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Joshua Orvis
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2020 – today
- 2023
- [j8]Seth A. Ament
, Ricky S. Adkins, Robert Carter
, Elena Chrysostomou, Carlo Colantuoni, Jonathan Crabtree, Heather Huot Creasy
, Kylee Degatano, Victor Felix, Peter Gandt, Gwenn a Garden, Michelle G. Giglio
, Brian R. Herb, Farzaneh Khajouei, Elizabeth Kiernan
, Carrie McCracken, Kennedy McDaniel, Suvarna Nadendla, Lance Nickel, Dustin Olley
, Joshua Orvis, Joseph P. Receveur, Mike Schor, Shreyash Sonthalia
, Timothy L. Tickle
, Jessica Way, Ronna Hertzano, Anup A. Mahurkar, Owen R. White:
The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 51(D1): 1075-1085 (2023) - 2021
- [j7]Heather Huot Creasy
, Victor Felix, Jain Aluvathingal, Jonathan Crabtree, Olukemi O. Ifeonu, James Matsumura, Carrie McCracken, Lance Nickel, Joshua Orvis, Mike Schor, Michelle G. Giglio, Anup Mahurkar, Owen White:
HMPDACC: a Human Microbiome Project Multi-omic data resource. Nucleic Acids Res. 49(Database-Issue): D734-D742 (2021)
2010 – 2019
- 2014
- [j6]Gustavo C. Cerqueira, Martha B. Arnaud, Diane O. Inglis
, Marek S. Skrzypek, Gail Binkley, Matt Simison, Stuart R. Miyasato, Jonathan Binkley, Joshua Orvis, Prachi Shah, Farrell Wymore, Gavin Sherlock
, Jennifer R. Wortman
:
The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations. Nucleic Acids Res. 42(Database-Issue): 705-710 (2014) - 2012
- [j5]Martha B. Arnaud, Gustavo C. Cerqueira, Diane O. Inglis
, Marek S. Skrzypek, Jonathan Binkley, Marcus C. Chibucos
, Jonathan Crabtree, Clinton Howarth, Joshua Orvis, Prachi Shah, Farrell Wymore, Gail Binkley, Stuart R. Miyasato, Matt Simison, Gavin Sherlock
, Jennifer R. Wortman
:
The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources. Nucleic Acids Res. 40(Database-Issue): 653-659 (2012) - 2010
- [j4]Joshua Orvis, Jonathan Crabtree, Kevin Galens, Aaron Gussman, Jason M. Inman, Eduardo Lee, Sreenath Nampally, David R. Riley, Jaideep P. Sundaram, Victor Felix, Brett Whitty
, Anup Mahurkar, Jennifer R. Wortman
, Owen White, Samuel V. Angiuoli
:
Ergatis: a web interface and scalable software system for bioinformatics workflows. Bioinform. 26(12): 1488-1492 (2010) - [j3]Lauren M. Brinkac, Tanja Davidsen, Erin Beck, Anuradha Ganapathy, Elisabet Caler, Robert J. Dodson, A. Scott Durkin, Derek M. Harkins, Hernan Lorenzi
, Ramana Madupu, Yinong Sebastian, Susmita Shrivastava, Mathangi Thiagarajan, Joshua Orvis, Jaideep P. Sundaram, Jonathan Crabtree, Kevin Galens, Yongmei Zhao, Jason M. Inman, Robert Montgomery, Seth A. Schobel
, Kevin Galinsky, David M. Tanenbaum, Adam Resnick, Nikhat Zafar, Owen White, Granger G. Sutton:
Pathema: a clade-specific bioinformatics resource center for pathogen research. Nucleic Acids Res. 38(Database-Issue): 408-414 (2010) - [j2]Martha B. Arnaud, Marcus C. Chibucos
, Maria C. Costanzo, Jonathan Crabtree, Diane O. Inglis
, Adil Lotia, Joshua Orvis, Prachi Shah, Marek S. Skrzypek, Gail Binkley, Stuart R. Miyasato, Jennifer R. Wortman
, Gavin Sherlock
:
The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community. Nucleic Acids Res. 38(Database-Issue): 420-427 (2010)
2000 – 2009
- 2007
- [j1]Shu Ouyang, Wei Zhu, John A. Hamilton Jr.
, Haining Lin, Matthew Campbell, Kevin L. Childs
, Françoise Thibaud-Nissen, Renae L. Malek, Yuandan Lee, Li Zheng, Joshua Orvis, Brian Haas, Jennifer R. Wortman, C. Robin Buell
:
The TIGR Rice Genome Annotation Resource: improvements and new features. Nucleic Acids Res. 35(Database-Issue): 883-887 (2007)
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