Knowles, Cris L. Luengo Hendriks, Jitendra Malik, Jeremy S. Meredith, Peter Messmer, Prabhat:
Coupling visualization and data analysis for knowledge discovery from multi-dimensional scientific data. ICCS 2010: 1757-1764
2000 – 2009
- 2009
- [j1]Gunther H. Weber, Oliver Rübel, Min-Yu Huang, Angela H. DePace, Charless C. Fowlkes, Soile V. E. Keränen, Cris L. Luengo Hendriks, Hans Hagen, David W. Knowles, Jitendra Malik, Mark D. Biggin, Bernd Hamann:
Visual Exploration of Three-Dimensional Gene Expression Using Physical Views and Linked Abstract Views. IEEE ACM Trans. Comput. Biol. Bioinform. 6(2): 296-309 (2009) - 2007
- [c5]Oliver Rübel, Gunther H. Weber, Min-Yu Huang, E. Wes Bethel, Soile V. E. Keränen, Charless C. Fowlkes, Cris L. Luengo Hendriks, Angela H. DePace, Lisa Simirenko, Michael B. Eisen, Mark D. Biggin, Hans Hagen, Jitendra Malik, David W. Knowles, Bernd Hamann:
PointCloudXplore 2: Visual Exploration of 3D Gene Expression. Visualization of Large and Unstructured Data Sets 2007: 125-137 - 2006
- [c4]Oliver Rübel, Gunther H. Weber, Soile V. E. Keränen, Charless C. Fowlkes, Cris L. Luengo Hendriks, Lisa Simirenko, Nameeta Y. Shah, Michael B. Eisen, Mark D. Biggin, Hans Hagen, Damir Sudar, Jitendra Malik, David W. Knowles, Bernd Hamann:
PointCloudXplore: Visual Analysis of 3D Gene Expression Data Using Physical Views and Parallel Coordinates. EuroVis 2006: 203-210 - [c3]Oliver Rübel, Gunther H. Weber, Soile V. E. Keränen, Charless C. Fowlkes, Cris L. Luengo Hendriks, Lisa Simirenko, Nameeta Y. Shah, Michael B. Eisen, Mark D. Biggin, Hans Hagen, Damir Sudar, Jitendra Malik, David W. Knowles, Bernd Hamann:
PointCloudXplore: A Visualization Tool for 3D Gene Expression Data. VLUDS 2006: 107-118 - 2005
- [c2]Charless C. Fowlkes, Jitendra Malik, Cris L. Luengo Hendriks, Soile V. E. Keränen, Mark D. Biggin, David W. Knowles, Damir Sudar:
Registering Drosophila Embryos at Cellular Resolution to Build a Quantitative 3D Atlas of Gene Expression Patterns and Morphology. CSB Workshops 2005: 354-357 - [c1]Gunther H. Weber, Cris L. Luengo Hendriks, Soile V. E. Keränen, Scott E. Dillard, Derek Y. Ju, Damir Sudar, Bernd Hamann:
Visualization for Validation and Improvement of Three-dimensional Segmentation Algorithms. EuroVis 2005: 93-100
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