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Ludovic Cottret
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2020 – today
- 2021
- [c3]Kerian Thuillier, Caroline Baroukh, Alexander Bockmayr
, Ludovic Cottret
, Loïc Paulevé, Anne Siegel:
Learning Boolean Controls in Regulated Metabolic Networks: A Case-Study. CMSB 2021: 159-180
2010 – 2019
- 2018
- [j14]Maxime Chazalviel
, Clément Frainay
, Nathalie Poupin
, Florence Vinson, Benjamin Merlet, Yoann Gloaguen
, Ludovic Cottret
, Fabien Jourdan
:
MetExploreViz: web component for interactive metabolic network visualization. Bioinform. 34(2): 312-313 (2018) - [j13]Ludovic Cottret
, Clément Frainay
, Maxime Chazalviel, Floréal Cabanettes, Yoann Gloaguen
, Etienne Camenen, Benjamin Merlet, Stéphanie Heux, Jean-Charles Portais
, Nathalie Poupin
, Florence Vinson, Fabien Jourdan
:
MetExplore: collaborative edition and exploration of metabolic networks. Nucleic Acids Res. 46(Webserver-Issue): W495-W502 (2018) - 2015
- [j12]Lucas Marmiesse
, Rémi Peyraud
, Ludovic Cottret
:
FlexFlux: combining metabolic flux and regulatory network analyses. BMC Syst. Biol. 9: 93 (2015) - [j11]Sanu Shameer, Flora J. Logan-Klumpler, Florence Vinson, Ludovic Cottret
, Benjamin Merlet, Fiona Achcar
, Michael Boshart
, Matthew Berriman
, Rainer Breitling
, Frédéric Bringaud, Peter Bütikofer, Amy M. Cattanach, Bridget Bannerman-Chukualim, Darren J. Creek
, Kathryn Crouch
, Harry P. de Koning
, Hubert Denise
, Charles Ebikeme
, Alan H. Fairlamb
, Michael A. J. Ferguson
, Michael L. Ginger
, Christiane Hertz-Fowler
, Eduard J. Kerkhoven
, Pascal Mäser
, Paul A. M. Michels
, Archana Nayak, David W. Nes, Derek P. Nolan
, Christian Olsen, Fatima Silva-Franco
, Terry K. Smith, Martin C. Taylor
, Aloysius G. M. Tielens
, Michael D. Urbaniak
, Jaap J. van Hellemond
, Isabel M. Vincent
, Shane R. Wilkinson, Susan Wyllie
, Fred R. Opperdoes
, Michael P. Barrett, Fabien Jourdan
:
TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei. Nucleic Acids Res. 43(Database-Issue): 637-644 (2015) - 2014
- [j10]Paulo Vieira Milreu, Cecilia Coimbra Klein, Ludovic Cottret
, Vicente Acuña, Etienne Birmelé, Michele Borassi, Christophe Junot, Alberto Marchetti-Spaccamela
, Andrea Marino
, Leen Stougie, Fabien Jourdan
, Pierluigi Crescenzi
, Vincent Lacroix, Marie-France Sagot:
Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure. Bioinform. 30(1): 61-70 (2014) - [j9]Mehdi Khafif, Ludovic Cottret
, Claudine Balagué, Sylvain Raffaele
:
Identification and phylogenetic analyses of VASt, an uncharacterized protein domain associated with lipid-binding domains in Eukaryotes. BMC Bioinform. 15: 222 (2014) - 2012
- [j8]Vicente Acuña, Paulo Vieira Milreu, Ludovic Cottret
, Alberto Marchetti-Spaccamela
, Leen Stougie, Marie-France Sagot:
Algorithms and complexity of enumerating minimal precursor sets in genome-wide metabolic networks. Bioinform. 28(19): 2474-2483 (2012) - [j7]Vicente Acuña, Etienne Birmelé, Ludovic Cottret
, Pierluigi Crescenzi
, Fabien Jourdan
, Vincent Lacroix, Alberto Marchetti-Spaccamela
, Andrea Marino
, Paulo Vieira Milreu, Marie-France Sagot, Leen Stougie:
Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets. Theor. Comput. Sci. 457: 1-9 (2012) - [c2]Jonathan Dubois, Ludovic Cottret
, Amine Ghozlane, David Auber, Frédéric Bringaud, Patricia Thébault
, Fabien Jourdan, Romain Bourqui:
Systrip: A Visual Environment for the Investigation of Time-series Data in the Context of Metabolic Networks. IV 2012: 204-213 - 2011
- [j6]Augusto F. Vellozo, Amélie S. Véron, Patrice Baa-Puyoulet, Jaime Huerta-Cepas
, Ludovic Cottret
, Gérard Febvay
, Federica Calevro
, Yvan Rahbé
, Angela E. Douglas, Toni Gabaldón, Marie-France Sagot, Hubert Charles
, Stefano Colella
:
CycADS: an annotation database system to ease the development and update of BioCyc databases. Database J. Biol. Databases Curation 2011 (2011) - 2010
- [j5]Ludovic Cottret
, David Wildridge, Florence Vinson, Michael P. Barrett, Hubert Charles
, Marie-France Sagot, Fabien Jourdan
:
MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks. Nucleic Acids Res. 38(Web-Server-Issue): 132-137 (2010) - [j4]Ludovic Cottret
, Paulo Vieira Milreu, Vicente Acuña, Alberto Marchetti-Spaccamela
, Leen Stougie, Hubert Charles
, Marie-France Sagot:
Graph-Based Analysis of the Metabolic Exchanges between Two Co-Resident Intracellular Symbionts, Baumannia cicadellinicola and Sulcia muelleri, with Their Insect Host, Homalodisca coagulata. PLoS Comput. Biol. 6(9) (2010)
2000 – 2009
- 2009
- [j3]Franck Picard
, Vincent Miele
, Jean-Jacques Daudin, Ludovic Cottret
, Stéphane Robin:
Deciphering the connectivity structure of biological networks using MixNet. BMC Bioinform. 10(S-6) (2009) - 2008
- [j2]Vincent Lacroix, Ludovic Cottret
, Patricia Thébault
, Marie-France Sagot:
An Introduction to Metabolic Networks and Their Structural Analysis. IEEE ACM Trans. Comput. Biol. Bioinform. 5(4): 594-617 (2008) - [c1]Ludovic Cottret, Paulo Vieira Milreu, Vicente Acuña, Alberto Marchetti-Spaccamela
, Fábio Viduani Martinez
, Marie-France Sagot, Leen Stougie:
Enumerating Precursor Sets of Target Metabolites in a Metabolic Network. WABI 2008: 233-244 - 2007
- [j1]Romain Bourqui
, Ludovic Cottret
, Vincent Lacroix, David Auber
, Patrick Mary, Marie-France Sagot, Fabien Jourdan
:
Metabolic network visualization eliminating node redundance and preserving metabolic pathways. BMC Syst. Biol. 1: 29 (2007)
Coauthor Index
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