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Petras J. Kundrotas
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2020 – today
- 2021
- [j12]Varsha D. Badal, Petras J. Kundrotas, Ilya A. Vakser:
Text mining for modeling of protein complexes enhanced by machine learning. Bioinform. 37(4): 497-505 (2021)
2010 – 2019
- 2018
- [j11]Varsha D. Badal, Petras J. Kundrotas, Ilya A. Vakser:
Natural language processing in text mining for structural modeling of protein complexes. BMC Bioinform. 19(1): 84:1-84:10 (2018) - [j10]Saveliy Belkin, Petras J. Kundrotas, Ilya A. Vakser:
Inhibition of protein interactions: co-crystalized protein-protein interfaces are nearly as good as holo proteins in rigid-body ligand docking. J. Comput. Aided Mol. Des. 32(7): 769-779 (2018) - [j9]Taras Dauzhenka, Petras J. Kundrotas, Ilya A. Vakser:
Computational Feasibility of an Exhaustive Search of Side-Chain Conformations in Protein-Protein Docking. J. Comput. Chem. 39(24): 2012-2021 (2018) - 2016
- [j8]Jinfang Zheng, Petras J. Kundrotas, Ilya A. Vakser, Shiyong Liu:
Template-Based Modeling of Protein-RNA Interactions. PLoS Comput. Biol. 12(9) (2016) - [c1]Ivan V. Anishchenko, Varsha D. Badal, Taras Dauzhenka, Madhurima Das, Alexander V. Tuzikov, Petras J. Kundrotas, Ilya A. Vakser:
Genome-Wide Structural Modeling of Protein-Protein Interactions. ISBRA 2016: 95-105 - 2015
- [j7]Tatsiana Kirys, Anatoly M. Ruvinsky, Deepak Singla, Alexander V. Tuzikov, Petras J. Kundrotas, Ilya A. Vakser:
Simulated unbound structures for benchmarking of protein docking in the Dockground resource. BMC Bioinform. 16: 243:1-243:6 (2015) - [j6]Varsha D. Badal, Petras J. Kundrotas, Ilya A. Vakser:
Text Mining for Protein Docking. PLoS Comput. Biol. 11(12) (2015) - 2010
- [j5]Petras J. Kundrotas, Zhengwei Zhu, Ilya A. Vakser:
GWIDD: Genome-wide protein docking database. Nucleic Acids Res. 38(Database-Issue): 513-517 (2010) - [j4]Petras J. Kundrotas, Ilya A. Vakser:
Accuracy of Protein-Protein Binding Sites in High-Throughput Template-Based Modeling. PLoS Comput. Biol. 6(4) (2010)
2000 – 2009
- 2007
- [j3]Petras J. Kundrotas, Paulina Georgieva, Alexandra Shosheva, Petya Christova, Emil Alexov:
Assessing the Quality of the Homology-Modeled 3D Structures from electrostatic Standpoint: Test on bacterial nucleoside monophosphate kinase Families. J. Bioinform. Comput. Biol. 5(3): 693-715 (2007) - [j2]Petras J. Kundrotas, Emil Alexov:
PROTCOM: searchable database of protein complexes enhanced with domain-domain structures. Nucleic Acids Res. 35(Database-Issue): 575-579 (2007) - 2006
- [j1]Petras J. Kundrotas, Emil Alexov:
Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives. BMC Bioinform. 7: 503 (2006)
Coauthor Index
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