Screening of BindingDB database ligands against EGFR, HER2, Estrogen, Progesterone and NF-κB receptors based on machine learning and molecular docking. - Rezaee, Parham; Rezaee, Shahab; Maaza, Malik; Arab, Seyed Shahriar (Comput. Biol. Medicine, 2024)

Screening of BindingDB database ligands against EGFR, HER2, Estrogen, Progesterone and NF-kB receptors based on machine learning and molecular docking. - Rezaee, Parham; Rezaee, Shahab; Maaza, Malik; Arab, Seyed Shahriar (CoRR, 2024)

Protein sequence profile prediction using ProtAlbert transformer. - Behjati, Armin; Zare-Mirakabad, Fatemeh; Arab, Seyed Shahriar; Nowzari-Dalini, Abbas (Comput. Biol. Chem., 2022)

Prediction of chemoresistance trait of cancer cell lines using machine learning algorithms and systems biology analysis. - Ataei, Atousa; Majidi, Niloufar Seyed; Zahiri, Javad; Rostami, Mehrdad; Arab, Seyed Shahriar; Rizvanov, Albert (J. Big Data, 2021)

Evaluating the accuracy of protein design using native secondary sub-structures. - Movahedi, Marziyeh; Zare-Mirakabad, Fatemeh; Arab, Seyed Shahriar (BMC Bioinform., 2016)

PDB2Graph: A toolbox for identifying critical amino acids map in proteins based on graph theory. - Niknam, Niloofar; Khakzad, Hamed; Arab, Seyed Shahriar; Naderi-manesh, Hossein (Comput. Biol. Medicine, 2016)

MemBuilder: a web-based graphical interface to build heterogeneously mixed membrane bilayers for the GROMACS biomolecular simulation program. - Ghahremanpour, Mohammad Mehdi; Arab, Seyed Shahriar; Aghazadeh, Saman Biook; Zhang, Jin; Spoel, David van der (Bioinform., 2014)

NETAL: a new graph-based method for global alignment of protein-protein interaction networks. - Neyshabur, Behnam; Khadem, Ahmadreza; Hashemifar, Somaye; Arab, Seyed Shahriar (Bioinform., 2013)

Putracer: a Novel Method for Identification of continuous-Domains in Multi-Domain proteins. - Arab, Seyed Shahriar; Gharamaleki, Mohammadbagher Parsa; Pashandi, Zaiddodine; Mobasseri, Rezvan (J. Bioinform. Comput. Biol., 2013)

Inference of Gene Regulatory Networks by Extended Kalman Filtering using Gene Expression Time Series Data. - Fouladi, Ramouna; Fatemizadeh, Emad; Arab, Seyed Shahriar (2012)

A pairwise residue contact area-based mean force potential for discrimination of native protein structure. - Arab, Shahriar; Sadeghi, Mehdi; Eslahchi, Changiz; Pezeshk, Hamid; Sheari, Armita (BMC Bioinform., 2010)

Overcoming drug resistance by co-targeting. - Ayati, Marzieh; Taheri, Golnaz; Arab, Shahriar; Wong, Limsoon; Eslahchi, Changiz (2010)

STON: A novel method for protein three-dimensional structure comparison. - Eslahchi, Changiz; Pezeshk, Hamid; Sadeghi, Mehdi; Rahimi, Amir Massoud; Afkham, Heydar Maboudi; Arab, Shahriar (Comput. Biol. Medicine, 2009)

A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins. - Sheari, Armita; Kargar, Mehdi; Katanforoush, Ali; Arab, Shahriar; Sadeghi, Mehdi; Pezeshk, Hamid; Eslahchi, Changiz; Marashi, Sayed-Amir (BMC Bioinform., 2008)

A method for protein accessibility prediction based on residue types and conformational states. - Zarei, Roghayeh; Arab, Shahriar; Sadeghi, Mehdi (Comput. Biol. Chem., 2007)