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ORCIDRafeef Abugharbieh
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2010 – 2019
- 2018
[j23]Prashant U. Pandey
, Pierre Guy, Antony J. Hodgson, Rafeef Abugharbieh:
Fast and automatic bone segmentation and registration of 3D ultrasound to CT for the full pelvic anatomy: a comparative study. Int. J. Comput. Assist. Radiol. Surg. 13(10): 1515-1524 (2018)- [i2]Chendi Wang, Rafeef Abugharbieh:
Coactivated Clique Based Multisource Overlapping Brain Subnetwork Extraction. CoRR abs/1801.09589 (2018) - 2017
- [j22]Negar M. Harandi, Ian Stavness, Jonghye Woo, Maureen Stone, Rafeef Abugharbieh, Sidney S. Fels:
Subject-specific biomechanical modelling of the oropharynx: towards speech production. Comput. methods Biomech. Biomed. Eng. Imaging Vis. 5(6): 416-426 (2017) - [j21]Alborz Amir-Khalili, Ghassan Hamarneh, Rafeef Abugharbieh:
Modelling and extraction of pulsatile radial distension and compression motion for automatic vessel segmentation from video. Medical Image Anal. 40: 184-198 (2017) - [c70]Chendi Wang, Bernard Ng, Rafeef Abugharbieh:
Multimodal Brain Subnetwork Extraction Using Provincial Hub Guided Random Walks. IPMI 2017: 287-298 - [c69]Niamul Quader, Antony J. Hodgson, Kishore Mulpuri, Anthony Cooper, Rafeef Abugharbieh:
A 3D Femoral Head Coverage Metric for Enhanced Reliability in Diagnosing Hip Dysplasia. MICCAI (1) 2017: 100-107 - [c68]Olivia Paserin, Kishore Mulpuri, Anthony Cooper, Antony J. Hodgson, Rafeef Abugharbieh:
Automatic Near Real-Time Evaluation of 3D Ultrasound Scan Adequacy for Developmental Dysplasia of the Hip. CARE/CLIP@MICCAI 2017: 124-132 - [c67]Alborz Amir-Khalili, Soheil Kianzad, Rafeef Abugharbieh, Ivan Beschastnikh:
Scalable and Fault Tolerant Platform for Distributed Learning on Private Medical Data. MLMI@MICCAI 2017: 176-184 - [c66]Mohammad Arafat Hussain, Alborz Amir-Khalili, Ghassan Hamarneh, Rafeef Abugharbieh:
Collage CNN for Renal Cell Carcinoma Detection from CT. MLMI@MICCAI 2017: 229-237 - [c65]Mohammad Arafat Hussain, Alborz Amir-Khalili, Ghassan Hamarneh, Rafeef Abugharbieh:
Segmentation-Free Kidney Localization and Volume Estimation Using Aggregated Orthogonal Decision CNNs. MICCAI (3) 2017: 612-620 - 2016
- [j20]Masoud S. Nosrati, Alborz Amir-Khalili, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Rafeef Abugharbieh, Ghassan Hamarneh:
Endoscopic scene labelling and augmentation using intraoperative pulsatile motion and colour appearance cues with preoperative anatomical priors. Int. J. Comput. Assist. Radiol. Surg. 11(8): 1409-1418 (2016) - [j19]Masoud S. Nosrati, Rafeef Abugharbieh, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Ghassan Hamarneh:
Simultaneous Multi-Structure Segmentation and 3D Nonrigid Pose Estimation in Image-Guided Robotic Surgery. IEEE Trans. Medical Imaging 35(1): 1-12 (2016) - [j18]Burak Yoldemir, Bernard Ng, Rafeef Abugharbieh:
Stable Overlapping Replicator Dynamics for Brain Community Detection. IEEE Trans. Medical Imaging 35(2): 529-538 (2016) - [c64]Chendi Wang, Bernard Ng, Rafeef Abugharbieh:
Modularity Reinforcement for Improving Brain Subnetwork Extraction. MICCAI (1) 2016: 132-139 - [c63]Mohammad Arafat Hussain, Ghassan Hamarneh, Timothy W. O'Connell, Mohammed F. Mohammed, Rafeef Abugharbieh:
Segmentation-Free Estimation of Kidney Volumes in CT with Dual Regression Forests. MLMI@MICCAI 2016: 156-163 - [c62]Niamul Quader, Antony J. Hodgson, Kishore Mulpuri, Anthony Cooper, Rafeef Abugharbieh:
Towards Reliable Automatic Characterization of Neonatal Hip Dysplasia from 3D Ultrasound Images. MICCAI (1) 2016: 602-609 - 2015
- [j17]Ilker Hacihaliloglu, Pierre Guy, Antony J. Hodgson, Rafeef Abugharbieh:
Automatic extraction of bone surfaces from 3D ultrasound images in orthopaedic trauma cases. Int. J. Comput. Assist. Radiol. Surg. 10(8): 1279-1287 (2015) - [j16]Negar M. Harandi, Rafeef Abugharbieh, Sidney S. Fels:
3D segmentation of the tongue in MRI: a minimally interactive model-based approach. Comput. methods Biomech. Biomed. Eng. Imaging Vis. 3(4): 178-188 (2015) - [j15]Alborz Amir-Khalili, Ghassan Hamarneh, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Rafeef Abugharbieh:
Automatic segmentation of occluded vasculature via pulsatile motion analysis in endoscopic robot-assisted partial nephrectomy video. Medical Image Anal. 25(1): 103-110 (2015) - [c61]Burak Yoldemir, Bernard Ng, Rafeef Abugharbieh:
Coupled Stable Overlapping Replicator Dynamics for Multimodal Brain Subnetwork Identification. IPMI 2015: 770-781 - [c60]Niamul Quader, Antony J. Hodgson, Kishore Mulpuri, Thomas Savage, Rafeef Abugharbieh:
Automatic assessment of developmental dysplasia of the hip. ISBI 2015: 13-16 - [c59]Mohammad Bajammal, Burak Yoldemir, Rafeef Abugharbieh:
Comparison of structural connectivity metrics for multimodal brain image analysis. ISBI 2015: 934-937 - [c58]Chendi Wang, Burak Yoldemir, Rafeef Abugharbieh:
Improved functional cortical parcellation using a neighborhood-information-embedded affinity matrix. ISBI 2015: 1340-1343 - [c57]Moshiur Rahman Farazi, Bonnie Martin-Harris, Negar M. Harandi, Sidney S. Fels, Rafeef Abugharbieh:
A 3D dynamic biomechanical swallowing model for training and diagnosis of dysphagia. ISBI 2015: 1385-1388 - [c56]Negar M. Harandi, Jonghye Woo, Moshiur Rahman Farazi, Ian Stavness, Maureen Stone, Sidney S. Fels, Rafeef Abugharbieh:
Subject-specific biomechanical modelling of the oropharynx with application to speech production. ISBI 2015: 1389-1392 - [c55]Chendi Wang, Burak Yoldemir, Rafeef Abugharbieh:
Multimodal Cortical Parcellation Based on Anatomical and Functional Brain Connectivity. MICCAI (3) 2015: 21-28 - [c54]Alborz Amir-Khalili, Ghassan Hamarneh, Rafeef Abugharbieh:
Automatic Vessel Segmentation from Pulsatile Radial Distension. MICCAI (3) 2015: 403-410 - 2014
- [c53]Burak Yoldemir, Bernard Ng, Rafeef Abugharbieh:
Effects of tractography approach on consistency between anatomical and functional connectivity estimates. ISBI 2014: 250-253 - [c52]Ivan Figueroa-Garcia, Jean-Marc Peyrat, Ghassan Hamarneh, Rafeef Abugharbieh:
Biomechanical kidney model for predicting tumor displacement in the presence of external pressure load. ISBI 2014: 810-813 - [c51]Niamul Quader, Antony J. Hodgson, Rafeef Abugharbieh:
Confidence Weighted Local Phase Features for Robust Bone Surface Segmentation in Ultrasound. CLIP@MICCAI 2014: 76-83 - [c50]Masoud S. Nosrati, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Rafeef Abugharbieh, Ghassan Hamarneh:
Efficient Multi-organ Segmentation in Multi-view Endoscopic Videos Using Pre-operative Priors. MICCAI (2) 2014: 324-331 - [c49]Mohammad Arafat Hussain, Antony J. Hodgson, Rafeef Abugharbieh:
Robust Bone Detection in Ultrasound Using Combined Strain Imaging and Envelope Signal Power Detection. MICCAI (1) 2014: 356-363 - [c48]Alborz Amir-Khalili, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Ghassan Hamarneh, Rafeef Abugharbieh:
Auto Localization and Segmentation of Occluded Vessels in Robot-Assisted Partial Nephrectomy. MICCAI (1) 2014: 407-414 - [c47]Jeremy Kawahara, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Rafeef Abugharbieh, Ghassan Hamarneh:
Automatic Labelling of Tumourous Frames in Free-Hand Laparoscopic Ultrasound Video. MICCAI (2) 2014: 676-683 - 2013
- [c46]Burak Yoldemir, Bernard Ng, Todd S. Woodward, Rafeef Abugharbieh:
Fiber Connectivity Integrated Brain Activation Detection. IPMI 2013: 135-146 - [c45]Alborz Amir-Khalili, Antony J. Hodgson, Rafeef Abugharbieh:
Real-time extraction of local phase features from volumetric medical image data. ISBI 2013: 930-933 - [c44]Alborz Amir-Khalili, Masoud S. Nosrati, Jean-Marc Peyrat, Ghassan Hamarneh, Rafeef Abugharbieh:
Uncertainty-Encoded Augmented Reality for Robot-Assisted Partial Nephrectomy: A Phantom Study. AE-CAI 2013: 182-191 - [c43]Alborz Amir-Khalili, Jean-Marc Peyrat, Ghassan Hamarneh, Rafeef Abugharbieh:
3D Surface Reconstruction of Organs Using Patient-Specific Shape Priors in Robot-Assisted Laparoscopic Surgery. Abdominal Imaging 2013: 184-193 - [c42]Burak Yoldemir, Bernard Ng, Rafeef Abugharbieh:
Overlapping Replicator Dynamics for Functional Subnetwork Identification. MICCAI (2) 2013: 682-689 - 2012
- [j14]Bernard Ng, Martin J. McKeown, Rafeef Abugharbieh:
Group Replicator Dynamics: A Novel Group-Wise Evolutionary Approach for Sparse Brain Network Detection. IEEE Trans. Medical Imaging 31(3): 576-585 (2012) - [j13]Bernard Ng, Ghassan Hamarneh, Rafeef Abugharbieh:
Modeling Brain Activation in fMRI Using Group MRF. IEEE Trans. Medical Imaging 31(5): 1113-1123 (2012) - [c41]K. Krishna Nand, Ghassan Hamarneh, Rafeef Abugharbieh:
Diffusion tensor image processing using biquaternions. ISBI 2012: 538-541 - [c40]Burak Yoldemir, Bernard Ng, Rafeef Abugharbieh:
Deconfounding the Effects of Resting State Activity on Task Activation Detection in fMRI. MBIA 2012: 51-60 - [c39]Ilker Hacihaliloglu, Anna Brounstein, Pierre Guy, Antony J. Hodgson, Rafeef Abugharbieh:
3D Ultrasound-CT Registration in Orthopaedic Trauma Using GMM Registration with Optimized Particle Simulation-Based Data Reduction. MICCAI (2) 2012: 82-89 - [c38]Sylvain Bernhardt, Julien Abi-Nahed, Rafeef Abugharbieh:
Robust Dense Endoscopic Stereo Reconstruction for Minimally Invasive Surgery. MCV 2012: 254-262 - [c37]Bernard Ng, Viviana Siless, Gaël Varoquaux, Jean-Baptiste Poline, Bertrand Thirion, Rafeef Abugharbieh:
Connectivity-informed Sparse Classifiers for fMRI Brain Decoding. PRNI 2012: 101-104 - 2011
- [c36]Bernard Ng, Rafeef Abugharbieh:
Generalized group sparse classifiers with application in fMRI brain decoding. CVPR 2011: 1065-1071 - [c35]Bernard Ng, Rafeef Abugharbieh:
Generalized Sparse Regularization with Application to fMRI Brain Decoding. IPMI 2011: 612-623 - [c34]K. Krishna Nand, Rafeef Abugharbieh, Brian G. Booth, Ghassan Hamarneh:
Detecting Structure in Diffusion Tensor MR Images. MICCAI (2) 2011: 90-97 - [c33]Anna Brounstein, Ilker Hacihaliloglu, Pierre Guy, Antony J. Hodgson, Rafeef Abugharbieh:
Towards Real-Time 3D US to CT Bone Image Registration Using Phase and Curvature Feature Based GMM Matching. MICCAI (1) 2011: 235-242 - [c32]Bernard Ng, Rafeef Abugharbieh, Gaël Varoquaux, Jean-Baptiste Poline, Bertrand Thirion:
Connectivity-Informed fMRI Activation Detection. MICCAI (2) 2011: 285-292 - [c31]Andrew Top, Ghassan Hamarneh, Rafeef Abugharbieh:
Active Learning for Interactive 3D Image Segmentation. MICCAI (3) 2011: 603-610 - [c30]Bernard Ng, Rafeef Abugharbieh:
Modeling Spatiotemporal Structure in fMRI Brain Decoding Using Generalized Sparse Classifiers. PRNI 2011: 65-68 - 2010
- [j12]Albert Huang, Rafeef Abugharbieh, Roger C. Tam:
A Novel Rotationally Invariant Region-Based Hidden Markov Model for Efficient 3-D Image Segmentation. IEEE Trans. Image Process. 19(10): 2737-2748 (2010) - [j11]Victor Sanchez, Rafeef Abugharbieh, Panos Nasiopoulos:
3-D Scalable Medical Image Compression With Optimized Volume of Interest Coding. IEEE Trans. Medical Imaging 29(10): 1808-1820 (2010) - [c29]Bernard Ng, Rafeef Abugharbieh, Ghassan Hamarneh:
Group MRF for fMRI activation detection. CVPR 2010: 2887-2894 - [c28]Josna Rao, Rafeef Abugharbieh, Ghassan Hamarneh:
Adaptive Regularization for Image Segmentation Using Local Image Curvature Cues. ECCV (4) 2010: 651-665 - [c27]Bernard Ng, Arash Vahdat, Ghassan Hamarneh, Rafeef Abugharbieh:
Generalized Sparse Classifiers for Decoding Cognitive States in fMRI. MLMI 2010: 108-115 - [c26]Andrew Top, Ghassan Hamarneh, Rafeef Abugharbieh:
Spotlight: Automated Confidence-Based User Guidance for Increasing Efficiency in Interactive 3D Image Segmentation. MCV 2010: 204-213 - [c25]Bernard Ng, Ghassan Hamarneh, Rafeef Abugharbieh:
Detecting Brain Activation in fMRI Using Group Random Walker. MICCAI (2) 2010: 331-338 - [c24]Rupin Dalvi, Ilker Hacihaliloglu, Rafeef Abugharbieh:
3D ultrasound volume stitching using phase symmetry and harris corner detection for orthopaedic applications. Medical Imaging: Image Processing 2010: 762330 - [c23]Lisa Tang, Ghassan Hamarneh, Rafeef Abugharbieh:
Reliability-Driven, Spatially-Adaptive Regularization for Deformable Registration. WBIR 2010: 173-185
2000 – 2009
- 2009
- [j10]Albert Huang, Rafeef Abugharbieh, Roger C. Tam:
A Hybrid Geometric-Statistical Deformable Model for Automated 3-D Segmentation in Brain MRI. IEEE Trans. Biomed. Eng. 56(7): 1838-1848 (2009) - [j9]Victor Sanchez, Panos Nasiopoulos, Rafeef Abugharbieh:
Novel Lossless fMRI Image Compression Based on Motion Compensation and Customized Entropy Coding. IEEE Trans. Inf. Technol. Biomed. 13(4): 645-655 (2009) - [j8]Bernard Ng, Rafeef Abugharbieh, Xuemei Huang, Martin J. McKeown:
Spatial Characterization of fMRI Activation Maps Using Invariant 3-D Moment Descriptors. IEEE Trans. Medical Imaging 28(2): 261-268 (2009) - [j7]Victor Sanchez, Rafeef Abugharbieh, Panos Nasiopoulos:
Symmetry-Based Scalable Lossless Compression of 3D Medical Image Data. IEEE Trans. Medical Imaging 28(7): 1062-1072 (2009) - [c22]Victor Sanchez, Rafeef Abugharbieh, Panos Nasiopoulos:
3D scalable lossless compression of medical images based on global and local symmetries. ICIP 2009: 2525-2528 - [c21]Bernard Ng, Rafeef Abugharbieh, Martin J. McKeown:
Discovering Sparse Functional Brain Networks Using Group Replicator Dynamics (GRD). IPMI 2009: 76-87 - [c20]Bernard Ng, Rafeef Abugharbieh, Martin J. McKeown:
Detecting Maximal Directional Changes in Spatial fMRI Response Using Canonical Correlation Analysis. ISBI 2009: 650-653 - [c19]Ilker Hacihaliloglu, Rafeef Abugharbieh, Antony J. Hodgson, Robert Rohling:
Automatic Data-Driven Parameterization for Phase-Based Bone Localization in US Using Log-Gabor Filters. ISVC (1) 2009: 944-954 - [c18]Josna Rao, Ghassan Hamarneh, Rafeef Abugharbieh:
Adaptive Contextual Energy Parameterization for Automated Image Segmentation. ISVC (1) 2009: 1089-1100 - [c17]Albert Huang, Rafeef Abugharbieh, Roger C. Tam:
A Fuzzy Region-Based Hidden Markov Model for Partial-Volume Classification in Brain MRI. MICCAI (1) 2009: 474-481 - [c16]Bernard Ng, Rafeef Abugharbieh, Martin J. McKeown:
Functional Segmentation of fMRI Data Using Adaptive Non-negative Sparse PCA (ANSPCA). MICCAI (1) 2009: 490-497 - [i1]Josna Rao, Ghassan Hamarneh, Rafeef Abugharbieh:
Automatic Spatially-Adaptive Balancing of Energy Terms for Image Segmentation. CoRR abs/0906.4131 (2009) - 2008
- [j6]Miranda Poon, Ghassan Hamarneh, Rafeef Abugharbieh:
Efficient interactive 3D Livewire segmentation of complex objects with arbitrary topology. Comput. Medical Imaging Graph. 32(8): 639-650 (2008) - [j5]Ashish Uthama, Rafeef Abugharbieh, Samantha J. Palmer, Anthony Traboulsee, Martin J. McKeown:
SPHARM-Based Spatial fMRI Characterization With Intersubject Anatomical Variability Reduction. IEEE J. Sel. Top. Signal Process. 2(6): 907-918 (2008) - [j4]Victor Sanchez, Panos Nasiopoulos, Rafeef Abugharbieh:
Efficient Lossless Compression of 4-D Medical Images Based on the Advanced Video Coding Scheme. IEEE Trans. Inf. Technol. Biomed. 12(4): 442-446 (2008) - [c15]Albert Huang, Rafeef Abugharbieh, Roger C. Tam:
Image segmentation using an efficient rotationally invariant 3D region-based hidden Markov model. CVPR Workshops 2008: 1-8 - [c14]Victor Sanchez, Panos Nasiopoulos, Rafeef Abugharbieh:
Efficient 4D motion compensated lossless compression of dynamic volumetric medical image data. ICASSP 2008: 549-552 - [c13]Ashish Uthama, Rafeef Abugharbieh, Samantha J. Palmer, Anthony Traboulsee, Martin J. McKeown:
Invariant 3D spharm features for characterizing fMRI activations in ROIs while minimizing effects of intersubject anatomical variability. ISBI 2008: 560-563 - [c12]Bernard Ng, Rafeef Abugharbieh, Martin J. McKeown:
Inferring functional connectivity using spatial modulation measures of fMRI signals within brain regions of interest. ISBI 2008: 572-575 - [c11]Ilker Hacihaliloglu, Rafeef Abugharbieh, Antony J. Hodgson, Robert Rohling:
Bone Segmentation and Fracture Detection in Ultrasound Using 3D Local Phase Features. MICCAI (1) 2008: 287-295 - 2007
- [j3]Rayan Saab, Özgür Yilmaz, Martin J. McKeown, Rafeef Abugharbieh:
Underdetermined Anechoic Blind Source Separation via ellq-Basis-Pursuit With q<<1. IEEE Trans. Signal Process. 55(8): 4004-4017 (2007) - [c10]Kelvin Poon, Ghassan Hamarneh, Rafeef Abugharbieh:
Live-Vessel: Extending Livewire for Simultaneous Extraction of Optimal Medial and Boundary Paths in Vascular Images. MICCAI (2) 2007: 444-451 - [c9]Bernard Ng, Rafeef Abugharbieh, Samantha J. Palmer, Martin J. McKeown:
Characterizing Task-Related Temporal Dynamics of Spatial Activation Distributions in fMRI BOLD Signals. MICCAI (1) 2007: 767-774 - [c8]Rupin Dalvi, Rafeef Abugharbieh, Mark Pickering, Jennie M. Scarvell, Paul N. Smith:
Registration of 2D to 3D joint images using phase-based mutual information. Medical Imaging: Image Processing 2007: 651209 - [c7]Kelvin Poon, Ghassan Hamarneh, Rafeef Abugharbieh:
Segmentation of complex objects with non-spherical topologies from volumetric medical images using 3D livewire. Medical Imaging: Image Processing 2007: 651231 - 2006
- [c6]Bernard Ng, Rafeef Abugharbieh, Xuemei Huang, Martin J. McKeown:
Characterizing fMRI Activations within Regions of Interest (ROIs) Using 3D Moment Invariants. CVPR Workshops 2006: 63 - [c5]Victor Sanchez, Panos Nasiopoulos, Rafeef Abugharbieh:
Lossless Compression of 4D Medical Images using H.264/AVC. ICASSP (2) 2006: 1116-1119 - [c4]Albert Huang, Rafeef Abugharbieh, Roger C. Tam, Anthony Traboulsee:
Automatic MRI brain tissue segmentation using a hybrid statistical and geometric model. ISBI 2006: 394-397 - [c3]Sina Tootoonian, Rafeef Abugharbieh, Xuemei Huang, Martin J. McKeown:
Shape vs. volume: invariant shape descriptors for 3D region of interest characterization in MRI. ISBI 2006: 754-757 - [c2]Mohsen Abbaspour, Rafeef Abugharbieh, Mohua Podder, Scott J. Tebbutt:
Fully automated analysis of multi-resolution four-channel micro-array genotyping data. Medical Imaging: Image Processing 2006: 61443M - [c1]Albert Huang, Rafeef Abugharbieh, Roger C. Tam, Anthony Traboulsee:
Brain extraction using geodesic active contours. Medical Imaging: Image Processing 2006: 61444J - 2004
- [j2]Ghassan Hamarneh, Rafeef Abugharbieh, Tim McInerney:
Medial Profiles for Modeling Deformation and Statistical Analysis of Shape and their Use in Medical Image Segmentation. Int. J. Shape Model. 10(2): 187-210 (2004) - 2003
- [j1]Rafeef Abugharbieh, Ghassan Hamarneh, Tomas Gustavsson, Clemens Kaminski:
Level Set Curve Matching and Particle Image Velocimetry for Resolving Chemistry and Turbulence Interactions in Propagating Flames. J. Math. Imaging Vis. 19(3): 199-218 (2003)
Coauthor Index
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